Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 2.5e-83 312.4 195 100.0
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 1.7e-76 289.7 195 92.3
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 2.9e-68 262.3 199 87.4
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 4.9e-63 245.0 200 82.5
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 1.6e-61 240.0 203 80.3
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 3.3e-59 232.3 195 77.4
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 4.4e-56 221.9 195 75.9
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 9.8e-56 220.7 197 76.1
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 1.1e-54 217.2 186 78.5
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 1.9e-54 216.5 195 74.9
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 9.2e-54 214.2 199 75.4
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 1.6e-53 213.4 196 76.0
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 1.0e-52 210.7 200 72.5
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 1.3e-52 210.3 196 74.0
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 1.3e-52 210.3 196 74.0
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 3.0e-52 209.1 196 74.0
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 2.5e-51 206.1 164 81.7
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 5.6e-51 204.9 178 76.4
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 7.3e-51 204.5 202 71.3
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 1.2e-50 203.8 196 70.4
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 2.1e-50 203.0 162 82.1
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 4.7e-50 201.8 162 79.6
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 4.7e-50 201.8 192 72.4
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 1.1e-49 200.7 200 68.5
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 1.1e-49 200.7 192 73.4
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 2.3e-49 199.5 196 70.9
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 3.1e-49 199.1 155 83.2
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 3.1e-49 199.1 193 71.5
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 6.8e-49 198.0 202 68.3
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 8.9e-49 197.6 155 82.6
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 1.5e-48 196.8 171 76.0
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 2.6e-48 196.1 192 70.3
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 4.4e-48 195.3 199 68.8
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 4.4e-48 195.3 196 71.9
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 5.8e-48 194.9 193 69.4
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 7.5e-48 194.5 171 75.4
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 7.5e-48 194.5 171 75.4
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 1.7e-47 193.4 165 76.4
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.9e-47 192.6 181 71.3
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.9e-47 192.6 180 72.2
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 3.7e-47 192.2 196 69.9
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 6.4e-47 191.4 154 82.5
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 8.3e-47 191.0 194 68.6
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 8.3e-47 191.0 197 69.0
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 8.3e-47 191.0 154 80.5
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 1.1e-46 190.7 146 85.6
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 1.4e-46 190.3 149 83.2
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 1.9e-46 189.9 162 75.3
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 2.4e-46 189.5 191 68.6
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 3.2e-46 189.1 164 76.2
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 3.2e-46 189.1 198 66.7
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 3.2e-46 189.1 181 70.7
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 3.2e-46 189.1 174 71.8
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 4.1e-46 188.7 198 67.2
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 5.4e-46 188.3 151 82.1
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 9.2e-46 187.6 181 70.2
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 1.6e-45 186.8 157 79.0
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 2.1e-45 186.4 195 68.2
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 4.6e-45 185.3 198 66.7
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 4.6e-45 185.3 195 66.2
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 4.6e-45 185.3 195 66.2
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 6.0e-45 184.9 167 73.7
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 1.3e-44 183.7 163 74.8
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 1.3e-44 183.7 174 73.0
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 3.0e-44 182.6 194 64.4
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 3.9e-44 182.2 178 69.7
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 5.1e-44 181.8 200 64.0
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 5.1e-44 181.8 168 72.6
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 6.6e-44 181.4 167 73.1
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 2.5e-43 179.5 197 64.0
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 4.3e-43 178.7 200 65.5
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 7.3e-43 177.9 191 66.0
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 1.2e-42 177.2 195 64.6
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 1.6e-42 176.8 195 67.2
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 2.1e-42 176.4 180 67.8
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 2.1e-42 176.4 150 78.7
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 3.6e-42 175.6 186 65.1
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 4.7e-42 175.3 198 64.6
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 4.7e-42 175.3 198 64.6
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 4.7e-42 175.3 180 67.8
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 6.2e-42 174.9 200 64.5
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 6.2e-42 174.9 200 64.5
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 6.2e-42 174.9 158 74.7
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 8.1e-42 174.5 149 79.2
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 1.4e-41 173.7 148 78.4
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 2.4e-41 172.9 200 63.5
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 4.0e-41 172.2 170 68.2
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 4.0e-41 172.2 170 68.8
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 6.8e-41 171.4 195 64.6
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 1.2e-40 170.6 175 67.4
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 2.0e-40 169.9 191 62.8
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 3.4e-40 169.1 199 61.8
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 7.6e-40 167.9 201 62.7
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 7.6e-40 167.9 155 72.9
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 9.9e-40 167.5 198 61.1
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 1.7e-39 166.8 195 65.1
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 1.7e-39 166.8 196 61.2
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 2.9e-39 166.0 157 73.2
Prupe.5G186300 Prunus persica HOM05D006349 ORTHO05D008205 3.8e-39 165.6 161 68.9
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 1.2e-37 160.6 202 61.4
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 7.8e-37 157.9 195 63.6
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 8.6e-36 154.5 196 62.8
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 3.3e-35 152.5 201 58.2
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 1.2e-34 150.6 134 75.4
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 2.0e-32 143.3 191 57.1
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 9.9e-32 141.0 195 53.3
FAN08G2244 Fragaria x ananassa HOM05D006349 ORTHO05D008205 4.9e-31 138.7 180 59.4
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 5.6e-27 125.2 162 58.6
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 2.8e-26 122.9 162 56.8
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 1.7e-23 113.6 104 60.6
Mapoly0105s0011 Marchantia polymorpha HOM05D006349 ORTHO05D008205 2.4e-22 109.8 177 51.4
AagrBONN_evm.TU.Sc2ySwM_362.857 Anthoceros agrestis HOM05D006349 ORTHO05D008205 1.2e-21 107.5 171 52.0
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 3.0e-20 102.8 150 54.7
SGA_v2.0_scaffold294G47475 Striga asiatica HOM05D006349 ORTHO05D008205 2.5e-19 99.8 127 52.8
Pp3c25_12400 Physcomitrium patens HOM05D006349 ORTHO05D008205 2.8e-18 96.3 122 63.1
A02p19550 Brassica napus HOM05D006349 ORTHO05D008205 9.0e-17 91.3 97 53.6
CARHR103880 Cardamine hirsuta HOM05D006349 ORTHO05D008205 1.5e-16 90.5 140 55.7
CBR_g48703 Chara braunii HOM05D006349 ORTHO05D008205 4.5e-16 89.0 156 48.7
BcaC03g15526 Brassica carinata HOM05D006349 ORTHO05D008205 8.4e-15 84.7 110 55.5
Nn8g40820 Nelumbo nucifera HOM05D006349 ORTHO05D008205 2.4e-14 83.2 118 51.7
Pp3c24_420 Physcomitrium patens HOM05D006349 ORTHO05D008205 9.0e-09 64.7 162 44.4


User provided reference genes

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