Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 1.4e-73 279.6 153 100.0
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 2.3e-68 262.3 145 99.3
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 5.3e-65 251.1 149 91.9
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 3.1e-57 225.3 149 83.2
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 4.5e-56 221.5 149 81.2
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 9.1e-49 197.2 139 78.4
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 2.0e-48 196.1 154 76.6
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 2.9e-47 192.2 146 76.7
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 4.2e-46 188.3 151 70.2
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 1.2e-43 180.3 149 71.8
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 7.0e-41 171.0 138 71.7
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 7.0e-41 171.0 138 71.7
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 1.0e-36 157.1 154 60.4
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 5.7e-35 151.4 148 62.2
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 1.3e-34 150.2 149 61.7
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 1.3e-34 150.2 154 58.4
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 2.9e-34 149.1 157 54.1
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 2.9e-34 149.1 157 54.1
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 6.4e-34 147.9 145 58.6
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.1e-33 147.1 140 60.0
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 1.4e-33 146.7 140 60.0
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 1.8e-33 146.4 136 59.6
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 2.4e-33 146.0 140 61.4
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 3.2e-33 145.6 151 57.6
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 3.2e-33 145.6 151 57.6
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.6e-32 143.3 146 59.6
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 3.5e-32 142.1 151 58.3
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 4.6e-32 141.7 143 58.7
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.9e-32 141.4 140 58.6
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 7.8e-32 141.0 151 57.6
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.3e-31 140.2 132 59.8
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 1.1e-30 137.1 150 55.3
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 1.5e-30 136.7 154 54.5
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 1.9e-30 136.3 139 54.7
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 2.5e-30 136.0 151 57.0
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 4.3e-30 135.2 147 53.7
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 5.6e-30 134.8 154 52.6
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 9.5e-30 134.0 146 56.2
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 2.8e-29 132.5 156 54.5
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 2.8e-29 132.5 141 56.0
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 4.7e-29 131.7 142 52.8
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.4e-28 130.2 168 49.4
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 3.1e-28 129.0 139 56.8
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.8e-28 127.9 172 47.7
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 2.6e-27 125.9 154 49.4
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 4.4e-27 125.2 147 49.7
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 4.4e-27 125.2 153 51.6
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 1.9e-25 119.8 150 52.0
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 2.4e-25 119.4 141 50.4
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 5.4e-25 118.2 147 53.1
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 5.0e-23 111.7 165 48.5
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 6.6e-23 111.3 156 48.1
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 6.2e-21 104.8 137 45.3
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 1.1e-20 104.0 158 44.9
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 2.3e-20 102.8 144 47.2
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 5.2e-20 101.7 136 49.3
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 6.8e-20 101.3 120 50.8
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 8.9e-20 100.9 144 45.8
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 1.5e-19 100.1 151 47.7
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 2.6e-19 99.4 130 48.5
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 3.4e-19 99.0 139 46.8
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 4.4e-19 98.6 146 47.9
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 5.8e-19 98.2 157 44.6
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 7.5e-19 97.8 147 45.6
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 9.8e-19 97.4 155 44.5
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 1.3e-18 97.1 135 45.9
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 2.9e-18 95.9 138 45.7
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 8.3e-18 94.4 143 45.5
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 8.3e-18 94.4 133 45.9
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 4.1e-17 92.0 139 47.5
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 5.4e-17 91.7 146 45.9
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 7.1e-17 91.3 140 45.0
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 2.7e-16 89.4 130 42.3
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 3.5e-16 89.0 125 42.4
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 3.5e-16 89.0 139 43.2
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 3.5e-16 89.0 139 43.2
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 7.8e-16 87.8 132 43.2
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 3.0e-15 85.9 101 47.5
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 6.6e-15 84.7 137 40.9
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.5e-14 83.6 151 43.0
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 1.9e-14 83.2 124 44.4
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 4.3e-14 82.0 143 42.0
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 5.6e-14 81.6 122 45.1
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 5.6e-14 81.6 122 45.1
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 7.3e-14 81.3 114 43.9
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 9.5e-14 80.9 142 38.7
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 9.5e-14 80.9 143 39.2
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 1.2e-13 80.5 142 43.7
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 1.6e-13 80.1 140 44.3
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 2.1e-13 79.7 142 43.7
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 2.8e-13 79.3 134 42.5
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 6.2e-13 78.2 142 43.0
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 1.1e-12 77.4 140 42.1
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 4.0e-12 75.5 147 40.1
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 8.9e-12 74.3 115 42.6
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 9.9e-11 70.9 113 43.4
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 1.7e-10 70.1 149 40.3
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 1.4e-09 67.0 130 40.8
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.4e-09 66.2 89 42.7
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 7.1e-09 64.7 131 41.2
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 7.1e-09 64.7 148 41.2
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 1.2e-08 63.9 79 44.3
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 1.2e-08 63.9 79 43.0
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 6.0e-08 61.6 120 40.0
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 7.8e-08 61.2 125 39.2
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 1.0e-07 60.8 145 37.2
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 6.6e-07 58.2 109 37.6
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.9e-06 56.6 63 49.2
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 3.3e-06 55.8 126 33.3
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 3.3e-06 55.8 82 45.1
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 4.3e-06 55.5 117 34.2
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 5.6e-06 55.1 108 37.0
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 5.6e-06 55.1 104 36.5


User provided reference genes

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