Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G180500 Glycine max HOM05D007643 ORTHO05D007801 4.9e-91 337.8 173 100.0
Glyma.04G185600 Glycine max HOM05D007643 ORTHO05D007801 4.5e-60 235.0 170 72.9
Phvul.009G176200 Phaseolus vulgaris HOM05D007643 ORTHO05D007801 9.6e-55 217.2 173 67.6
Lalb_Chr23g0273871 Lupinus albus HOM05D007643 ORTHO05D007801 1.8e-40 169.9 127 63.8
Lj1g0019261 Lotus japonicus HOM05D007643 ORTHO05D007801 5.3e-37 158.3 175 53.7
Medtr2g059060 Medicago truncatula HOM05D007643 ORTHO05D007801 3.4e-36 155.6 112 63.4
arahy.Tifrunner.gnm1.ann1.Z569TI Arachis hypogaea HOM05D007643 ORTHO05D007801 1.7e-35 153.3 122 63.1
TPR.G15310 Trifolium pratense HOM05D007643 ORTHO05D007801 1.1e-34 150.6 110 62.7
CiPaw.15G116100 Carya illinoinensis HOM05D007643 ORTHO05D007801 7.4e-31 137.9 122 55.7
Ca_26376_v3 Cicer arietinum L. HOM05D007643 ORTHO05D007801 1.3e-30 137.1 126 54.8
Psat1g029200 Pisum sativum HOM05D007643 ORTHO05D007801 2.2e-30 136.3 111 58.6
Prupe.5G211300 Prunus persica HOM05D007643 ORTHO05D007801 2.4e-29 132.9 122 55.7
Duzib068G1429 Durio zibethinus HOM05D007643 ORTHO05D007801 2.0e-28 129.8 121 52.1
Thecc.03G110800 Theobroma cacao HOM05D007643 ORTHO05D007801 1.3e-27 127.1 121 50.4
ClCG06G015360 Citrullus lanatus HOM05D007643 ORTHO05D007801 1.7e-27 126.7 119 52.9
CsaV3_1G003240 Cucumis sativus L. HOM05D007643 ORTHO05D007801 3.2e-26 122.5 119 52.1
RcHm_v2.0_Chr7g0183911 Rosa chinensis HOM05D007643 ORTHO05D007801 9.4e-26 120.9 121 52.9
Sed0015671 Sechium edule HOM05D007643 ORTHO05D007801 1.2e-25 120.6 125 49.6
COL.COLO4_28832 Corchorus olitorius HOM05D007643 ORTHO05D007801 2.1e-25 119.8 122 49.2
QL10p021414 Quercus lobata HOM05D007643 ORTHO05D007801 3.6e-25 119.0 114 54.4
Cfa019854 Carpinus fangiana HOM05D007643 ORTHO05D007801 1.8e-24 116.7 126 50.0
Gohir.D11G038100 Gossypium hirsutum HOM05D007643 ORTHO05D007801 1.8e-24 116.7 115 51.3
Gorai.007G040800 Gossypium raimondii HOM05D007643 ORTHO05D007801 2.3e-24 116.3 115 51.3
FAN18G4512 Fragaria x ananassa HOM05D007643 ORTHO05D007801 3.0e-24 115.9 173 45.1
VMungo1309G0126 Vigna mungo HOM05D007643 ORTHO05D007801 8.8e-24 114.4 59 88.1
MD14G1217500 Malus domestica HOM05D007643 ORTHO05D007801 4.4e-23 112.1 124 49.2
Actinidia35057 Actinidia chinensis HOM05D007643 ORTHO05D007801 9.7e-23 110.9 117 47.0
FAN08G1142 Fragaria x ananassa HOM05D007643 ORTHO05D007801 2.8e-22 109.4 119 50.4
TWI15G0080 Tripterygium wilfordii HOM05D007643 ORTHO05D007801 6.3e-22 108.2 106 48.1
MELO3C017259.2 Cucumis melo HOM05D007643 ORTHO05D007801 1.4e-21 107.1 88 60.2
Ciclev10022625m.g Citrus clementina HOM05D007643 ORTHO05D007801 1.8e-21 106.7 119 46.2
Actinidia18967 Actinidia chinensis HOM05D007643 ORTHO05D007801 2.4e-21 106.3 155 40.0
MD06G1206900 Malus domestica HOM05D007643 ORTHO05D007801 4.1e-21 105.5 174 40.2
Eucgr.K02633 Eucalyptus grandis HOM05D007643 ORTHO05D007801 5.3e-21 105.1 107 48.6
Gohir.D12G187200 Gossypium hirsutum HOM05D007643 ORTHO05D007801 7.7e-20 101.3 108 45.4
GSVIVG01008172001 Vitis vinifera HOM05D007643 ORTHO05D007801 7.7e-20 101.3 122 44.3
Gorai.008G200700 Gossypium raimondii HOM05D007643 ORTHO05D007801 1.3e-19 100.5 108 45.4
CANSAT11G0293 Cannabis sativa HOM05D007643 ORTHO05D007801 3.8e-19 99.0 87 56.3
TWI81G0573 Tripterygium wilfordii HOM05D007643 ORTHO05D007801 6.5e-19 98.2 106 44.3
Gohir.A12G184500 Gossypium hirsutum HOM05D007643 ORTHO05D007801 8.5e-19 97.8 108 44.4
Manes.14G090200 Manihot esculenta HOM05D007643 ORTHO05D007801 8.5e-19 97.8 106 49.1
vmacro16469 Vaccinium macrocarpon HOM05D007643 ORTHO05D007801 3.2e-18 95.9 115 43.5
