Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G207900 Glycine max HOM05D003373 ORTHO05D004419 4.5e-36 154.1 78 100.0
Glyma.02G022800 Glycine max HOM05D003373 ORTHO05D004419 1.5e-18 95.9 66 77.3
Glyma.01G041300 Glycine max HOM05D003373 ORTHO05D004419 8.3e-14 80.1 56 76.8
Psat2g126240 Pisum sativum HOM05D003373 ORTHO05D004419 5.6e-10 67.4 70 52.9
Medtr5g037960 Medicago truncatula HOM05D003373 ORTHO05D004419 1.2e-09 66.2 72 50.0
CDE08G0466 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 4.7e-09 64.3 61 54.1
Lj2g0024788 Lotus japonicus HOM05D003373 ORTHO05D004419 4.7e-09 64.3 49 67.3
QL03p066330 Quercus lobata HOM05D003373 ORTHO05D004419 4.7e-09 64.3 50 62.0
Duzib248G1211 Durio zibethinus HOM05D003373 ORTHO05D004419 6.2e-09 63.9 74 48.6
CiPaw.06G080000 Carya illinoinensis HOM05D003373 ORTHO05D004419 8.0e-09 63.5 49 65.3
CiPaw.05G141000 Carya illinoinensis HOM05D003373 ORTHO05D004419 1.0e-08 63.2 65 50.8
Hma1.2p1_1045F.1_g251400 Hydrangea macrophylla HOM05D003373 ORTHO05D004419 1.0e-08 63.2 74 47.3
Duzib251G0793 Durio zibethinus HOM05D003373 ORTHO05D004419 1.4e-08 62.8 68 50.0
Sed0023513 Sechium edule HOM05D003373 ORTHO05D004419 1.8e-08 62.4 49 59.2
Aqoxy3G03242 Aquilegia oxysepala HOM05D003373 ORTHO05D004419 2.3e-08 62.0 70 50.0
Thecc.02G234000 Theobroma cacao HOM05D003373 ORTHO05D004419 2.3e-08 62.0 84 46.4
CDE09G0772 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 4.0e-08 61.2 61 52.5
ClCG05G024690 Citrullus lanatus HOM05D003373 ORTHO05D004419 4.0e-08 61.2 49 59.2
Nn3g17111 Nelumbo nucifera HOM05D003373 ORTHO05D004419 4.0e-08 61.2 49 61.2
TPR.G31079 Trifolium pratense HOM05D003373 ORTHO05D004419 4.0e-08 61.2 56 62.5
Duzib268G0991 Durio zibethinus HOM05D003373 ORTHO05D004419 5.2e-08 60.8 68 50.0
TAR374G1081 Trochodendron aralioides HOM05D003373 ORTHO05D004419 6.8e-08 60.5 55 54.5
arahy.Tifrunner.gnm1.ann1.NIK4ZB Arachis hypogaea HOM05D003373 ORTHO05D004419 8.9e-08 60.1 48 62.5
Gohir.D05G323100 Gossypium hirsutum HOM05D003373 ORTHO05D004419 1.2e-07 59.7 49 61.2
Gorai.009G346800 Gossypium raimondii HOM05D003373 ORTHO05D004419 1.2e-07 59.7 49 61.2
Lalb_Chr10g0097901 Lupinus albus HOM05D003373 ORTHO05D004419 1.2e-07 59.7 67 50.7
Phvul.002G067800 Phaseolus vulgaris HOM05D003373 ORTHO05D004419 1.2e-07 59.7 48 66.7
Actinidia31168 Actinidia chinensis HOM05D003373 ORTHO05D004419 1.5e-07 59.3 49 59.2
CsaV3_5G032210 Cucumis sativus L. HOM05D003373 ORTHO05D004419 1.5e-07 59.3 69 46.4
Gohir.A05G320900 Gossypium hirsutum HOM05D003373 ORTHO05D004419 1.5e-07 59.3 75 46.7
Lj6A795T73 Lonicera japonica HOM05D003373 ORTHO05D004419 1.5e-07 59.3 74 44.6
Nn4g23016 Nelumbo nucifera HOM05D003373 ORTHO05D004419 1.5e-07 59.3 49 59.2
TAR622G0593 Trochodendron aralioides HOM05D003373 ORTHO05D004419 1.5e-07 59.3 49 55.1
arahy.Tifrunner.gnm1.ann1.YF4WKN Arachis hypogaea HOM05D003373 ORTHO05D004419 2.0e-07 58.9 48 60.4
Cfa009067 Carpinus fangiana HOM05D003373 ORTHO05D004419 2.0e-07 58.9 49 57.1
Ca_04701_v3 Cicer arietinum L. HOM05D003373 ORTHO05D004419 2.0e-07 58.9 49 63.3
Ciclev10031519m.g Citrus clementina HOM05D003373 ORTHO05D004419 2.0e-07 58.9 62 51.6
TAR629G0400 Trochodendron aralioides HOM05D003373 ORTHO05D004419 2.0e-07 58.9 49 55.1
Atru.chr11.1870 Acer truncatum HOM05D003373 ORTHO05D004419 2.6e-07 58.5 50 62.0
Gohir.D04G137300 Gossypium hirsutum HOM05D003373 ORTHO05D004419 2.6e-07 58.5 73 46.6
Sabra10G0029900 Salix brachista HOM05D003373 ORTHO05D004419 2.6e-07 58.5 49 55.1
MELO3C012054.2 Cucumis melo HOM05D003373 ORTHO05D004419 3.4e-07 58.2 47 59.6
Potri.008G194200 Populus trichocarpa HOM05D003373 ORTHO05D004419 3.4e-07 58.2 49 53.1
Potri.010G034900 Populus trichocarpa HOM05D003373 ORTHO05D004419 3.4e-07 58.2 49 55.1
