Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 1.2e-129 466.5 228 100.0
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 1.0e-104 383.6 230 83.9
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 4.5e-100 368.2 219 83.6
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 7.1e-98 360.9 219 81.7
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 1.7e-91 339.7 221 76.5
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 1.2e-89 333.6 234 76.5
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 1.3e-88 330.1 223 75.8
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 3.3e-87 325.5 233 74.2
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 1.1e-85 320.5 222 73.9
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 2.4e-85 319.3 224 71.0
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 4.0e-85 318.5 220 75.0
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 1.8e-80 303.1 229 68.1
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 3.0e-80 302.4 205 72.7
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 3.7e-78 295.4 225 66.2
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 6.3e-78 294.7 231 65.8
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 3.1e-77 292.4 229 63.8
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 1.0e-75 287.3 229 65.5
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 1.7e-75 286.6 223 65.5
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 1.7e-75 286.6 221 66.5
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 2.2e-75 286.2 231 64.9
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 2.2e-75 286.2 227 66.5
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 3.8e-75 285.4 223 70.9
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 6.5e-75 284.6 231 62.3
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 6.5e-75 284.6 226 64.6
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 5.5e-74 281.6 228 64.0
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 3.6e-73 278.9 228 63.6
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 3.6e-73 278.9 234 62.0
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 4.6e-73 278.5 167 79.0
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 6.1e-73 278.1 225 65.3
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 6.1e-73 278.1 228 63.6
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 7.9e-73 277.7 205 66.8
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 1.0e-72 277.3 235 63.4
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 1.4e-72 276.9 237 62.4
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 1.8e-72 276.6 204 70.1
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 2.3e-72 276.2 203 68.0
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 3.0e-72 275.8 226 63.7
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 3.0e-72 275.8 227 64.8
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 5.1e-72 275.0 167 77.8
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 5.1e-72 275.0 194 72.2
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 1.5e-71 273.5 215 64.2
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 2.5e-71 272.7 222 62.6
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 3.3e-71 272.3 225 63.6
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 3.3e-71 272.3 216 62.0
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 4.3e-71 271.9 223 65.0
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 5.7e-71 271.6 229 61.6
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 9.7e-71 270.8 233 63.1
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 1.7e-70 270.0 164 78.7
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 2.2e-70 269.6 210 64.3
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 3.7e-70 268.9 171 73.7
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 3.7e-70 268.9 226 60.2
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 4.8e-70 268.5 209 65.6
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 1.1e-69 267.3 171 72.5
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 1.4e-69 266.9 157 77.7
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 1.4e-69 266.9 192 63.5
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 9.1e-69 264.2 192 67.7
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 2.0e-68 263.1 193 63.7
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 3.4e-68 262.3 228 62.3
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 7.7e-68 261.2 241 57.7
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 7.7e-68 261.2 169 71.6
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 2.2e-67 259.6 154 76.6
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 3.8e-67 258.8 164 73.8
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 3.8e-67 258.8 202 65.3
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 3.8e-67 258.8 232 60.3
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 5.0e-67 258.5 211 67.8
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 6.5e-67 258.1 190 66.8
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 8.5e-67 257.7 190 67.4
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 8.5e-67 257.7 190 67.4
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 3.2e-66 255.8 169 70.4
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 4.2e-66 255.4 229 61.6
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 4.2e-66 255.4 205 63.4
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 4.2e-66 255.4 223 59.2
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 9.4e-66 254.2 167 70.7
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 9.4e-66 254.2 179 69.8
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 1.2e-65 253.8 158 74.1
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 1.6e-65 253.4 215 59.5
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 2.7e-65 252.7 211 62.6
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 3.6e-65 252.3 177 65.5
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 4.7e-65 251.9 218 60.6
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 1.8e-64 250.0 164 72.6
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 3.9e-64 248.8 224 58.9
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 8.8e-64 247.7 242 55.4
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 1.1e-63 247.3 225 58.7
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 1.5e-63 246.9 222 59.0
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 2.6e-63 246.1 222 59.0
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 2.6e-63 246.1 222 59.0
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 4.4e-63 245.4 176 69.9
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 7.4e-63 244.6 206 61.7
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 1.3e-62 243.8 201 63.7
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 4.8e-62 241.9 191 62.8
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 7.0e-61 238.0 177 64.4
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 2.0e-60 236.5 209 59.3
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 3.5e-60 235.7 209 59.3
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 3.5e-60 235.7 193 64.2
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 7.7e-60 234.6 154 72.1
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 2.2e-59 233.0 125 86.4
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 5.0e-59 231.9 231 55.0
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 9.4e-58 227.6 145 73.8
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 4.7e-57 225.3 162 63.6
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 1.0e-56 224.2 156 66.7
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 1.0e-56 224.2 152 68.4
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 4.1e-53 212.2 164 64.0
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 7.0e-53 211.5 139 74.8
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 5.9e-52 208.4 172 58.1
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 3.2e-50 202.6 162 66.0
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 3.0e-48 196.1 152 55.3
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 5.4e-45 185.3 119 73.9
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 7.2e-42 174.9 111 67.6
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 2.1e-41 173.3 231 47.6
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 1.2e-36 157.5 93 77.4
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 3.8e-35 152.5 93 78.5
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 3.3e-34 149.4 150 56.7
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 3.3e-34 149.4 150 56.7
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 1.4e-32 144.1 131 49.6
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 5.2e-32 142.1 136 47.1
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 3.4e-31 139.4 135 55.6
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 3.4e-31 139.4 82 78.0
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 1.3e-30 137.5 128 45.3
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 9.2e-29 131.3 130 53.1
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 2.9e-27 126.3 148 51.4
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 5.6e-26 122.1 111 57.7
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 1.5e-23 114.0 92 60.9
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 1.2e-17 94.4 113 35.4
TPR.G22672 Trifolium pratense HOM05D006272 ORTHO05D007989 3.3e-10 69.7 38 78.9
PRCOL_00004884 Prasinoderma coloniale HOM05D006272 ORTHO05D030206 6.2e-09 65.5 164 27.4
vmacro22872 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 4.9e-06 55.8 36 66.7


User provided reference genes

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