Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G207751 Glycine max HOM05D003599 ORTHO05D004221 6.9e-75 283.9 142 100.0
Glyma.20G040200 Glycine max HOM05D003599 ORTHO05D004221 1.5e-69 266.2 140 94.3
Glyma.15G271800 Glycine max HOM05D003599 ORTHO05D004221 1.3e-68 263.1 140 92.1
Phvul.005G037000 Phaseolus vulgaris HOM05D003599 ORTHO05D004221 1.5e-66 256.1 140 89.3
Glyma.08G152400 Glycine max HOM05D003599 ORTHO05D004221 4.5e-66 254.6 140 90.0
VMungo1080G1621 Vigna mungo HOM05D003599 ORTHO05D004221 1.2e-63 246.5 140 85.0
Glyma.03G039901 Glycine max HOM05D003599 ORTHO05D004221 1.3e-62 243.0 123 96.7
Ca_26231_v3 Cicer arietinum L. HOM05D003599 ORTHO05D004221 2.0e-58 229.2 141 82.3
Lj3g0018349 Lotus japonicus HOM05D003599 ORTHO05D004221 4.5e-58 228.0 141 80.9
Glyma.11G137151 Glycine max HOM05D003599 ORTHO05D004221 7.6e-58 227.3 119 95.8
Lalb_Chr25g0283241 Lupinus albus HOM05D003599 ORTHO05D004221 1.7e-57 226.1 142 79.6
TPR.G26308 Trifolium pratense HOM05D003599 ORTHO05D004221 2.9e-57 225.3 138 83.3
TPR.G20345 Trifolium pratense HOM05D003599 ORTHO05D004221 9.3e-56 220.3 138 80.4
Lalb_Chr20g0108091 Lupinus albus HOM05D003599 ORTHO05D004221 1.2e-55 219.9 142 77.5
Psat5g207160 Pisum sativum HOM05D003599 ORTHO05D004221 2.7e-55 218.8 141 78.7
arahy.Tifrunner.gnm1.ann1.V362W9 Arachis hypogaea HOM05D003599 ORTHO05D004221 1.5e-53 213.0 141 79.4
arahy.Tifrunner.gnm1.ann1.X69RYV Arachis hypogaea HOM05D003599 ORTHO05D004221 1.5e-53 213.0 141 79.4
Medtr3g027610 Medicago truncatula HOM05D003599 ORTHO05D004221 5.3e-51 204.5 137 77.4
Lj3g0008997 Lotus japonicus HOM05D003599 ORTHO05D004221 9.1e-51 203.8 146 73.3
Prupe.2G007800 Prunus persica HOM05D003599 ORTHO05D004221 1.0e-49 200.3 132 77.3
vmacro13648 Vaccinium macrocarpon HOM05D003599 ORTHO05D004221 2.9e-49 198.7 140 71.4
Haze_03250 Corylus avellana HOM05D003599 ORTHO05D004221 5.0e-49 198.0 137 75.9
arahy.Tifrunner.gnm1.ann1.SKP1EQ Arachis hypogaea HOM05D003599 ORTHO05D004221 3.2e-48 195.3 135 72.6
QL04p003920 Quercus lobata HOM05D003599 ORTHO05D004221 3.2e-48 195.3 125 78.4
QL04p004288 Quercus lobata HOM05D003599 ORTHO05D004221 3.2e-48 195.3 125 78.4
arahy.Tifrunner.gnm1.ann1.7I49QA Arachis hypogaea HOM05D003599 ORTHO05D004221 9.4e-48 193.7 135 71.9
Rhsim07G0053800 Rhododendron simsii HOM05D003599 ORTHO05D004221 1.6e-47 193.0 137 73.0
CSS0018905 Camellia sinensis var. sinensis HOM05D003599 ORTHO05D004221 2.7e-47 192.2 137 73.0
MD02G1316400 Malus domestica HOM05D003599 ORTHO05D004221 3.6e-47 191.8 141 72.3
RcHm_v2.0_Chr4g0410621 Rosa chinensis HOM05D003599 ORTHO05D004221 4.6e-47 191.4 130 75.4
MD07G1005500 Malus domestica HOM05D003599 ORTHO05D004221 3.0e-46 188.7 142 72.5
Dinv43470 Davidia involucrata HOM05D003599 ORTHO05D004221 3.9e-46 188.3 136 69.1
Potri.009G065300 Populus trichocarpa HOM05D003599 ORTHO05D004221 3.9e-46 188.3 132 70.5
Manes.07G003200 Manihot esculenta HOM05D003599 ORTHO05D004221 8.8e-46 187.2 143 69.2
