Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G195200 Glycine max HOM05D007067 ORTHO05D008864 1.7e-102 375.9 184 100.0
Glyma.04G167400 Glycine max HOM05D007067 ORTHO05D008864 6.3e-97 357.5 184 94.6
Phvul.009G186200 Phaseolus vulgaris HOM05D007067 ORTHO05D008864 4.7e-84 314.7 182 83.5
Ca_27682_v3 Cicer arietinum L. HOM05D007067 ORTHO05D008864 1.1e-80 303.5 182 83.0
Lj1g0007284 Lotus japonicus HOM05D007067 ORTHO05D008864 1.4e-80 303.1 182 81.3
TPR.G11876 Trifolium pratense HOM05D007067 ORTHO05D008864 8.6e-78 293.9 182 79.7
arahy.Tifrunner.gnm1.ann1.JMB3VF Arachis hypogaea HOM05D007067 ORTHO05D008864 1.4e-75 286.6 182 77.5
Psat5g201280 Pisum sativum HOM05D007067 ORTHO05D008864 2.3e-75 285.8 182 78.0
Medtr3g435320 Medicago truncatula HOM05D007067 ORTHO05D008864 2.6e-74 282.3 182 78.0
arahy.Tifrunner.gnm1.ann1.V8ZK3N Arachis hypogaea HOM05D007067 ORTHO05D008864 4.4e-74 281.6 182 76.9
Lalb_Chr08g0235641 Lupinus albus HOM05D007067 ORTHO05D008864 2.9e-73 278.9 188 76.6
QL10p017305 Quercus lobata HOM05D007067 ORTHO05D008864 2.4e-64 249.2 182 67.6
Prupe.5G195500 Prunus persica HOM05D007067 ORTHO05D008864 3.2e-64 248.8 185 66.5
MD14G1202700 Malus domestica HOM05D007067 ORTHO05D008864 6.6e-62 241.1 183 66.7
MD06G1195600 Malus domestica HOM05D007067 ORTHO05D008864 2.5e-61 239.2 183 66.1
Cfa018925 Carpinus fangiana HOM05D007067 ORTHO05D008864 7.3e-61 237.7 182 66.5
Actinidia04879 Actinidia chinensis HOM05D007067 ORTHO05D008864 2.1e-60 236.1 182 61.5
GSVIVG01004672001 Vitis vinifera HOM05D007067 ORTHO05D008864 2.1e-60 236.1 182 63.2
GSVIVG01005334001 Vitis vinifera HOM05D007067 ORTHO05D008864 2.1e-60 236.1 182 63.2
CiPaw.11G046200 Carya illinoinensis HOM05D007067 ORTHO05D008864 3.6e-60 235.3 182 63.7
FAN13G0188 Fragaria x ananassa HOM05D007067 ORTHO05D008864 3.6e-60 235.3 185 64.3
FAN18G1220 Fragaria x ananassa HOM05D007067 ORTHO05D008864 3.6e-60 235.3 185 64.3
RcHm_v2.0_Chr7g0181701 Rosa chinensis HOM05D007067 ORTHO05D008864 6.2e-60 234.6 185 63.8
FAN08G0270 Fragaria x ananassa HOM05D007067 ORTHO05D008864 1.4e-59 233.4 185 63.8
CSS0040643 Camellia sinensis var. sinensis HOM05D007067 ORTHO05D008864 4.0e-59 231.9 182 63.2
TWI60G1483 Tripterygium wilfordii HOM05D007067 ORTHO05D008864 6.9e-59 231.1 182 64.8
TAR622G0622 Trochodendron aralioides HOM05D007067 ORTHO05D008864 5.8e-58 228.0 183 63.4
Cc04_g16320 Coffea canephora HOM05D007067 ORTHO05D008864 3.8e-57 225.3 182 60.4
Rhsim08G0153200 Rhododendron simsii HOM05D007067 ORTHO05D008864 4.9e-57 224.9 182 62.6
Manes.06G091000 Manihot esculenta HOM05D007067 ORTHO05D008864 1.4e-56 223.4 183 62.3
Potri.012G068500 Populus trichocarpa HOM05D007067 ORTHO05D008864 2.4e-56 222.6 182 63.2
vmacro17532 Vaccinium macrocarpon HOM05D007067 ORTHO05D008864 2.4e-56 222.6 182 61.5
MBI02_g12272_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 4.2e-56 221.9 185 61.6
Nn3g17293 Nelumbo nucifera HOM05D007067 ORTHO05D008864 7.1e-56 221.1 182 60.4
DCAR_016569 Daucus carota HOM05D007067 ORTHO05D008864 2.1e-55 219.5 184 61.4
Nitab4.5_0005226g0040 Nicotiana tabacum HOM05D007067 ORTHO05D008864 2.7e-55 219.2 183 63.4
Nitab4.5_0003381g0030 Nicotiana tabacum HOM05D007067 ORTHO05D008864 3.5e-55 218.8 182 62.6
