Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 5.7e-55 217.6 134 100.0
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 4.7e-41 171.4 134 79.9
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 3.2e-37 158.7 136 68.4
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 7.0e-37 157.5 136 67.6
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 2.9e-35 152.1 135 64.4
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 2.9e-35 152.1 136 60.3
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 6.6e-35 151.0 135 66.7
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 5.6e-34 147.9 135 74.8
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 2.8e-33 145.6 136 59.6
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 3.1e-32 142.1 135 69.6
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 5.2e-32 141.4 135 70.4
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 6.8e-32 141.0 136 64.7
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 3.4e-31 138.7 134 57.5
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 3.4e-31 138.7 134 70.9
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 9.8e-31 137.1 133 52.6
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 2.2e-30 136.0 134 59.7
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 8.3e-30 134.0 134 70.1
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 1.4e-29 133.3 134 53.0
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 1.9e-29 132.9 134 61.9
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 3.2e-29 132.1 139 51.8
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 3.2e-29 132.1 132 54.5
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 7.0e-29 131.0 134 51.5
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 7.0e-29 131.0 130 67.7
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 9.2e-29 130.6 134 50.7
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.0e-28 129.4 134 50.0
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 2.0e-28 129.4 134 50.0
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.7e-28 129.0 134 51.5
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.5e-28 128.6 128 59.4
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 6.0e-28 127.9 134 60.4
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.3e-27 125.9 130 70.0
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 2.3e-27 125.9 135 61.5
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 3.0e-27 125.6 133 55.6
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 3.0e-27 125.6 132 67.4
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 3.0e-27 125.6 134 63.4
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 3.0e-27 125.6 134 59.7
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 3.9e-27 125.2 134 50.0
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 3.9e-27 125.2 130 69.2
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.9e-27 125.2 130 69.2
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 3.9e-27 125.2 134 60.4
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 6.6e-27 124.4 101 70.3
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 6.6e-27 124.4 101 70.3
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 6.6e-27 124.4 134 56.7
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 8.6e-27 124.0 134 50.7
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 8.6e-27 124.0 146 52.1
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.1e-26 123.6 134 50.0
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 1.1e-26 123.6 134 55.2
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 2.5e-26 122.5 138 55.1
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 2.5e-26 122.5 129 60.5
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 3.3e-26 122.1 134 63.4
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 3.3e-26 122.1 134 51.5
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 4.3e-26 121.7 122 51.6
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 4.3e-26 121.7 134 49.3
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 5.6e-26 121.3 134 60.4
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 1.2e-25 120.2 135 49.6
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 1.2e-25 120.2 132 51.5
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 2.1e-25 119.4 137 63.5
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 6.2e-25 117.9 132 59.1
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 6.2e-25 117.9 134 46.3
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 6.2e-25 117.9 134 50.0
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 3.1e-24 115.5 135 52.6
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 3.1e-24 115.5 134 57.5
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 5.2e-24 114.8 135 48.1
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 5.2e-24 114.8 134 54.5
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 5.2e-24 114.8 134 56.7
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 5.2e-24 114.8 134 53.0
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 8.9e-24 114.0 145 42.8
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 2.0e-23 112.8 132 53.8
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 1.3e-22 110.2 138 46.4
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 4.9e-22 108.2 97 53.6
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 1.4e-21 106.7 137 52.6
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 4.1e-21 105.1 123 64.2
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 7.1e-21 104.4 129 53.5
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 7.1e-21 104.4 133 45.9
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 1.2e-20 103.6 135 55.6
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 2.1e-20 102.8 136 51.5
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 2.1e-20 102.8 85 77.6
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 3.5e-20 102.1 139 55.4
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 3.5e-20 102.1 115 60.0
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 6.0e-20 101.3 139 56.8
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 7.8e-20 100.9 136 52.9
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 1.3e-19 100.1 138 46.4
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 1.7e-19 99.8 145 49.0
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 2.3e-19 99.4 134 43.3
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 2.3e-19 99.4 141 56.0
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 3.0e-19 99.0 139 61.9
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 5.1e-19 98.2 137 49.6
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 8.6e-19 97.4 134 57.5
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 1.1e-18 97.1 121 47.9
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 1.1e-18 97.1 136 46.3
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 2.5e-18 95.9 139 42.4
