Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G180900 Glycine max HOM05D000003 ORTHO05D000006 9.7e-46 186.4 92 100.0
Lj1g0006455 Lotus japonicus HOM05D000003 ORTHO05D000006 2.4e-20 102.1 91 50.5
Glyma.18G124400 Glycine max HOM05D000003 ORTHO05D000006 2.9e-18 95.1 91 46.2
Glyma.09G182800 Glycine max HOM05D000003 ORTHO05D000006 4.2e-17 91.3 67 58.2
Glyma.10G082200 Glycine max HOM05D002777 ORTHO05D000006 5.5e-17 90.9 82 46.3
Phvul.010G087401 Phaseolus vulgaris HOM05D000003 ORTHO05D000006 8.0e-16 87.0 91 46.2
CSS0039659 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 3.7e-13 78.2 90 44.4
Lj6g0001957 Lotus japonicus HOM05D002777 ORTHO05D000006 6.3e-13 77.4 84 45.2
Lj6g0003824 Lotus japonicus HOM05D002777 ORTHO05D001516 3.1e-12 75.1 88 37.5
Gohir.A08G056950 Gossypium hirsutum HOM05D000003 ORTHO05D000006 4.1e-12 74.7 91 40.7
CSS0010630 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 2.0e-11 72.4 81 39.5
CSS0036156 Camellia sinensis var. sinensis HOM05D013965 ORTHO05D000006 2.7e-11 72.0 91 38.5
CSS0033111 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 5.9e-11 70.9 81 38.3
CSS0038721 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 7.8e-11 70.5 81 40.7
CSS0041297 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 7.8e-11 70.5 81 38.3
Gohir.A13G074451 Gossypium hirsutum HOM05D000003 ORTHO05D000006 1.3e-10 69.7 91 38.5
Medtr0426s0010 Medicago truncatula HOM05D000003 ORTHO05D000006 2.3e-10 68.9 81 37.0
ClCG03G010470 Citrullus lanatus HOM05D000003 ORTHO05D000004 2.9e-10 68.6 87 37.9
CSS0015394 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 5.0e-10 67.8 79 38.0
Thecc.05G279300 Theobroma cacao HOM05D012808 ORTHO05D000006 5.0e-10 67.8 91 34.1
CSS0005580 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 6.6e-10 67.4 81 39.5
CSS0046923 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 8.6e-10 67.0 81 38.3
MBI16_g31707_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 8.6e-10 67.0 87 34.5
CSS0011923 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 1.1e-09 66.6 79 38.0
Potri.013G148950 Populus trichocarpa HOM05D000003 ORTHO05D000006 1.1e-09 66.6 82 39.0
CSS0039300 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 1.5e-09 66.2 81 37.0
Medtr7g057470 Medicago truncatula HOM05D000003 ORTHO05D000006 1.5e-09 66.2 77 37.7
Medtr7g057490 Medicago truncatula HOM05D000003 ORTHO05D000006 1.5e-09 66.2 77 37.7
PSO302G0244 Papaver somniferum HOM05D000003 ORTHO05D000006 1.5e-09 66.2 88 36.4
CSS0013840 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 1.9e-09 65.9 79 39.2
TPR.G35686 Trifolium pratense HOM05D000003 ORTHO05D000006 1.9e-09 65.9 91 31.9
CSS0007993 Camellia sinensis var. sinensis HOM05D013965 ORTHO05D000006 2.5e-09 65.5 75 40.0
CSS0030282 Camellia sinensis var. sinensis HOM05D013965 ORTHO05D000006 2.5e-09 65.5 75 40.0
CSS0020053 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.3e-09 65.1 91 33.0
Lalb_Chr12g0203751 Lupinus albus HOM05D036797 ORTHO05D036533 3.3e-09 65.1 81 34.6
PSO170G4394 Papaver somniferum HOM05D000003 ORTHO05D000006 3.3e-09 65.1 87 32.2
CSS0004372 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 4.3e-09 64.7 83 36.1