CiPaw.13G001900 Carya illinoinensis HOM05D003599 ORTHO05D004221 1.5e-45 186.4 137 70.8
GSVIVG01032046001 Vitis vinifera HOM05D003599 ORTHO05D004221 1.5e-45 186.4 139 71.9
Thecc.01G414600 Theobroma cacao HOM05D003599 ORTHO05D004221 4.4e-45 184.9 143 69.2
Dinv09382 Davidia involucrata HOM05D003599 ORTHO05D004221 5.7e-45 184.5 136 69.1
Cc02_g27450 Coffea canephora HOM05D003599 ORTHO05D004221 2.2e-44 182.6 139 70.5
Sabra09G0048500 Salix brachista HOM05D003599 ORTHO05D004221 2.2e-44 182.6 132 69.7
COL.COLO4_23904 Corchorus olitorius HOM05D003599 ORTHO05D004221 4.8e-44 181.4 139 69.1
FvH4_4g12380 Fragaria vesca HOM05D003599 ORTHO05D004221 4.8e-44 181.4 145 68.3
FAN12G0010 Fragaria x ananassa HOM05D003599 ORTHO05D004221 4.8e-44 181.4 145 68.3
FAN12G0382 Fragaria x ananassa HOM05D003599 ORTHO05D004221 4.8e-44 181.4 145 68.3
FAN22G1903 Fragaria x ananassa HOM05D003599 ORTHO05D004221 6.3e-44 181.0 144 67.4
Solyc01g086750.4 Solanum lycopersicum HOM05D003599 ORTHO05D004221 8.2e-44 180.6 136 71.3
ClCG10G012550 Citrullus lanatus HOM05D003599 ORTHO05D004221 1.4e-43 179.9 136 67.6
FAN07G2146 Fragaria x ananassa HOM05D003599 ORTHO05D004221 1.8e-43 179.5 145 67.6
FAN17G0189 Fragaria x ananassa HOM05D003599 ORTHO05D004221 3.1e-43 178.7 144 66.7
Sopen01g033750 Solanum pennellii HOM05D003599 ORTHO05D004221 3.1e-43 178.7 137 70.1
TAR369G0496 Trochodendron aralioides HOM05D003599 ORTHO05D004221 3.1e-43 178.7 137 69.3
Sed0001465 Sechium edule HOM05D003599 ORTHO05D004221 4.1e-43 178.3 134 68.7
Eucgr.J01252 Eucalyptus grandis HOM05D003599 ORTHO05D004221 5.3e-43 177.9 134 69.4
MELO3C023955.2 Cucumis melo HOM05D003599 ORTHO05D004221 6.9e-43 177.6 136 66.2
Nitab4.5_0001542g0140 Nicotiana tabacum HOM05D003599 ORTHO05D004221 6.9e-43 177.6 135 69.6
CsaV3_3G032340 Cucumis sativus L. HOM05D003599 ORTHO05D004221 9.1e-43 177.2 136 66.2
Duzib268G0099 Durio zibethinus HOM05D003599 ORTHO05D004221 1.2e-42 176.8 146 65.8
Gohir.D08G167000 Gossypium hirsutum HOM05D003599 ORTHO05D004221 1.5e-42 176.4 106 79.2
Gorai.004G174400 Gossypium raimondii HOM05D003599 ORTHO05D004221 1.5e-42 176.4 106 79.2
Potri.001G271200 Populus trichocarpa HOM05D003599 ORTHO05D004221 2.0e-42 176.0 131 71.8
TWI73G0659 Tripterygium wilfordii HOM05D003599 ORTHO05D004221 2.0e-42 176.0 131 70.2
TWI53G1897 Tripterygium wilfordii HOM05D003599 ORTHO05D004221 3.4e-42 175.3 131 70.2
Atru.chr11.2631 Acer truncatum HOM05D003599 ORTHO05D004221 5.9e-42 174.5 110 76.4
PGR044G0248 Punica granatum HOM05D003599 ORTHO05D004221 7.7e-42 174.1 108 76.9
Sc11g0009360 Simmondsia chinensis HOM05D003599 ORTHO05D004221 7.7e-42 174.1 149 63.8
ECA248G3304 Erigeron canadensis HOM05D003599 ORTHO05D004221 1.0e-41 173.7 138 67.4
CANSAT56G1134 Cannabis sativa HOM05D003599 ORTHO05D004221 1.7e-41 172.9 132 69.7
HanXRQChr01g0017271 Helianthus annuus HOM05D003599 ORTHO05D004221 1.7e-41 172.9 122 71.3
