Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 1.8e-47 192.2 96 100.0
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 1.2e-43 179.5 96 93.8
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 5.6e-36 154.1 93 82.8
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 7.3e-36 153.7 94 80.9
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 2.0e-33 145.6 94 73.4
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 5.8e-33 144.1 94 74.5
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 9.8e-33 143.3 94 73.4
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 1.7e-32 142.5 94 71.3
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 2.9e-32 141.7 95 74.7
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 1.9e-31 139.0 94 72.3
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 3.2e-31 138.3 96 69.8
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 3.2e-31 138.3 95 71.6
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 5.4e-31 137.5 94 70.2
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 1.2e-30 136.3 94 69.1
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.7e-30 135.2 94 71.3
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 1.7e-29 132.5 94 67.0
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.7e-29 132.5 94 68.1
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.7e-29 132.5 94 68.1
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 5.0e-29 131.0 94 66.0
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 6.6e-29 130.6 94 68.1
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 8.6e-29 130.2 93 69.9
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 1.5e-28 129.4 93 68.8
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 1.9e-28 129.0 94 66.0
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 2.5e-28 128.6 94 66.0
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 4.3e-28 127.9 93 69.9
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 4.3e-28 127.9 101 64.4
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 5.6e-28 127.5 94 64.9
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 2.1e-27 125.6 93 65.6
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 3.6e-27 124.8 96 65.6
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 1.1e-26 123.2 94 61.7
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 1.4e-26 122.9 94 64.9
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.8e-26 122.5 94 60.6
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 2.3e-26 122.1 94 69.1
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 3.1e-26 121.7 94 59.6
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 4.0e-26 121.3 92 63.0
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 4.0e-26 121.3 94 62.8
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 6.8e-26 120.6 89 61.8
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 8.9e-26 120.2 94 63.8
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 8.9e-26 120.2 94 63.8
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 8.9e-26 120.2 94 64.9
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 8.9e-26 120.2 95 62.1
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 1.2e-25 119.8 93 63.4
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 1.5e-25 119.4 93 62.4
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.5e-25 119.4 94 62.8
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 2.0e-25 119.0 93 65.6
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 2.6e-25 118.6 93 66.7
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 3.4e-25 118.2 91 63.7
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 3.4e-25 118.2 96 64.6
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 5.8e-25 117.5 94 62.8
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 5.8e-25 117.5 95 62.1
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 7.5e-25 117.1 93 67.7
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 7.5e-25 117.1 94 62.8
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 7.5e-25 117.1 94 60.6
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 9.8e-25 116.7 94 62.8
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 1.3e-24 116.3 93 64.5
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 1.7e-24 115.9 95 63.2
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 2.9e-24 115.2 95 61.1
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 2.9e-24 115.2 95 61.1
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 2.9e-24 115.2 95 62.1
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 3.7e-24 114.8 94 61.7
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 6.4e-24 114.0 94 61.7
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 6.4e-24 114.0 92 65.2
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 6.4e-24 114.0 93 62.4
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 6.4e-24 114.0 94 57.4
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 1.1e-23 113.2 93 62.4
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 1.1e-23 113.2 93 60.2
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.1e-23 113.2 93 61.3
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.4e-23 112.8 94 60.6
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 1.4e-23 112.8 91 62.6
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 1.4e-23 112.8 94 60.6
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 1.9e-23 112.5 94 59.6
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 3.2e-23 111.7 96 60.4
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 3.2e-23 111.7 94 58.5
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 3.2e-23 111.7 94 63.8
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 3.2e-23 111.7 95 57.9
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 3.2e-23 111.7 94 59.6
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 3.2e-23 111.7 94 59.6
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 3.2e-23 111.7 94 59.6
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 4.1e-23 111.3 103 58.3
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 4.1e-23 111.3 95 60.0
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 4.1e-23 111.3 90 64.4
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 4.1e-23 111.3 95 61.1
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 5.4e-23 110.9 94 58.5
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 5.4e-23 110.9 77 72.7
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 7.1e-23 110.5 94 60.6
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 9.2e-23 110.2 94 56.4
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 1.2e-22 109.8 103 56.3
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 1.2e-22 109.8 93 61.3
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 2.1e-22 109.0 94 61.7
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 2.1e-22 109.0 87 65.5
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 2.7e-22 108.6 93 60.2
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 2.7e-22 108.6 93 60.2
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 3.5e-22 108.2 93 61.3
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 3.5e-22 108.2 93 62.4
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 4.6e-22 107.8 93 60.2
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 1.0e-21 106.7 88 60.2
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 1.3e-21 106.3 89 61.8
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 1.3e-21 106.3 93 60.2
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 1.3e-21 106.3 93 60.2
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 2.3e-21 105.5 94 55.3
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 3.0e-21 105.1 91 57.1
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 3.0e-21 105.1 91 57.1
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 3.0e-21 105.1 91 57.1
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 3.9e-21 104.8 92 65.2
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.1e-20 103.2 77 67.5
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.1e-20 103.2 77 67.5
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 2.5e-20 102.1 94 55.3
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 3.3e-20 101.7 93 59.1
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 3.3e-20 101.7 93 59.1
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 3.3e-20 101.7 93 59.1
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 4.3e-20 101.3 89 55.1
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 4.3e-20 101.3 79 62.0
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 4.3e-20 101.3 93 59.1
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 2.1e-19 99.0 97 50.5
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 2.1e-19 99.0 94 56.4
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 2.3e-18 95.5 90 56.7
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 4.0e-18 94.7 87 55.2
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 4.0e-18 94.7 74 60.8
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 5.2e-18 94.4 93 55.9
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 6.8e-18 94.0 78 61.5
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 9.9e-17 90.1 95 48.4
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 1.7e-16 89.4 71 64.8
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 3.7e-16 88.2 76 60.5
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 1.9e-15 85.9 131 42.7
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 3.2e-15 85.1 60 65.0
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 2.1e-14 82.4 76 57.9
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 2.7e-14 82.0 84 47.6
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 1.3e-13 79.7 59 69.5
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 6.6e-13 77.4 81 53.1
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 6.6e-13 77.4 59 67.8
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 1.5e-12 76.3 87 50.6
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 1.9e-12 75.9 91 47.3
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 2.5e-12 75.5 95 46.3
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 4.3e-12 74.7 91 47.3
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 9.6e-12 73.6 89 52.8
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 2.1e-11 72.4 55 63.6
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 3.6e-11 71.6 87 48.3
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 8.9e-10 67.0 66 54.5
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 1.5e-09 66.2 82 42.7
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 5.8e-09 64.3 64 53.1
Cpa.g.c35589.2 Carica papaya HOM05D005070 ORTHO05D005987 2.2e-08 62.4 42 76.2
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 3.8e-08 61.6 52 51.9
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 1.4e-07 59.7 62 51.6
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 5.4e-07 57.8 64 43.8
Ca_10512_v3 Cicer arietinum L. HOM05D005070 ORTHO05D005987 7.1e-07 57.4 35 77.1
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 7.1e-07 57.4 51 56.9


User provided reference genes

Program Settings