Sabra08G0147700 Salix brachista HOM05D003373 ORTHO05D004419 3.4e-07 58.2 49 53.1
VMungo1215G0200 Vigna mungo HOM05D003373 ORTHO05D004419 4.4e-07 57.8 63 52.4
Ah.02g131980 Amaranthus hybridus HOM05D003373 ORTHO05D004419 5.8e-07 57.4 49 61.2
BcaC07g39253 Brassica carinata HOM05D003373 ORTHO05D004419 5.8e-07 57.4 63 47.6
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 5.8e-07 57.4 59 49.2
BolC8t49893H Brassica oleracea HOM05D003373 ORTHO05D004419 5.8e-07 57.4 63 47.6
CANSAT35G1086 Cannabis sativa HOM05D003373 ORTHO05D004419 7.5e-07 57.0 72 41.7
Haze_12097 Corylus avellana HOM05D003373 ORTHO05D004419 7.5e-07 57.0 70 44.3
Lalb_Chr04g0256431 Lupinus albus HOM05D003373 ORTHO05D004419 7.5e-07 57.0 64 51.6
PSO017G0861 Papaver somniferum HOM05D003373 ORTHO05D004419 7.5e-07 57.0 54 55.6
PSO478G2017 Papaver somniferum HOM05D003373 ORTHO05D004419 7.5e-07 57.0 54 55.6
PSO591G0008 Papaver somniferum HOM05D003373 ORTHO05D004419 7.5e-07 57.0 52 55.8
BcaB07g32385 Brassica carinata HOM05D003373 ORTHO05D004419 9.8e-07 56.6 62 50.0
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 9.8e-07 56.6 56 51.8
AUR62026278 Chenopodium quinoa HOM05D003373 ORTHO05D004419 9.8e-07 56.6 74 44.6
COL.COLO4_36201 Corchorus olitorius HOM05D003373 ORTHO05D004419 9.8e-07 56.6 68 47.1
DCAR_007126 Daucus carota HOM05D003373 ORTHO05D004419 9.8e-07 56.6 67 46.3
Nitab4.5_0000710g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 9.8e-07 56.6 64 45.3
Lalb_Chr17g0340241 Lupinus albus HOM05D003373 ORTHO05D004419 1.3e-06 56.2 48 58.3
Nitab4.5_0003297g0010 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.3e-06 56.2 64 46.9
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 1.7e-06 55.8 52 53.8
PSO832G2541 Papaver somniferum HOM05D003373 ORTHO05D004419 1.7e-06 55.8 52 53.8
Actinidia04028 Actinidia chinensis HOM05D003373 ORTHO05D004419 2.2e-06 55.5 70 45.7
BcaC05g26344 Brassica carinata HOM05D003373 ORTHO05D004419 2.2e-06 55.5 49 55.1
BolC5t31088H Brassica oleracea HOM05D003373 ORTHO05D004419 2.2e-06 55.5 49 55.1
MBI01_g01238_MAGBIO Magnolia biondii HOM05D003373 ORTHO05D004419 2.2e-06 55.5 67 47.8
Manes.05G095400 Manihot esculenta HOM05D003373 ORTHO05D004419 2.2e-06 55.5 76 42.1
Sp1g21690 Schrenkiella parvula HOM05D003373 ORTHO05D004419 2.2e-06 55.5 67 44.8
AUR62026466 Chenopodium quinoa HOM05D003373 ORTHO05D004419 2.9e-06 55.1 72 45.8
Dinv34191 Davidia involucrata HOM05D003373 ORTHO05D004419 2.9e-06 55.1 49 51.0
Gohir.A04G097600 Gossypium hirsutum HOM05D003373 ORTHO05D004419 2.9e-06 55.1 73 45.2
Gorai.012G121700 Gossypium raimondii HOM05D003373 ORTHO05D004419 2.9e-06 55.1 73 43.8
Oeu057174.1 Olea europaea HOM05D003373 ORTHO05D004419 2.9e-06 55.1 76 43.4
EL10Ac6g13134 Beta vulgaris HOM05D003373 ORTHO05D004419 3.7e-06 54.7 57 49.1
Cpa.g.sc5.285 Carica papaya HOM05D003373 ORTHO05D004419 4.9e-06 54.3 49 51.0
Manes.01G192000 Manihot esculenta HOM05D003373 ORTHO05D004419 4.9e-06 54.3 49 53.1
Aa31LG4G10950 Aethionema arabicum HOM05D003373 ORTHO05D004419 6.4e-06 53.9 49 51.0
AL1G38400 Arabidopsis lyrata HOM05D003373 ORTHO05D004419 6.4e-06 53.9 61 42.6
BcaB03g11980 Brassica carinata HOM05D003373 ORTHO05D004419 6.4e-06 53.9 49 53.1
Eucgr.B02587 Eucalyptus grandis HOM05D003373 ORTHO05D004419 6.4e-06 53.9 49 55.1
AT1G27090 Arabidopsis thaliana HOM05D003373 ORTHO05D004419 8.3e-06 53.5 68 44.1
MSTRG.2363 Avicennia marina HOM05D003373 ORTHO05D004419 8.3e-06 53.5 58 50.0
A08p27730 Brassica napus HOM05D003373 ORTHO05D004419 8.3e-06 53.5 68 45.6
BraA08t34708Z Brassica rapa HOM05D003373 ORTHO05D004419 8.3e-06 53.5 68 45.6
Carub.0001s2388 Capsella rubella HOM05D003373 ORTHO05D004419 8.3e-06 53.5 49 53.1


User provided reference genes

Program Settings