Duzib205G1209 Durio zibethinus HOM05D007067 ORTHO05D008864 6.0e-55 218.0 188 61.2
SalBow3G2729 Salvia bowleyana HOM05D007067 ORTHO05D008864 6.0e-55 218.0 182 62.1
MSTRG.9621 Avicennia marina HOM05D007067 ORTHO05D008864 1.7e-54 216.5 182 58.8
MELO3C017182.2 Cucumis melo HOM05D007067 ORTHO05D008864 2.3e-54 216.1 182 61.5
CDE02G3919 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 3.9e-54 215.3 184 59.8
CsaV3_1G002440 Cucumis sativus L. HOM05D007067 ORTHO05D008864 3.9e-54 215.3 182 61.5
Sabra12G0047100 Salix brachista HOM05D007067 ORTHO05D008864 6.6e-54 214.5 182 61.0
PSO063G5395 Papaver somniferum HOM05D007067 ORTHO05D008864 1.1e-53 213.8 190 61.1
CANSAT56G4102 Cannabis sativa HOM05D007067 ORTHO05D008864 1.5e-53 213.4 185 61.1
PSO832G0421 Papaver somniferum HOM05D007067 ORTHO05D008864 1.5e-53 213.4 190 61.1
Thecc.03G091100 Theobroma cacao HOM05D007067 ORTHO05D008864 2.5e-53 212.6 186 59.1
Eucgr.K02487 Eucalyptus grandis HOM05D007067 ORTHO05D008864 4.3e-53 211.8 182 57.7
CAN.G846.12 Capsicum annuum HOM05D007067 ORTHO05D008864 7.3e-53 211.1 182 59.9
ClCG06G016120 Citrullus lanatus HOM05D007067 ORTHO05D008864 7.3e-53 211.1 182 59.9
Sed0012968 Sechium edule HOM05D007067 ORTHO05D008864 1.6e-52 209.9 182 59.9
EL10Ac5g11044 Beta vulgaris HOM05D007067 ORTHO05D008864 2.8e-52 209.1 183 60.1
Cpa.g.sc111.20 Carica papaya HOM05D007067 ORTHO05D008864 4.8e-52 208.4 182 56.6
Hma1.2p1_0637F.1_g193620 Hydrangea macrophylla HOM05D007067 ORTHO05D008864 8.1e-52 207.6 127 77.2
Gorai.003G097800 Gossypium raimondii HOM05D007067 ORTHO05D008864 2.4e-51 206.1 182 58.8
Gohir.D03G093800 Gossypium hirsutum HOM05D007067 ORTHO05D008864 9.0e-51 204.1 182 58.8
Gohir.A03G067300 Gossypium hirsutum HOM05D007067 ORTHO05D008864 1.2e-50 203.8 182 58.2
Lj5A109T72 Lonicera japonica HOM05D007067 ORTHO05D008864 2.6e-50 202.6 148 67.6
Solyc12g036170.2 Solanum lycopersicum HOM05D007067 ORTHO05D008864 2.6e-50 202.6 155 65.2
Atru.chr9.195 Acer truncatum HOM05D007067 ORTHO05D008864 5.8e-50 201.4 187 62.0
Aqoxy3G00483 Aquilegia oxysepala HOM05D007067 ORTHO05D008864 5.8e-50 201.4 183 59.0
CDE09G1053 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 5.8e-50 201.4 159 64.8
Peaxi162Scf00106g00326 Petunia axillaris HOM05D007067 ORTHO05D008864 7.6e-50 201.1 165 61.2
Sopen12g016290 Solanum pennellii HOM05D007067 ORTHO05D008864 9.9e-50 200.7 147 66.7
PGSC0003DMG400021933 Solanum tuberosum HOM05D007067 ORTHO05D008864 1.3e-49 200.3 180 58.9
AUR62008437 Chenopodium quinoa HOM05D007067 ORTHO05D008864 8.4e-49 197.6 126 73.0
THA.LOC104808257 Tarenaya hassleriana HOM05D007067 ORTHO05D008864 4.2e-48 195.3 187 58.3
Migut.D01803 Erythranthe guttata HOM05D007067 ORTHO05D008864 7.1e-48 194.5 184 56.0
Sp1g16740 Schrenkiella parvula HOM05D007067 ORTHO05D008864 3.5e-47 192.2 188 57.4
unitig_0.g778 Utricularia gibba HOM05D007067 ORTHO05D008864 4.6e-47 191.8 186 56.5
AT1G18730 Arabidopsis thaliana HOM05D007067 ORTHO05D008864 6.0e-47 191.4 189 57.7
C08p43060 Brassica napus HOM05D007067 ORTHO05D008864 6.0e-47 191.4 161 62.7
ECA246G0430 Erigeron canadensis HOM05D007067 ORTHO05D008864 1.0e-46 190.7 185 54.1
AL1G31200 Arabidopsis lyrata HOM05D007067 ORTHO05D008864 1.8e-46 189.9 186 58.1