CSS0040117 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 4.3e-09 64.7 83 38.6
PSO566G0317 Papaver somniferum HOM05D000003 ORTHO05D000006 4.3e-09 64.7 90 31.1
CSS0018071 Camellia sinensis var. sinensis HOM05D013965 ORTHO05D000006 5.6e-09 64.3 87 39.1
CiPaw.13G122400 Carya illinoinensis HOM05D000003 ORTHO05D000006 5.6e-09 64.3 86 34.9
CSS0036010 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 7.3e-09 63.9 83 37.3
PSO063G5944 Papaver somniferum HOM05D000003 ORTHO05D000006 7.3e-09 63.9 87 31.0
CiPaw.06G165800 Carya illinoinensis HOM05D000003 ORTHO05D000006 9.5e-09 63.5 86 33.7
COL.COLO4_28775 Corchorus olitorius HOM05D008263 ORTHO05D009583 9.5e-09 63.5 90 34.4
MBI11_g04612_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 9.5e-09 63.5 88 31.8
PSO832G3822 Papaver somniferum HOM05D000003 ORTHO05D000006 9.5e-09 63.5 87 34.5
CiPaw.06G024700 Carya illinoinensis HOM05D000003 ORTHO05D000006 1.2e-08 63.2 87 33.3
CiPaw.12G024400 Carya illinoinensis HOM05D000003 ORTHO05D000006 1.2e-08 63.2 86 37.2
CSS0004052 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 1.6e-08 62.8 79 35.4
Duzib147G1219 Durio zibethinus HOM05D000003 ORTHO05D000006 1.6e-08 62.8 90 35.6
Duzib147G1313 Durio zibethinus HOM05D000003 ORTHO05D000006 1.6e-08 62.8 90 35.6
Oeu002628.1 Olea europaea HOM05D000003 ORTHO05D000006 1.6e-08 62.8 87 36.8
CiPaw.11G178800 Carya illinoinensis HOM05D000003 ORTHO05D000006 2.1e-08 62.4 86 34.9
CiPaw.12G097200 Carya illinoinensis HOM05D000003 ORTHO05D000006 2.1e-08 62.4 86 36.0
Glyma.06G173600 Glycine max HOM05D002777 ORTHO05D000006 2.1e-08 62.4 42 59.5
Medtr5g054740 Medicago truncatula HOM05D008558 ORTHO05D011658 2.1e-08 62.4 90 38.9
CSS0030478 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 2.8e-08 62.0 74 39.2
CiPaw.14G112600 Carya illinoinensis HOM05D000003 ORTHO05D000006 2.8e-08 62.0 86 32.6
MBI19_g24071_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 2.8e-08 62.0 88 38.6
TPR.G27496 Trifolium pratense HOM05D000003 ORTHO05D000004 2.8e-08 62.0 74 40.5
CiPaw.01G094800 Carya illinoinensis HOM05D000003 ORTHO05D000006 3.6e-08 61.6 86 32.6
CSS0028435 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.7e-08 61.2 82 36.6
CSS0045024 Camellia sinensis var. sinensis HOM05D013965 ORTHO05D000006 4.7e-08 61.2 85 32.9
CiPaw.10G022700 Carya illinoinensis HOM05D000003 ORTHO05D000006 4.7e-08 61.2 90 33.3
CSS0006902 Camellia sinensis var. sinensis HOM05D013965 ORTHO05D000006 6.1e-08 60.8 75 38.7
CSS0013558 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 6.1e-08 60.8 87 36.8
CSS0044011 Camellia sinensis var. sinensis HOM05D013965 ORTHO05D000006 6.1e-08 60.8 81 39.5
CiPaw.01G225900 Carya illinoinensis HOM05D000003 ORTHO05D000006 6.1e-08 60.8 86 33.7
ClCG04G012890 Citrullus lanatus HOM05D000003 ORTHO05D000004 6.1e-08 60.8 90 35.6
Hund13902 Selenicereus undatus HOM05D008000 ORTHO05D010275 6.1e-08 60.8 88 35.2
Hund15412 Selenicereus undatus HOM05D000003 ORTHO05D000006 6.1e-08 60.8 88 35.2
CiPaw.03G000600 Carya illinoinensis HOM05D000003 ORTHO05D000006 8.0e-08 60.5 86 36.0
CiPaw.02G060000 Carya illinoinensis HOM05D000003 ORTHO05D000006 1.0e-07 60.1 85 34.1