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 3.3e-18 95.5 104 59.6
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 3.3e-18 95.5 104 59.6
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 3.3e-18 95.5 135 53.3
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 4.3e-18 95.1 109 46.8
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 4.3e-18 95.1 126 56.3
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 4.3e-18 95.1 132 58.3
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 5.6e-18 94.7 140 50.0
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 5.6e-18 94.7 140 52.9
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 7.3e-18 94.4 132 55.3
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 2.1e-17 92.8 86 61.6
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 2.1e-17 92.8 104 65.4
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 2.1e-17 92.8 136 41.2
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 2.1e-17 92.8 95 72.6
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 2.8e-17 92.4 109 58.7
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 2.8e-17 92.4 99 65.7
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 3.6e-17 92.0 104 64.4
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 3.6e-17 92.0 104 64.4
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 3.6e-17 92.0 127 55.1
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 3.6e-17 92.0 108 62.0
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 4.7e-17 91.7 123 53.7
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 4.7e-17 91.7 104 62.5
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 4.7e-17 91.7 136 58.8
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 8.1e-17 90.9 97 68.0
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 8.1e-17 90.9 130 46.9
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 1.1e-16 90.5 86 73.3
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 1.4e-16 90.1 139 55.4
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 2.3e-16 89.4 130 51.5
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 2.3e-16 89.4 113 44.2
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.3e-16 89.4 132 56.8
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.3e-16 89.4 132 56.8
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.3e-16 89.4 87 54.0
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 2.3e-16 89.4 93 72.0
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 3.1e-16 89.0 93 49.5
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 3.1e-16 89.0 131 48.9
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 3.1e-16 89.0 97 59.8
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 5.2e-16 88.2 144 42.4
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 8.9e-16 87.4 99 57.6
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 8.9e-16 87.4 88 50.0
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 1.2e-15 87.0 130 52.3
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.2e-15 87.0 96 58.3
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 1.5e-15 86.7 123 52.0
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 1.5e-15 86.7 132 56.1
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 2.0e-15 86.3 85 57.6
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 2.0e-15 86.3 96 47.9
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 2.6e-15 85.9 126 53.2
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 2.6e-15 85.9 122 59.0
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 3.4e-15 85.5 80 60.0
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 3.4e-15 85.5 87 55.2
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 4.4e-15 85.1 87 72.4
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 5.8e-15 84.7 102 53.9
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 7.6e-15 84.3 103 64.1
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 1.7e-14 83.2 123 44.7
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 2.2e-14 82.8 87 49.4
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 2.2e-14 82.8 137 51.8
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 3.7e-14 82.0 128 41.4
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 3.7e-14 82.0 82 76.8
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 4.9e-14 81.6 94 43.6
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 4.9e-14 81.6 94 58.5
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 6.4e-14 81.3 136 47.8
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 6.4e-14 81.3 136 51.5
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 8.4e-14 80.9 58 77.6
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 1.4e-13 80.1 134 38.1
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 1.4e-13 80.1 134 38.1
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 1.9e-13 79.7 132 50.8
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 1.9e-13 79.7 101 53.5
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 2.4e-13 79.3 134 51.5
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 2.4e-13 79.3 102 54.9
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 7.1e-13 77.8 74 60.8
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 9.2e-13 77.4 134 46.3
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 9.2e-13 77.4 92 43.5
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 1.2e-12 77.0 110 52.7
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 1.6e-12 76.6 68 57.4
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 1.6e-12 76.6 106 40.6
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 1.6e-12 76.6 75 60.0
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 3.5e-12 75.5 107 42.1
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 4.6e-12 75.1 82 58.5
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 6.0e-12 74.7 137 47.4
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 6.0e-12 74.7 83 57.8
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 1.3e-11 73.6 83 63.9
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 1.7e-11 73.2 138 41.3
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 1.7e-11 73.2 68 55.9
FAN24G0346 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.3e-11 72.8 106 50.0
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 1.1e-10 70.5 70 47.1
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 1.9e-10 69.7 98 42.9
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 1.9e-10 69.7 107 38.3
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 4.3e-10 68.6 93 38.7
Gohir.D06G099500 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.6e-09 65.5 67 62.7
MELO3C030460.2 Cucumis melo HOM05D003537 ORTHO05D004180 2.6e-07 59.3 89 49.4
Gohir.A10G065840 Gossypium hirsutum HOM05D003537 ORTHO05D004180 5.8e-07 58.2 51 60.8
Gohir.D08G087900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.2e-06 56.2 66 48.5
Lsat_1_v5_gn_5_30800 Lactuca sativa HOM05D003537 ORTHO05D004180 4.9e-06 55.1 67 41.8


User provided reference genes

Program Settings