Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 4.8e-27 124.0 74 100.0
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 4.0e-26 120.9 74 97.3
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 9.0e-26 119.8 74 93.2
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 5.8e-25 117.1 74 93.2
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 7.6e-25 116.7 74 90.5
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 9.9e-25 116.3 74 91.9
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 2.2e-24 115.2 70 94.3
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 2.9e-24 114.8 74 90.5
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 8.4e-24 113.2 74 87.8
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 8.4e-24 113.2 74 90.5
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 2.4e-23 111.7 72 87.5
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 5.4e-23 110.5 74 87.8
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 7.1e-23 110.2 74 87.8
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 2.7e-22 108.2 75 84.0
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 3.5e-22 107.8 75 84.0
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 3.5e-22 107.8 75 84.0
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 6.0e-22 107.1 74 87.8
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 7.8e-22 106.7 76 82.9
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 1.0e-21 106.3 74 85.1
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 1.0e-21 106.3 72 76.4
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 1.3e-21 105.9 72 77.8
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 1.7e-21 105.5 71 85.9
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 2.3e-21 105.1 74 86.5
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 2.3e-21 105.1 74 86.5
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 2.3e-21 105.1 74 75.7
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 3.0e-21 104.8 71 87.3
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 3.0e-21 104.8 71 87.3
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 3.9e-21 104.4 74 89.2
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 3.9e-21 104.4 74 89.2
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 3.9e-21 104.4 71 85.9
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 3.9e-21 104.4 71 85.9
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 3.9e-21 104.4 71 85.9
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 5.1e-21 104.0 74 85.1
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 6.6e-21 103.6 74 75.7
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 6.6e-21 103.6 74 87.8
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 6.6e-21 103.6 71 84.5
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 8.7e-21 103.2 73 82.2
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 1.1e-20 102.8 73 86.3
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 1.1e-20 102.8 74 87.8
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.1e-20 102.8 74 85.1
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.1e-20 102.8 74 85.1
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 1.1e-20 102.8 74 79.7
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 1.5e-20 102.4 74 81.1
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.5e-20 102.4 74 78.4
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.5e-20 102.4 74 78.4
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 1.9e-20 102.1 74 74.3
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.9e-20 102.1 74 78.4
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 2.5e-20 101.7 74 83.8
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 3.3e-20 101.3 74 83.8
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 3.3e-20 101.3 74 82.4
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 4.3e-20 100.9 73 82.2
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 7.3e-20 100.1 74 73.0
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 7.3e-20 100.1 82 80.5
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 1.3e-19 99.4 74 82.4
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 1.3e-19 99.4 75 80.0
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 1.3e-19 99.4 74 77.0
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 1.6e-19 99.0 76 82.9
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 1.6e-19 99.0 73 75.3
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 2.1e-19 98.6 75 78.7
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 2.1e-19 98.6 74 82.4
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 2.8e-19 98.2 74 82.4
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 2.8e-19 98.2 71 84.5
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 3.6e-19 97.8 75 78.7
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 4.8e-19 97.4 72 84.7
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 4.8e-19 97.4 74 83.8
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 6.2e-19 97.1 74 79.7
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 6.2e-19 97.1 75 81.3
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 8.1e-19 96.7 73 79.5
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.1e-18 96.3 76 75.0
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 1.4e-18 95.9 76 77.6
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.4e-18 95.9 74 73.0
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 2.4e-18 95.1 76 82.9
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 2.4e-18 95.1 75 72.0
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 2.4e-18 95.1 74 82.4
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 3.1e-18 94.7 74 81.1
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 3.1e-18 94.7 74 81.1
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 3.1e-18 94.7 74 81.1
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 3.1e-18 94.7 75 76.0
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 5.3e-18 94.0 75 80.0
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 5.3e-18 94.0 75 80.0
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 6.9e-18 93.6 74 78.4
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 6.9e-18 93.6 74 70.3
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 1.2e-17 92.8 74 67.6
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 1.5e-17 92.4 75 80.0
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 1.5e-17 92.4 70 84.3
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 2.6e-17 91.7 75 76.0
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 2.6e-17 91.7 73 72.6
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 3.4e-17 91.3 73 69.9
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 3.4e-17 91.3 75 78.7
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 3.4e-17 91.3 75 78.7
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 4.5e-17 90.9 74 74.3
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 4.5e-17 90.9 75 66.7
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.8e-17 90.5 72 75.0
