Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 4.6e-197 691.0 346 100.0
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 9.9e-184 646.7 356 91.3
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 1.9e-166 589.3 348 86.5
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 2.7e-149 532.3 433 67.2
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 1.1e-145 520.4 355 75.5
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 3.0e-140 502.3 347 74.4
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 1.8e-132 476.5 306 79.1
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 2.8e-130 469.2 268 84.0
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 1.1e-129 467.2 322 74.8
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 2.4e-129 466.1 327 73.7
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 6.9e-129 464.5 322 74.5
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 4.8e-122 441.8 306 74.2
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 5.0e-119 431.8 312 70.5
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 5.5e-118 428.3 345 64.6
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 9.4e-118 427.6 363 63.1
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 6.1e-117 424.9 350 63.7
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 1.0e-116 424.1 325 68.3
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 1.8e-116 423.3 345 64.3
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 3.9e-116 422.2 357 62.5
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 2.0e-115 419.9 335 65.4
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 4.8e-114 415.2 353 63.2
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 1.8e-113 413.3 312 67.9
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.2e-112 410.6 354 61.6
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 3.5e-112 409.1 293 68.9
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 1.0e-111 407.5 301 67.1
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 1.7e-111 406.8 288 69.8
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 2.2e-111 406.4 343 63.3
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 5.0e-111 405.2 264 75.0
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 5.0e-111 405.2 352 59.4
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 6.5e-111 404.8 295 68.5
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 1.5e-110 403.7 296 67.2
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 1.5e-110 403.7 259 76.1
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 1.9e-110 403.3 295 68.1
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 3.2e-110 402.5 362 61.0
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 4.2e-110 402.1 293 71.0
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 5.5e-110 401.7 266 73.7
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 7.2e-110 401.4 347 60.2
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 7.2e-110 401.4 347 60.2
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 1.2e-109 400.6 337 64.1
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 1.2e-109 400.6 264 74.2
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 1.2e-109 400.6 302 68.5
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 2.7e-109 399.4 350 60.0
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 3.6e-109 399.1 276 70.7
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 4.7e-109 398.7 354 62.1
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 5.2e-108 395.2 304 66.4
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 8.8e-108 394.4 259 73.4
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.2e-107 394.0 307 67.8
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 2.0e-107 393.3 256 74.6
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 2.6e-107 392.9 264 73.1
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 3.3e-107 392.5 344 59.6
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 4.4e-107 392.1 307 68.1
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 4.4e-107 392.1 340 60.6
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 5.7e-107 391.7 285 69.8
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 7.5e-107 391.3 324 64.8
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 7.5e-107 391.3 298 61.7
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 9.7e-107 391.0 268 71.6
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.3e-106 390.6 264 74.2
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 1.3e-106 390.6 348 60.6
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 1.7e-106 390.2 304 63.8
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 3.7e-106 389.0 268 69.4
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 3.7e-106 389.0 358 58.1
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 4.8e-106 388.7 307 65.5
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 4.8e-106 388.7 257 73.5
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 3.1e-105 386.0 267 70.0
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 4.1e-105 385.6 287 65.5
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 4.1e-105 385.6 260 71.9
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 5.3e-105 385.2 297 65.7
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 9.1e-105 384.4 297 65.3
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 9.1e-105 384.4 290 67.2
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 2.7e-104 382.9 342 59.4
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 3.5e-104 382.5 296 63.9
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 1.7e-103 380.2 340 60.0
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 3.8e-103 379.0 262 70.2
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 6.5e-103 378.3 285 62.8
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 6.5e-103 378.3 266 71.1
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 8.5e-103 377.9 269 70.6
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 1.5e-102 377.1 270 66.7
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 1.9e-102 376.7 337 56.1
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 1.9e-102 376.7 285 62.8
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 1.9e-102 376.7 337 56.1
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 1.9e-102 376.7 299 61.5
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 2.5e-102 376.3 268 69.0
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 5.5e-102 375.2 260 68.1
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 5.5e-102 375.2 234 74.8
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 5.5e-102 375.2 308 62.7
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 5.5e-102 375.2 273 66.7
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.6e-101 373.6 323 60.1
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 2.1e-101 373.2 260 67.7
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 4.7e-101 372.1 268 66.0
