Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 5.9e-86 320.9 164 100.0
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 6.3e-64 247.7 130 93.8
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 6.3e-64 247.7 130 93.8
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 1.8e-63 246.1 130 93.1
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 5.3e-63 244.6 130 92.3
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 5.3e-63 244.6 130 92.3
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 1.6e-62 243.0 130 91.5
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 5.9e-62 241.1 130 90.8
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 2.2e-61 239.2 130 90.8
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 1.9e-60 236.1 130 88.5
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 2.3e-58 229.2 130 87.7
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 2.3e-58 229.2 130 87.7
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 2.3e-58 229.2 130 84.6
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 6.8e-58 227.6 130 85.4
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 6.8e-58 227.6 130 85.4
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 6.8e-58 227.6 130 85.4
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 8.8e-58 227.3 130 86.9
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 1.5e-57 226.5 145 80.0
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 3.4e-57 225.3 130 84.6
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 4.4e-57 224.9 132 84.1
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 5.7e-57 224.6 130 84.6
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 7.5e-57 224.2 130 83.8
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 9.8e-57 223.8 130 83.8
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 1.3e-56 223.4 130 82.3
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 1.3e-56 223.4 130 83.8
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 2.2e-56 222.6 130 82.3
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 2.2e-56 222.6 130 82.3
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 2.2e-56 222.6 130 82.3
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 2.2e-56 222.6 130 82.3
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 2.2e-56 222.6 130 83.8
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 3.7e-56 221.9 132 81.8
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 3.7e-56 221.9 132 81.8
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 3.7e-56 221.9 130 83.8
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 4.8e-56 221.5 155 74.8
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 4.8e-56 221.5 130 83.8
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 6.3e-56 221.1 155 74.8
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 6.3e-56 221.1 155 74.8
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 8.3e-56 220.7 127 83.5
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 8.3e-56 220.7 130 83.1
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 1.4e-55 219.9 114 95.6
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 1.8e-55 219.5 119 91.6
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 3.1e-55 218.8 130 82.3
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 4.1e-55 218.4 155 74.2
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 5.4e-55 218.0 130 81.5
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 5.4e-55 218.0 130 80.8
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 5.4e-55 218.0 155 72.9
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 7.0e-55 217.6 155 72.9
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 9.1e-55 217.2 130 81.5
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 9.1e-55 217.2 155 73.5
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 1.2e-54 216.9 130 81.5
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 1.6e-54 216.5 130 80.0
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 2.0e-54 216.1 130 81.5
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 2.0e-54 216.1 153 71.9
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 2.0e-54 216.1 153 71.9
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 2.7e-54 215.7 130 80.0
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 3.5e-54 215.3 155 74.2
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 3.5e-54 215.3 155 74.2
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 3.5e-54 215.3 155 74.2
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 3.5e-54 215.3 131 80.2
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 3.5e-54 215.3 153 72.5
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 4.5e-54 214.9 130 80.0
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 4.5e-54 214.9 130 81.5
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 7.7e-54 214.2 130 80.0
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 7.7e-54 214.2 153 72.5
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 7.7e-54 214.2 130 80.0
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 1.3e-53 213.4 131 78.6
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 1.7e-53 213.0 130 79.2
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 1.7e-53 213.0 135 76.3
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 2.3e-53 212.6 130 79.2
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 2.3e-53 212.6 131 79.4
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 2.9e-53 212.2 130 79.2
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 2.9e-53 212.2 130 79.2
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 2.9e-53 212.2 130 80.0
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 3.8e-53 211.8 130 78.5
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 6.5e-53 211.1 130 79.2
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 8.6e-53 210.7 130 78.5
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 8.6e-53 210.7 130 78.5
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 8.6e-53 210.7 130 78.5
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 8.6e-53 210.7 130 78.5
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 8.6e-53 210.7 130 78.5
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 8.6e-53 210.7 130 78.5
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 1.1e-52 210.3 130 78.5
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 1.5e-52 209.9 130 77.7
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 2.5e-52 209.1 130 79.2
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 3.3e-52 208.8 130 79.2
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 3.3e-52 208.8 155 70.3
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 4.2e-52 208.4 130 76.9
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 4.2e-52 208.4 155 70.3
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 7.2e-52 207.6 130 78.5
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 9.5e-52 207.2 130 78.5
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 1.2e-51 206.8 155 69.0
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 3.6e-51 205.3 130 77.7
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 1.0e-50 203.8 155 70.3
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 1.4e-50 203.4 130 76.9
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 3.0e-50 202.2 130 74.6
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 4.4e-49 198.4 130 73.8
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 8.3e-48 194.1 131 71.0
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 2.4e-47 192.6 128 71.9
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 2.4e-47 192.6 133 72.2
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 7.0e-47 191.0 131 73.3
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 7.0e-47 191.0 131 71.0
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 3.5e-46 188.7 130 70.8
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 2.3e-45 186.0 131 68.7
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 2.3e-45 186.0 101 92.1
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 1.1e-44 183.7 130 69.2
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 1.5e-44 183.3 131 70.2
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 2.1e-43 179.5 130 69.2
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 8.3e-40 167.5 132 64.4
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 1.8e-39 166.4 132 65.2
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 3.2e-39 165.6 96 82.3
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 1.2e-35 153.7 102 76.5
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 6.2e-35 151.4 138 58.7
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 8.0e-35 151.0 94 78.7
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 3.4e-33 145.6 99 69.7
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 4.4e-33 145.2 131 58.8
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 6.0e-30 134.8 129 53.5
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 1.1e-28 130.6 89 74.2
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 4.4e-25 118.6 133 51.1
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 5.4e-23 111.7 102 56.9
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 2.1e-22 109.8 67 77.6
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 6.0e-22 108.2 79 68.4
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 2.8e-19 99.4 53 83.0
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 1.4e-18 97.1 134 38.8
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 1.7e-13 80.1 94 50.0
HPP92_020839 Vanilla planifolia HOM05D005529 ORTHO05D006800 6.6e-13 78.2 55 69.1
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 1.1e-12 77.4 151 33.1
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 2.9e-08 62.8 28 92.9
MD10G1041000 Malus domestica HOM05D005529 ORTHO05D006800 1.9e-07 60.1 37 73.0


User provided reference genes

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