AL5G32710 Arabidopsis lyrata HOM05D003599 ORTHO05D004221 2.2e-41 172.6 88 89.8
Nitab4.5_0004883g0020 Nicotiana tabacum HOM05D003599 ORTHO05D004221 2.2e-41 172.6 135 68.1
Oeu034893.1 Olea europaea HOM05D003599 ORTHO05D004221 3.8e-41 171.8 139 66.2
MSTRG.17057 Avicennia marina HOM05D003599 ORTHO05D004221 6.5e-41 171.0 139 64.7
BcaNung06096 Brassica carinata HOM05D003599 ORTHO05D004221 8.5e-41 170.6 93 83.9
Aa31LG10G7230 Aethionema arabicum HOM05D003599 ORTHO05D004221 1.1e-40 170.2 136 67.6
Sp5g10140 Schrenkiella parvula HOM05D003599 ORTHO05D004221 1.1e-40 170.2 139 62.6
THA.LOC104801983 Tarenaya hassleriana HOM05D003599 ORTHO05D004221 1.1e-40 170.2 141 64.5
CARHR161880 Cardamine hirsuta HOM05D003599 ORTHO05D004221 1.4e-40 169.9 136 64.7
Migut.B01342 Erythranthe guttata HOM05D003599 ORTHO05D004221 1.4e-40 169.9 138 65.9
Thhalv10010065m.g Eutrema salsugineum HOM05D003599 ORTHO05D004221 1.4e-40 169.9 135 66.7
Carub.0005s1848 Capsella rubella HOM05D003599 ORTHO05D004221 1.9e-40 169.5 144 61.8
Aqoxy1G00213 Aquilegia oxysepala HOM05D003599 ORTHO05D004221 4.2e-40 168.3 135 67.4
BcaB02g08585 Brassica carinata HOM05D003599 ORTHO05D004221 4.2e-40 168.3 108 76.9
A09p45200 Brassica napus HOM05D003599 ORTHO05D004221 4.2e-40 168.3 134 64.9
BraA09t39983Z Brassica rapa HOM05D003599 ORTHO05D004221 4.2e-40 168.3 134 64.9
Ciclev10030514m.g Citrus clementina HOM05D003599 ORTHO05D004221 5.5e-40 167.9 131 66.4
Lsat_1_v5_gn_1_110320 Lactuca sativa HOM05D003599 ORTHO05D004221 5.5e-40 167.9 141 64.5
DCAR_029635 Daucus carota HOM05D003599 ORTHO05D004221 7.2e-40 167.5 134 65.7
Lj7C568T3 Lonicera japonica HOM05D003599 ORTHO05D004221 7.2e-40 167.5 136 66.2
PSO339G0158 Papaver somniferum HOM05D003599 ORTHO05D004221 7.2e-40 167.5 108 76.9
SGA_v2.0_scaffold260G45866 Striga asiatica HOM05D003599 ORTHO05D004221 7.2e-40 167.5 140 62.9
AT3G52140 Arabidopsis thaliana HOM05D003599 ORTHO05D004221 9.4e-40 167.2 144 61.8
C08p27410 Brassica napus HOM05D003599 ORTHO05D004221 1.2e-39 166.8 135 66.7
Sed0009971 Sechium edule HOM05D003599 ORTHO05D004221 1.2e-39 166.8 137 65.0
unitig_0.g1376 Utricularia gibba HOM05D003599 ORTHO05D004221 1.2e-39 166.8 123 72.4
BcaC02g09276 Brassica carinata HOM05D003599 ORTHO05D004221 1.6e-39 166.4 136 66.9
A04p07220 Brassica napus HOM05D003599 ORTHO05D004221 1.6e-39 166.4 135 65.9
C04p40780 Brassica napus HOM05D003599 ORTHO05D004221 1.6e-39 166.4 136 66.9
Cpa.g.sc945.1 Carica papaya HOM05D003599 ORTHO05D004221 1.6e-39 166.4 128 66.4
Migut.N01485 Erythranthe guttata HOM05D003599 ORTHO05D004221 1.6e-39 166.4 134 65.7
PSO384G0358 Papaver somniferum HOM05D003599 ORTHO05D004221 2.1e-39 166.0 137 65.7
CAN.G1393.20 Capsicum annuum HOM05D003599 ORTHO05D004221 3.6e-39 165.2 150 61.3
Ah.10g024830 Amaranthus hybridus HOM05D003599 ORTHO05D004221 4.7e-39 164.9 137 66.4
Gohir.A08G146100 Gossypium hirsutum HOM05D003599 ORTHO05D004221 6.1e-39 164.5 113 73.5