CiPaw.06G060200 Carya illinoinensis HOM05D000003 ORTHO05D000006 1.0e-07 60.1 86 33.7
Gohir.A01G050120 Gossypium hirsutum HOM05D000003 ORTHO05D000006 1.0e-07 60.1 84 36.9
Medtr7g083690 Medicago truncatula HOM05D000003 ORTHO05D000004 1.0e-07 60.1 75 33.3
PSO063G3697 Papaver somniferum HOM05D000003 ORTHO05D000006 1.4e-07 59.7 88 30.7
PSO210G4273 Papaver somniferum HOM05D000003 ORTHO05D000006 1.4e-07 59.7 87 34.5
Phvul.006G018400 Phaseolus vulgaris HOM05D036797 ORTHO05D036533 1.4e-07 59.7 83 30.1
CiPaw.03G231100 Carya illinoinensis HOM05D000003 ORTHO05D000006 1.8e-07 59.3 86 31.4
CiPaw.06G055400 Carya illinoinensis HOM05D000003 ORTHO05D000006 1.8e-07 59.3 86 33.7
CiPaw.06G163400 Carya illinoinensis HOM05D000003 ORTHO05D000006 1.8e-07 59.3 85 32.9
Gohir.A09G018865 Gossypium hirsutum HOM05D000003 ORTHO05D000006 1.8e-07 59.3 91 36.3
Medtr6g016175 Medicago truncatula HOM05D000003 ORTHO05D000006 1.8e-07 59.3 77 37.7
CiPaw.03G092400 Carya illinoinensis HOM05D000003 ORTHO05D000006 2.3e-07 58.9 87 32.2
CiPaw.11G066600 Carya illinoinensis HOM05D000003 ORTHO05D000006 2.3e-07 58.9 90 31.1
PSO017G7364 Papaver somniferum HOM05D000003 ORTHO05D000006 2.3e-07 58.9 87 31.0
Hund30486 Selenicereus undatus HOM05D001165 ORTHO05D000006 2.3e-07 58.9 86 32.6
CiPaw.01G031000 Carya illinoinensis HOM05D000003 ORTHO05D000006 3.0e-07 58.5 86 31.4
CiPaw.02G057800 Carya illinoinensis HOM05D000003 ORTHO05D000006 3.0e-07 58.5 88 34.1
CiPaw.03G074300 Carya illinoinensis HOM05D000003 ORTHO05D000006 3.0e-07 58.5 86 31.4
CiPaw.05G173100 Carya illinoinensis HOM05D000003 ORTHO05D000006 3.0e-07 58.5 86 34.9
CiPaw.15G041600 Carya illinoinensis HOM05D000003 ORTHO05D000006 3.0e-07 58.5 86 31.4
Thecc.01G281100 Theobroma cacao HOM05D015720 ORTHO05D000006 3.0e-07 58.5 86 31.4
CiPaw.01G208000 Carya illinoinensis HOM05D000003 ORTHO05D000006 4.0e-07 58.2 86 32.6
CiPaw.07G008100 Carya illinoinensis HOM05D000003 ORTHO05D000006 4.0e-07 58.2 87 31.0
CiPaw.08G057000 Carya illinoinensis HOM05D000003 ORTHO05D000006 4.0e-07 58.2 86 33.7
Gohir.A04G039600 Gossypium hirsutum HOM05D000003 ORTHO05D000006 4.0e-07 58.2 85 32.9
PSO782G5551 Papaver somniferum HOM05D000003 ORTHO05D000006 4.0e-07 58.2 87 29.9
QL01p030568 Quercus lobata HOM05D000003 ORTHO05D000006 4.0e-07 58.2 74 35.1
CiPaw.08G109000 Carya illinoinensis HOM05D000003 ORTHO05D000006 5.2e-07 57.8 84 33.3
Gohir.A10G042050 Gossypium hirsutum HOM05D000003 ORTHO05D000006 5.2e-07 57.8 91 34.1
PSO063G1041 Papaver somniferum HOM05D000003 ORTHO05D000006 5.2e-07 57.8 87 36.8
PSO063G2714 Papaver somniferum HOM05D000003 ORTHO05D000006 5.2e-07 57.8 84 34.5
CANSAT11G2262 Cannabis sativa HOM05D000003 ORTHO05D000006 6.8e-07 57.4 87 32.2
ECA248G1501 Erigeron canadensis HOM05D000003 ORTHO05D000006 6.8e-07 57.4 91 30.8
PSO111G0006 Papaver somniferum HOM05D000003 ORTHO05D000006 6.8e-07 57.4 87 36.8
Atru.chr2.2565 Acer truncatum HOM05D000003 ORTHO05D000004 8.9e-07 57.0 84 41.7
CiPaw.09G124600 Carya illinoinensis HOM05D000003 ORTHO05D000006 8.9e-07 57.0 78 33.3
CSS0017637 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 1.2e-06 56.6 79 35.4
CiPaw.11G119300 Carya illinoinensis HOM05D000003 ORTHO05D000006 1.2e-06 56.6 90 31.1
