Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 0.0e+00 1292.7 651 100.0
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 0.0e+00 1224.2 653 94.6
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 0.0e+00 1158.7 653 89.7
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 0.0e+00 1102.0 660 85.2
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 0.0e+00 1100.1 654 85.3
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 0.0e+00 1083.2 653 83.9
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 1.3e-306 1055.8 658 82.1
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 1.1e-305 1052.7 579 90.8
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 8.0e-304 1046.6 677 77.5
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 3.0e-298 1028.1 658 79.0
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 1.6e-296 1022.3 678 75.2
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 3.4e-294 1014.6 678 74.9
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 2.1e-291 1005.4 679 74.7
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 5.1e-290 1000.7 681 74.2
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 7.3e-289 996.9 647 76.0
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 6.2e-288 993.8 695 73.4
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 5.2e-287 990.7 681 73.3
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 6.8e-287 990.3 681 74.3
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 1.5e-286 989.2 673 74.3
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 2.6e-286 988.4 673 74.3
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 5.8e-286 987.3 681 73.0
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 1.7e-285 985.7 681 73.0
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 4.9e-285 984.2 659 73.3
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 4.6e-283 977.6 687 72.5
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 6.0e-283 977.2 680 73.5
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 3.0e-282 974.9 679 72.8
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.1e-281 973.0 682 72.6
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 2.5e-281 971.8 677 72.8
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 2.5e-281 971.8 679 73.3
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 4.3e-281 971.1 679 72.6
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 2.8e-280 968.4 670 73.9
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 6.2e-280 967.2 691 72.1
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 3.1e-279 964.9 680 71.3
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 4.0e-279 964.5 653 73.8
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 5.2e-279 964.1 662 73.7
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 8.9e-279 963.4 669 72.2
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 1.5e-278 962.6 669 72.0
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 1.5e-278 962.6 668 72.3
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 3.4e-278 961.4 654 74.5
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 3.8e-277 958.0 668 72.6
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 2.4e-276 955.3 650 73.7
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 9.3e-276 953.4 668 72.2
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 1.5e-273 946.0 601 78.9
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 3.3e-273 944.9 672 69.8
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 3.3e-273 944.9 659 71.9
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 2.8e-272 941.8 606 76.6
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 6.2e-272 940.6 619 75.1
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 5.3e-271 937.6 644 73.6
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 5.3e-271 937.6 631 73.5
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 6.9e-271 937.2 671 69.7
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 9.0e-271 936.8 650 71.7
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 1.2e-270 936.4 658 71.7
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 2.0e-270 935.6 631 73.5
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 4.5e-270 934.5 631 73.2
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 1.3e-269 932.9 632 72.9
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 8.4e-269 930.2 651 71.1
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 2.4e-268 928.7 607 76.6
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 7.1e-268 927.2 626 72.8
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 7.9e-267 923.7 628 74.7
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 3.3e-265 918.3 656 70.1
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 1.6e-264 916.0 653 70.6
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 4.8e-264 914.4 653 70.9
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 8.1e-264 913.7 653 70.1
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.4e-263 912.9 651 70.8
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 2.4e-263 912.1 631 72.3
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 5.3e-263 911.0 638 71.9
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 6.9e-263 910.6 653 70.3
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 1.5e-262 909.4 662 69.9
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 2.2e-261 905.6 634 71.3
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 2.9e-261 905.2 653 70.4
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 2.9e-261 905.2 649 69.3
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 3.8e-261 904.8 652 69.9
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.4e-260 902.9 655 69.5
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 1.9e-260 902.5 543 82.3
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 4.2e-260 901.4 590 75.3
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 1.2e-259 899.8 601 75.4
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 7.9e-259 897.1 633 69.7
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 1.3e-258 896.3 652 68.9
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 3.0e-258 895.2 634 69.9
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 5.1e-258 894.4 625 70.7
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 6.7e-258 894.0 635 70.2
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 8.7e-258 893.6 634 69.6
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 3.3e-257 891.7 631 70.5
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 3.3e-257 891.7 631 70.4
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 4.8e-256 887.9 634 69.4
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 4.8e-256 887.9 628 70.5
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 4.5e-254 881.3 635 69.1
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 1.5e-249 866.3 606 70.8
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 4.3e-249 864.8 605 70.4
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 5.7e-249 864.4 680 65.7
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 1.1e-247 860.1 600 72.2
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 2.2e-245 852.4 517 81.2
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 8.2e-240 833.9 607 67.9
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 6.9e-239 830.9 742 59.6
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 7.7e-238 827.4 650 67.4
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 2.0e-222 776.2 657 61.2
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 4.5e-222 775.0 647 61.5
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 2.6e-217 759.2 653 62.8
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 1.3e-216 756.9 650 60.9
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 2.3e-210 736.1 728 52.9
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 3.0e-210 735.7 472 78.2
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 2.3e-205 719.5 763 49.5
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 3.8e-205 718.8 758 49.3
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 8.8e-202 707.6 838 47.3
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 3.4e-201 705.7 591 60.6
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 2.0e-198 696.4 859 44.5
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 4.5e-198 695.3 453 75.5
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 1.6e-187 660.2 630 52.9
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 6.2e-171 605.1 425 71.8
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 6.6e-165 585.1 521 58.7
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 3.6e-155 552.7 549 51.7
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 5.3e-154 548.9 437 65.9
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 6.9e-122 442.2 309 70.6
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 4.2e-119 433.0 263 81.7
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 2.1e-118 430.6 374 61.8
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 6.7e-109 399.1 317 62.1
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 7.0e-98 362.5 259 70.7
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 3.5e-89 333.6 215 74.4
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 4.0e-85 320.1 338 50.3
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 9.8e-84 315.5 531 39.2
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 3.6e-62 243.8 155 73.5
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 1.1e-39 169.1 135 64.4
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 1.5e-39 168.7 435 30.1
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.3e-35 155.6 151 55.0
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 1.6e-14 85.5 66 66.7
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 1.4e-13 82.4 77 58.4
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.0e-08 66.2 49 63.3
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 8.8e-08 63.2 47 59.6
Potri.001G289250 Populus trichocarpa HOM05D005975 ORTHO05D007373 2.2e-06 58.5 48 58.3


User provided reference genes

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