AUR62009368 Chenopodium quinoa HOM05D003599 ORTHO05D004221 7.9e-39 164.1 143 60.8
Nn7g36074 Nelumbo nucifera HOM05D003599 ORTHO05D004221 1.8e-38 162.9 139 61.2
SalBow4G2031 Salvia bowleyana HOM05D003599 ORTHO05D004221 1.8e-38 162.9 135 64.4
AUR62023049 Chenopodium quinoa HOM05D003599 ORTHO05D004221 2.3e-38 162.5 147 59.9
unitig_61.g26447 Utricularia gibba HOM05D003599 ORTHO05D004221 2.3e-38 162.5 143 62.9
Sabra16G0166600 Salix brachista HOM05D003599 ORTHO05D004221 3.0e-38 162.2 158 59.5
MBI01_g25789_MAGBIO Magnolia biondii HOM05D003599 ORTHO05D004221 8.8e-38 160.6 144 62.5
Os02g0717400 Oryza sativa ssp. japonica HOM05D003599 ORTHO05D004221 1.1e-37 160.2 140 59.3
BolC4t25662H Brassica oleracea HOM05D003599 ORTHO05D004221 5.7e-37 157.9 147 61.9
SHI28919 Sapria himalayana HOM05D003599 ORTHO05D004221 5.7e-37 157.9 142 57.0
SGA_v2.0_scaffold5G03126 Striga asiatica HOM05D003599 ORTHO05D004221 5.7e-37 157.9 140 60.0
BolC8t50358H Brassica oleracea HOM05D003599 ORTHO05D004221 7.4e-37 157.5 148 60.8
BraA04t16417Z Brassica rapa HOM05D003599 ORTHO05D004221 9.7e-37 157.1 148 60.1
Zm00001eb189030 Zea mays HOM05D003599 ORTHO05D004221 1.3e-36 156.8 117 66.7
Peaxi162Scf00058g00215 Petunia axillaris HOM05D003599 ORTHO05D004221 2.2e-36 156.0 155 58.1
Zm00001eb252790 Zea mays HOM05D003599 ORTHO05D004221 2.2e-36 156.0 119 66.4
EL10Ac2g04309 Beta vulgaris HOM05D003599 ORTHO05D004221 3.7e-36 155.2 162 53.1
Psat1g032800 Pisum sativum HOM05D003599 ORTHO05D004221 6.3e-36 154.5 141 60.3
Actinidia31045 Actinidia chinensis HOM05D003599 ORTHO05D004221 2.4e-35 152.5 104 76.0
ATR0605G051 Amborella trichopoda HOM05D003599 ORTHO05D004221 2.0e-34 149.4 135 58.5
SEGI_10833 Sequoiadendron giganteum HOM05D003599 ORTHO05D004221 2.0e-34 149.4 87 80.5
Medtr0321s0030 Medicago truncatula HOM05D003599 ORTHO05D004221 3.5e-34 148.7 114 70.2
Mapoly0060s0041 Marchantia polymorpha HOM05D003599 ORTHO05D004221 6.1e-31 137.9 157 51.6
Pp3c16_5830 Physcomitrium patens HOM05D003599 ORTHO05D004221 8.0e-31 137.5 136 57.4
SMO141G0154 Selaginella moellendorffii HOM05D003599 ORTHO05D004221 1.5e-29 133.3 151 50.3
CBR_g110 Chara braunii HOM05D003599 ORTHO05D004221 1.8e-27 126.3 148 52.0
Pp3c5_14160 Physcomitrium patens HOM05D003599 ORTHO05D004221 2.4e-27 125.9 82 72.0
CDE05G2577 Ceratophyllum demersum HOM05D003599 ORTHO05D004221 4.5e-26 121.7 66 83.3
Nn6g34660 Nelumbo nucifera HOM05D003599 ORTHO05D004221 3.6e-23 112.1 66 75.8
Actinidia32321 Actinidia chinensis HOM05D003599 ORTHO05D004221 9.5e-16 87.4 63 73.0
HPP92_003005 Vanilla planifolia HOM05D003599 ORTHO05D004221 1.8e-14 83.2 47 76.6
Cfa022140 Carpinus fangiana HOM05D003599 ORTHO05D004221 1.2e-13 80.5 77 44.2
SGA_v2.0_scaffold66G22383 Striga asiatica HOM05D000969 ORTHO05D004221 4.9e-12 75.1 47 66.0
SGA_v2.0_scaffold66G22257 Striga asiatica HOM05D003599 ORTHO05D004221 1.8e-11 73.2 48 66.7


User provided reference genes

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