Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 0.0e+00 1892.9 1001 100.0
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 0.0e+00 1642.5 1027 87.1
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 0.0e+00 1451.4 1029 75.7
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 0.0e+00 1449.1 1021 75.6
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 0.0e+00 1250.7 1038 66.3
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 0.0e+00 1234.6 1030 68.3
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 0.0e+00 1196.8 1031 63.8
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 0.0e+00 1196.4 1036 64.5
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 0.0e+00 1177.9 1012 63.8
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 0.0e+00 1104.7 1119 57.0
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 0.0e+00 1097.4 1119 56.7
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 4.0e-270 935.3 547 82.6
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 2.4e-251 872.8 1110 51.5
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 1.2e-250 870.5 1103 48.7
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 2.1e-250 869.8 1122 50.4
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 3.9e-249 865.5 1143 49.1
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 5.1e-249 865.1 1009 49.7
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.9e-248 863.2 1094 48.3
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 5.6e-248 861.7 1122 46.6
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 5.6e-248 861.7 1101 48.0
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 1.4e-246 857.1 1122 46.5
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 1.9e-243 846.7 1123 46.5
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 2.7e-242 842.8 1110 46.8
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 4.3e-240 835.5 1149 47.8
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 7.4e-240 834.7 1101 47.0
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 2.4e-238 829.7 1047 48.2
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 2.6e-237 826.2 1163 45.2
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 6.5e-236 821.6 925 51.0
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 3.2e-235 819.3 1174 43.8
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 5.1e-233 812.0 1125 48.4
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 1.5e-232 810.4 1194 44.3
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 1.4e-230 803.9 1089 47.3
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 1.8e-230 803.5 1125 44.7
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 1.8e-230 803.5 1144 46.3
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 3.1e-230 802.7 1012 48.8
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 4.5e-229 798.9 1095 47.0
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 4.5e-229 798.9 1079 48.7
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 1.7e-228 797.0 1054 47.1
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 2.2e-228 796.6 1049 47.5
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 6.5e-228 795.0 1123 43.8
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 8.5e-228 794.7 1045 47.6
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 9.7e-224 781.2 847 51.7
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 3.7e-223 779.2 858 50.7
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 1.4e-222 777.3 1052 46.9
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 4.5e-221 772.3 1026 46.9
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 1.1e-216 757.7 1086 43.8
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 2.4e-214 750.0 1066 44.7
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 3.1e-214 749.6 966 46.1
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 4.5e-213 745.7 1066 44.2
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 7.7e-213 745.0 860 49.7
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 1.3e-212 744.2 556 65.8
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 3.9e-209 732.6 1126 43.0
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 4.1e-206 722.6 1044 43.0
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 1.8e-201 707.2 1002 42.6
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 4.0e-201 706.1 1012 43.2
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 4.0e-201 706.1 1103 42.2
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 3.4e-200 703.0 898 46.4
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 4.4e-200 702.6 1100 41.3
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 5.7e-200 702.2 1108 41.6
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 1.4e-198 697.6 1007 42.6
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 1.8e-198 697.2 1088 41.4
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 3.1e-198 696.4 1014 43.0
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 2.7e-197 693.3 988 42.6
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 1.7e-196 690.6 1023 42.5
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 3.8e-196 689.5 1001 43.3
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 8.5e-196 688.3 1007 42.1
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 3.2e-195 686.4 1059 41.5
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 4.2e-195 686.0 1076 43.1
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 2.1e-194 683.7 1091 41.5
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 4.7e-194 682.6 1013 42.5
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 8.0e-194 681.8 1068 41.7
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 1.2e-192 677.9 1138 40.6
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 1.2e-192 677.9 1067 41.6
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 2.6e-192 676.8 1078 41.7
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 1.3e-191 674.5 1052 40.5
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 2.2e-191 673.7 1033 41.4
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 2.8e-191 673.3 981 42.5
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 1.4e-190 671.0 986 42.2
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 1.4e-190 671.0 1098 41.4
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 2.4e-190 670.2 864 46.3
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 1.2e-189 667.9 619 55.7
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 1.2e-189 667.9 987 42.0
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 1.0e-188 664.8 885 44.2
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 1.5e-187 661.0 1062 40.4
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 1.9e-187 660.6 909 44.7
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 9.5e-187 658.3 858 45.5
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 2.6e-184 650.2 982 42.0
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 1.3e-183 647.9 959 43.5
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 2.3e-180 637.1 867 44.2
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 6.6e-180 635.6 959 43.2
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 8.0e-178 628.6 965 42.5
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 1.8e-177 627.5 567 57.5
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 1.4e-169 601.3 1063 37.8
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 1.1e-166 591.7 888 44.3
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 4.1e-166 589.7 863 42.3
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 3.6e-162 576.6 666 49.1
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 8.1e-162 575.5 571 52.2
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 2.2e-159 567.4 509 57.0
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 6.8e-153 545.8 975 39.1
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.4e-145 521.5 1100 36.5
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 4.8e-130 469.9 389 62.0
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 6.5e-127 459.5 425 55.5
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 5.5e-126 456.4 311 69.1
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 1.1e-123 448.7 897 37.5
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 5.0e-119 433.3 1077 33.1
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 1.1e-118 432.2 751 36.8
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 3.9e-116 423.7 578 42.7
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 3.3e-115 420.6 548 42.9
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 7.7e-112 409.5 437 50.6
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 1.2e-109 402.1 596 40.8
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 1.2e-109 402.1 500 41.0
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 1.9e-102 378.3 798 36.5
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 1.2e-93 349.0 859 34.7
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 2.3e-76 291.6 225 67.1
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 4.7e-69 267.3 223 60.1
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 2.3e-68 265.0 727 34.4
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 4.4e-59 234.2 623 31.3
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 3.3e-54 218.0 658 31.2
Lalb_Chr23g0273291 Lupinus albus HOM05D000922 ORTHO05D007418 1.5e-46 192.6 616 31.8
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 2.4e-33 148.7 268 36.2
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 6.7e-23 114.0 81 71.6
PRCOL_00005721 Prasinoderma coloniale HOM05D000922 ORTHO05D007418 2.7e-16 92.0 197 32.0
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 1.8e-15 89.4 92 48.9
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 2.3e-15 89.0 69 62.3
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 6.7e-15 87.4 94 47.9
Actinidia33076 Actinidia chinensis HOM05D000922 ORTHO05D007418 8.7e-15 87.0 170 37.1
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 1.5e-14 86.3 57 66.7
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 1.9e-14 85.9 49 77.6
Cfa000646 Carpinus fangiana HOM05D000922 ORTHO05D007418 6.2e-13 80.9 150 38.7
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 8.1e-13 80.5 53 66.0
FAN04G1664 Fragaria x ananassa HOM05D000922 ORTHO05D007418 3.2e-09 68.6 127 37.0


User provided reference genes

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