QL06p035637 Quercus lobata HOM05D000141 ORTHO05D004993 1.2e-06 56.6 80 40.0
Hund10465 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.2e-06 56.6 88 34.1
Hund12149 Selenicereus undatus HOM05D000003 ORTHO05D000006 1.2e-06 56.6 86 31.4
CSS0013913 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.5e-06 56.2 68 35.3
CiPaw.05G158600 Carya illinoinensis HOM05D000003 ORTHO05D000006 1.5e-06 56.2 86 31.4
CiPaw.08G116600 Carya illinoinensis HOM05D000003 ORTHO05D000006 1.5e-06 56.2 86 31.4
Psat6g181000 Pisum sativum HOM05D000003 ORTHO05D000006 2.0e-06 55.8 72 33.3
Cpa.g.sc7.211 Carica papaya HOM05D000003 ORTHO05D000006 2.6e-06 55.5 78 33.3
ClCG05G007310 Citrullus lanatus HOM05D000003 ORTHO05D000006 2.6e-06 55.5 74 32.4
Medtr1g061220 Medicago truncatula HOM05D001201 ORTHO05D001100 2.6e-06 55.5 77 35.1
CSS0035157 Camellia sinensis var. sinensis HOM05D013965 ORTHO05D000006 3.4e-06 55.1 79 35.4
CiPaw.08G080100 Carya illinoinensis HOM05D000003 ORTHO05D000006 3.4e-06 55.1 86 30.2
Medtr1g068728 Medicago truncatula HOM05D000003 ORTHO05D000006 3.4e-06 55.1 77 35.1
Cpa.g.sc29.11 Carica papaya HOM05D000003 ORTHO05D000006 4.4e-06 54.7 86 30.2
CiPaw.04G081300 Carya illinoinensis HOM05D000003 ORTHO05D000006 4.4e-06 54.7 75 32.0
Hma1.2p1_0057F.1_g032280 Hydrangea macrophylla HOM05D000003 ORTHO05D000006 4.4e-06 54.7 85 31.8
CSS0032143 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 5.7e-06 54.3 81 37.0
CiPaw.12G029100 Carya illinoinensis HOM05D000003 ORTHO05D000006 5.7e-06 54.3 73 30.1
Lj4g0005812 Lotus japonicus HOM05D007807 ORTHO05D000006 5.7e-06 54.3 56 44.6
Nitab4.5_0000563g0240 Nicotiana tabacum HOM05D006213 ORTHO05D008107 5.7e-06 54.3 83 33.7
PSO063G0767 Papaver somniferum HOM05D000003 ORTHO05D000004 5.7e-06 54.3 79 30.4
QL03p043458 Quercus lobata HOM05D000003 ORTHO05D000006 5.7e-06 54.3 81 35.8
QL04p076801 Quercus lobata HOM05D005437 ORTHO05D006699 5.7e-06 54.3 74 35.1
Hund21125 Selenicereus undatus HOM05D008000 ORTHO05D010275 5.7e-06 54.3 88 31.8
CSS0012933 Camellia sinensis var. sinensis HOM05D000625 ORTHO05D000467 7.5e-06 53.9 62 38.7
CiPaw.03G042600 Carya illinoinensis HOM05D000003 ORTHO05D000006 7.5e-06 53.9 70 35.7
CsaV3_2G034750 Cucumis sativus L. HOM05D000003 ORTHO05D000006 7.5e-06 53.9 87 29.9
Gohir.A06G194420 Gossypium hirsutum HOM05D000003 ORTHO05D000006 7.5e-06 53.9 83 32.5
Manes.16G057209 Manihot esculenta HOM05D000003 ORTHO05D000006 7.5e-06 53.9 76 36.8
Medtr0032s0090 Medicago truncatula HOM05D000003 ORTHO05D000006 7.5e-06 53.9 75 32.0
QL03p046628 Quercus lobata HOM05D000003 ORTHO05D000006 7.5e-06 53.9 80 33.8
CSS0049674 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 9.8e-06 53.5 79 34.2
CiPaw.01G048000 Carya illinoinensis HOM05D000003 ORTHO05D000006 9.8e-06 53.5 86 32.6
CiPaw.11G176300 Carya illinoinensis HOM05D000003 ORTHO05D000006 9.8e-06 53.5 86 31.4
HanXRQChr04g0113211 Helianthus annuus HOM05D000003 ORTHO05D000004 9.8e-06 53.5 69 34.8
Medtr0128s0030 Medicago truncatula HOM05D000003 ORTHO05D000006 9.8e-06 53.5 77 33.8
Prupe.6G046000 Prunus persica HOM05D000003 ORTHO05D000006 9.8e-06 53.5 78 38.5


User provided reference genes

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