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.8e-17 90.5 72 75.0
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.8e-17 90.5 72 75.0
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.8e-17 90.5 72 75.0
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 5.8e-17 90.5 75 80.0
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 2.2e-16 88.6 75 69.3
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 2.9e-16 88.2 72 73.6
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 3.8e-16 87.8 74 70.3
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 3.8e-16 87.8 71 80.3
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 4.9e-16 87.4 74 73.0
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 8.4e-16 86.7 72 72.2
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 8.4e-16 86.7 72 72.2
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 8.4e-16 86.7 74 74.3
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 1.4e-15 85.9 75 76.0
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 4.2e-15 84.3 74 73.0
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 4.2e-15 84.3 74 73.0
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 5.4e-15 84.0 75 76.0
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 7.1e-15 83.6 73 74.0
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 9.3e-15 83.2 70 74.3
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 9.3e-15 83.2 70 74.3
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 9.3e-15 83.2 70 74.3
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 9.3e-15 83.2 70 74.3
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 9.3e-15 83.2 75 76.0
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 1.2e-14 82.8 72 73.6
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 2.1e-14 82.0 74 74.3
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 2.1e-14 82.0 74 77.0
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 2.1e-14 82.0 47 87.2
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 2.7e-14 81.6 74 73.0
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 3.5e-14 81.3 74 75.7
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 4.6e-14 80.9 75 74.7
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 7.9e-14 80.1 75 78.7
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 7.9e-14 80.1 74 66.2
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 1.0e-13 79.7 74 70.3
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.0e-13 79.7 65 78.5
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 1.3e-13 79.3 46 87.0
Duzib068G0952 Durio zibethinus HOM05D003549 ORTHO05D004223 1.3e-13 79.3 81 71.6
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.3e-13 79.3 70 62.9
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 1.3e-13 79.3 73 65.8
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 1.8e-13 79.0 48 81.2
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 6.7e-13 77.0 68 77.9
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 6.7e-13 77.0 72 62.5
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 1.1e-12 76.3 49 81.6
QL10p012114 Quercus lobata HOM05D003549 ORTHO05D004223 2.5e-12 75.1 128 47.7
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 4.3e-12 74.3 74 64.9
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 5.6e-12 73.9 69 59.4
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 7.4e-12 73.6 66 63.6
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 7.4e-12 73.6 72 63.9
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 1.3e-11 72.8 64 78.1
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 1.3e-11 72.8 74 68.9
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 1.6e-11 72.4 74 67.6
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 1.6e-11 72.4 74 70.3
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.6e-11 72.4 75 66.7
Cfa019097 Carpinus fangiana HOM05D003549 ORTHO05D004223 2.8e-11 71.6 125 48.8
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 2.8e-11 71.6 72 69.4
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 3.7e-11 71.2 49 75.5
Hma1.2p1_0967F.1_g242260 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 6.2e-11 70.5 82 53.7
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 1.8e-10 68.9 70 58.6
SMO139G0002 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 2.4e-10 68.6 66 68.2
HPP92_011135 Vanilla planifolia HOM05D003549 ORTHO05D004223 2.4e-10 68.6 110 48.2
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 4.0e-10 67.8 70 70.0
SMO145G0027 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 6.9e-10 67.0 63 69.8
Gohir.D12G274100 Gossypium hirsutum HOM05D003549 ORTHO05D004223 9.0e-10 66.6 72 66.7
Gorai.008G294500 Gossypium raimondii HOM05D003549 ORTHO05D004223 9.0e-10 66.6 72 66.7
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 1.2e-09 66.2 70 68.6
Aqoxy3G02997 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 3.4e-09 64.7 67 65.7
AUR62036487 Chenopodium quinoa HOM05D003549 ORTHO05D004223 1.0e-08 63.2 70 68.6
HanXRQChr02g0037231 Helianthus annuus HOM05D003549 ORTHO05D004223 1.3e-08 62.8 76 61.8
EL10Ac5g10777 Beta vulgaris HOM05D003549 ORTHO05D004223 1.7e-08 62.4 68 67.6
AagrBONN_evm.TU.Sc2ySwM_117.1875 Anthoceros agrestis HOM05D003549 ORTHO05D004223 2.9e-08 61.6 71 53.5
unitig_749.g13471 Utricularia gibba HOM05D003549 ORTHO05D004223 2.9e-08 61.6 76 64.5
AT1G64750 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 3.8e-08 61.2 116 48.3
CBR_g8660 Chara braunii HOM05D003549 ORTHO05D004223 3.8e-08 61.2 71 59.2
Gohir.D07G065000 Gossypium hirsutum HOM05D003549 ORTHO05D004223 4.9e-08 60.8 49 69.4
Gorai.001G068500 Gossypium raimondii HOM05D003549 ORTHO05D004223 4.9e-08 60.8 49 69.4
ATR0752G058 Amborella trichopoda HOM05D003549 ORTHO05D004223 6.5e-08 60.5 72 65.3
CDE10G0156 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 6.5e-08 60.5 71 59.2
Sopen12g011080 Solanum pennellii HOM05D003549 ORTHO05D004223 6.5e-08 60.5 45 73.3
AUR62037088 Chenopodium quinoa HOM05D003549 ORTHO05D004223 8.4e-08 60.1 70 67.1
ECA246G0614 Erigeron canadensis HOM05D001816 ORTHO05D002001 8.4e-08 60.1 41 73.2
BraA02t07390Z Brassica rapa HOM05D003549 ORTHO05D004223 1.1e-07 59.7 86 55.8
Lsat_1_v5_gn_1_26640 Lactuca sativa HOM05D000122 ORTHO05D004223 1.1e-07 59.7 74 59.5
Peaxi162Scf00548g00225 Petunia axillaris HOM05D003549 ORTHO05D004223 1.4e-07 59.3 49 59.2
AUR62008230 Chenopodium quinoa HOM05D003549 ORTHO05D004223 1.9e-07 58.9 70 65.7
Ah.13g075720 Amaranthus hybridus HOM05D003549 ORTHO05D004223 9.3e-07 56.6 64 65.6
CDE10G1218 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 9.3e-07 56.6 64 57.8
CDE05G3179 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 2.1e-06 55.5 74 51.4
GSVIVG01007782001 Vitis vinifera HOM05D003549 ORTHO05D439742 2.7e-06 55.1 74 62.2
CARHR055420 Cardamine hirsuta HOM05D003549 ORTHO05D004223 6.0e-06 53.9 116 43.1
Medtr4g105790 Medicago truncatula HOM05D003549 ORTHO05D002335 6.0e-06 53.9 48 68.8
Sopen04g010620 Solanum pennellii HOM05D037505 ORTHO05D004223 6.0e-06 53.9 45 82.2


User provided reference genes

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