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 6.1e-101 371.7 304 61.8
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 1.0e-100 370.9 248 74.2
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 1.2e-99 367.5 417 51.8
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 1.5e-99 367.1 261 65.1
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 5.7e-99 365.2 210 82.4
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 1.7e-98 363.6 259 68.3
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 1.7e-98 363.6 264 68.2
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 2.2e-98 363.2 326 55.8
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 1.4e-97 360.5 264 66.3
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 3.1e-97 359.4 249 71.1
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 3.3e-94 349.4 334 58.1
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 6.1e-93 345.1 238 69.3
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 6.8e-92 341.7 212 76.4
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 4.1e-89 332.4 283 55.8
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.6e-88 330.5 283 56.2
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 3.5e-88 329.3 283 55.5
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 6.8e-84 315.1 264 59.5
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 1.7e-82 310.5 228 68.4
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 5.4e-81 305.4 353 53.5
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 1.3e-79 300.8 234 62.4
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 3.9e-79 299.3 190 73.2
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 2.6e-75 286.6 315 51.1
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 2.4e-73 280.0 314 47.5
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 5.2e-68 262.3 208 59.1
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 2.6e-67 260.0 235 55.3
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 1.1e-62 244.6 229 52.8
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 8.7e-55 218.4 265 46.8
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 9.9e-51 204.9 214 49.5
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 2.2e-50 203.8 145 69.0
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 7.1e-49 198.7 119 78.2
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 8.1e-45 185.3 119 74.8
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 6.7e-39 165.6 160 55.0
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 4.2e-25 119.8 83 67.5
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 1.2e-24 118.2 72 83.3
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 2.0e-19 100.9 68 72.1
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 2.9e-18 97.1 160 40.0
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.1e-17 95.1 61 72.1
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.1e-17 95.1 61 72.1
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 1.0e-15 88.6 148 35.8
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.4e-15 88.2 78 61.5
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 9.7e-14 82.0 190 32.1
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 1.7e-13 81.3 192 31.2
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 2.8e-13 80.5 231 30.3
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 3.7e-13 80.1 233 28.8
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 1.4e-12 78.2 189 31.2
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 2.4e-12 77.4 192 30.7
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 3.1e-12 77.0 212 27.8
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 5.3e-12 76.3 131 35.9
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 9.1e-12 75.5 186 30.6
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 1.2e-11 75.1 131 35.1
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 2.0e-11 74.3 212 29.2
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 2.6e-11 73.9 225 27.6
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 2.6e-11 73.9 185 30.3
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 2.6e-11 73.9 184 31.0
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 3.4e-11 73.6 116 37.1
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 4.5e-11 73.2 204 29.4
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 5.9e-11 72.8 190 31.1
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 5.9e-11 72.8 196 30.6
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 5.9e-11 72.8 131 33.6
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 5.9e-11 72.8 198 29.8
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.0e-10 72.0 187 29.4
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 1.0e-10 72.0 219 28.8
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 1.0e-10 72.0 186 29.0
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 1.3e-10 71.6 193 29.5
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 1.3e-10 71.6 193 29.5
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 1.3e-10 71.6 186 29.0
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 2.2e-10 70.9 201 28.4
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 2.2e-10 70.9 184 30.4
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 2.2e-10 70.9 184 29.3
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 2.9e-10 70.5 186 29.6
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 2.9e-10 70.5 201 27.9
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 3.8e-10 70.1 215 25.6
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 5.0e-10 69.7 190 28.9
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 1.1e-09 68.6 126 31.7
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 1.1e-09 68.6 231 29.0
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 2.5e-09 67.4 116 33.6
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 3.2e-09 67.0 192 29.2
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 3.2e-09 67.0 180 30.6
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 7.2e-09 65.9 266 22.9
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 2.1e-08 64.3 137 32.1
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 2.7e-08 63.9 180 27.8
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 4.7e-08 63.2 59 52.5
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 6.1e-08 62.8 121 32.2
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 6.1e-08 62.8 107 31.8
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 1.0e-07 62.0 90 36.7
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 3.0e-07 60.5 178 28.1
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 1.5e-06 58.2 96 36.5
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 1.5e-06 58.2 106 31.1
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 7.4e-06 55.8 254 22.8


User provided reference genes

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