HanXRQChr05g0156061 Helianthus annuus HOM05D007067 ORTHO05D008864 1.8e-46 189.9 180 54.4
BcaB07g31890 Brassica carinata HOM05D007067 ORTHO05D008864 2.3e-46 189.5 187 56.7
A09p59720 Brassica napus HOM05D007067 ORTHO05D008864 6.7e-46 188.0 158 62.0
BraA09t41348Z Brassica rapa HOM05D007067 ORTHO05D008864 6.7e-46 188.0 158 62.0
Carub.0001s1838 Capsella rubella HOM05D007067 ORTHO05D008864 6.7e-46 188.0 186 57.0
Dinv38731 Davidia involucrata HOM05D007067 ORTHO05D008864 8.7e-46 187.6 182 53.8
Thhalv10008902m.g Eutrema salsugineum HOM05D007067 ORTHO05D008864 1.5e-45 186.8 131 70.2
BcaC05g25773 Brassica carinata HOM05D007067 ORTHO05D008864 1.9e-45 186.4 131 70.2
C05p17040 Brassica napus HOM05D007067 ORTHO05D008864 2.5e-45 186.0 189 57.1
BolC5t30410H Brassica oleracea HOM05D007067 ORTHO05D008864 2.5e-45 186.0 189 57.1
BcaB03g14481 Brassica carinata HOM05D007067 ORTHO05D008864 3.3e-45 185.7 160 62.5
A06p14840 Brassica napus HOM05D007067 ORTHO05D008864 3.3e-45 185.7 127 71.7
BraA06t24606Z Brassica rapa HOM05D007067 ORTHO05D008864 3.3e-45 185.7 127 71.7
CARHR019370 Cardamine hirsuta HOM05D007067 ORTHO05D008864 4.3e-45 185.3 131 69.5
Eucgr.K02485 Eucalyptus grandis HOM05D007067 ORTHO05D008864 7.4e-45 184.5 169 53.8
PGR044G1431 Punica granatum HOM05D007067 ORTHO05D008864 9.6e-45 184.1 151 62.3
ATR0564G121 Amborella trichopoda HOM05D007067 ORTHO05D008864 4.8e-44 181.8 187 52.4
BolC8t51861H Brassica oleracea HOM05D007067 ORTHO05D008864 4.8e-44 181.8 133 69.2
Lsat_1_v5_gn_5_20880 Lactuca sativa HOM05D007067 ORTHO05D008864 1.8e-43 179.9 118 71.2
Peaxi162Scf00106g00037 Petunia axillaris HOM05D007067 ORTHO05D008864 4.5e-42 175.3 111 74.8
MBI02_g23462_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 1.4e-40 170.2 183 53.6
Aa31LG7G3520 Aethionema arabicum HOM05D007067 ORTHO05D008864 5.5e-40 168.3 117 65.0
AUR62021654 Chenopodium quinoa HOM05D007067 ORTHO05D008864 1.3e-36 157.1 149 55.0
Zm00001eb254450 Zea mays HOM05D007067 ORTHO05D008864 3.1e-35 152.5 134 56.7
COL.COLO4_28333 Corchorus olitorius HOM05D007067 ORTHO05D008864 1.5e-34 150.2 186 48.4
Os02g0744000 Oryza sativa ssp. japonica HOM05D007067 ORTHO05D008864 1.0e-33 147.5 132 57.6
BcaC07g41296 Brassica carinata HOM05D007067 ORTHO05D008864 2.2e-33 146.4 96 69.8
FvH4_5g14690 Fragaria vesca HOM05D007067 ORTHO05D008864 1.6e-31 140.2 124 56.5
SEGI_39094 Sequoiadendron giganteum HOM05D007067 ORTHO05D008864 5.7e-29 131.7 164 43.9
Ciclev10022880m.g Citrus clementina HOM05D007067 ORTHO05D008864 9.7e-29 131.0 116 56.9
Rhsim08G0153500 Rhododendron simsii HOM05D007067 ORTHO05D008864 6.9e-27 124.8 180 42.8
CBR_g30507 Chara braunii HOM05D007067 ORTHO05D008864 1.8e-22 110.2 94 57.4
Mapoly0149s0008 Marchantia polymorpha HOM05D007067 ORTHO05D008864 2.0e-18 96.7 100 44.0
Pp3c16_3930 Physcomitrium patens HOM05D007067 ORTHO05D008864 6.5e-17 91.7 88 50.0
Manes.06G090801 Manihot esculenta HOM05D007067 ORTHO05D008864 7.9e-15 84.7 113 46.0
Haze_07309 Corylus avellana HOM05D007067 ORTHO05D008864 1.5e-13 80.5 182 35.7
Ah.11g048310 Amaranthus hybridus HOM05D007067 ORTHO05D008864 4.8e-12 75.5 105 43.8
Rhsim08G0168600 Rhododendron simsii HOM05D000306 ORTHO05D023263 3.0e-06 56.2 37 81.1


User provided reference genes

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