PGR044G0452 Punica granatum HOM05D007643 ORTHO05D007801 4.2e-18 95.5 123 42.3
VMungo1309G2394 Vigna mungo HOM05D007643 ORTHO05D007801 5.5e-18 95.1 66 72.7
Dinv36824 Davidia involucrata HOM05D007643 ORTHO05D007801 7.2e-18 94.7 102 47.1
ATR0691G209 Amborella trichopoda HOM05D007643 ORTHO05D007801 1.0e-16 90.9 103 44.7
Rhsim12G0146900 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.0e-16 90.9 113 42.5
Dinv38625 Davidia involucrata HOM05D007643 ORTHO05D007801 3.0e-16 89.4 160 36.2
Atru.chr9.639 Acer truncatum HOM05D007643 ORTHO05D007801 6.8e-16 88.2 94 45.7
PSO063G2669 Papaver somniferum HOM05D007643 ORTHO05D007801 4.4e-15 85.5 113 38.9
Potri.012G065400 Populus trichocarpa HOM05D007643 ORTHO05D007801 4.4e-15 85.5 92 45.7
THA.LOC104800981 Tarenaya hassleriana HOM05D007643 ORTHO05D007801 5.7e-15 85.1 160 36.2
PSO782G0046 Papaver somniferum HOM05D007643 ORTHO05D007801 7.5e-15 84.7 95 40.0
CSS0044770 Camellia sinensis var. sinensis HOM05D007643 ORTHO05D007801 9.8e-15 84.3 95 46.3
Sabra12G0046800 Salix brachista HOM05D007643 ORTHO05D007801 2.8e-14 82.8 80 48.8
FvH4_5g13250 Fragaria vesca HOM05D007643 ORTHO05D007801 7.0e-13 78.2 80 53.8
Manes.06G079602 Manihot esculenta HOM05D007643 ORTHO05D007801 7.0e-13 78.2 78 52.6
Aa31LG11G2440 Aethionema arabicum HOM05D007643 ORTHO05D007801 9.1e-13 77.8 126 35.7
Nitab4.5_0002805g0050 Nicotiana tabacum HOM05D007643 ORTHO05D007801 3.5e-12 75.9 121 37.2
Nitab4.5_0000646g0290 Nicotiana tabacum HOM05D007643 ORTHO05D007801 1.7e-11 73.6 151 32.5
Peaxi162Scf00017g03267 Petunia axillaris HOM05D007643 ORTHO05D007801 2.9e-11 72.8 103 40.8
THA.LOC104818362 Tarenaya hassleriana HOM05D007643 ORTHO05D007801 2.9e-11 72.8 119 37.0
Migut.G00548 Erythranthe guttata HOM05D007643 ORTHO05D007801 5.0e-11 72.0 124 34.7
Sp2g24160 Schrenkiella parvula HOM05D010173 ORTHO05D007801 3.2e-10 69.3 97 38.1
CAN.G982.32 Capsicum annuum HOM05D007643 ORTHO05D007801 5.5e-10 68.6 107 34.6
SEGI_00634 Sequoiadendron giganteum HOM05D007643 ORTHO05D007801 5.5e-10 68.6 97 39.2
Thhalv10004975m.g Eutrema salsugineum HOM05D010173 ORTHO05D007801 9.4e-10 67.8 69 44.9
Lsat_1_v5_gn_4_112541 Lactuca sativa HOM05D007643 ORTHO05D007801 1.2e-09 67.4 126 34.1
Oeu059396.1 Olea europaea HOM05D007643 ORTHO05D007801 1.6e-09 67.0 90 37.8
Sopen03g033740 Solanum pennellii HOM05D007643 ORTHO05D007801 1.6e-09 67.0 111 36.9
Os09g0473966 Oryza sativa ssp. japonica HOM05D007643 ORTHO05D007801 2.1e-09 66.6 65 53.8
PGSC0003DMG400024520 Solanum tuberosum HOM05D007643 ORTHO05D007801 3.6e-09 65.9 111 36.9
CDE02G0802 Ceratophyllum demersum HOM05D007643 ORTHO05D007801 4.7e-09 65.5 90 40.0
SGA_v2.0_scaffold67G22694 Striga asiatica HOM05D007643 ORTHO05D007801 4.7e-09 65.5 89 37.1
Ah.02g114340 Amaranthus hybridus HOM05D007643 ORTHO05D007801 1.0e-08 64.3 133 33.1
MSTRG.9860 Avicennia marina HOM05D007643 ORTHO05D007801 1.0e-08 64.3 91 34.1
Aqoxy3G03786 Aquilegia oxysepala HOM05D007643 ORTHO05D007801 1.4e-08 63.9 74 43.2
unitig_746.g26846 Utricularia gibba HOM05D007643 ORTHO05D007801 4.0e-08 62.4 67 38.8
Nitab4.5_0004190g0030 Nicotiana tabacum HOM05D007643 ORTHO05D007801 5.2e-08 62.0 90 40.0
Cc04_g08010 Coffea canephora HOM05D007643 ORTHO05D007801 8.8e-08 61.2 129 29.5
Nn3g17593 Nelumbo nucifera HOM05D007643 ORTHO05D007801 1.5e-07 60.5 63 42.9
Nitab4.5_0002449g0120 Nicotiana tabacum HOM05D007643 ORTHO05D007801 1.5e-07 60.5 76 40.8
Sed0026794 Sechium edule HOM05D007643 ORTHO05D007801 1.5e-07 60.5 68 42.6
HPP92_019460 Vanilla planifolia HOM05D007643 ORTHO05D007801 2.0e-07 60.1 96 37.5
MSTRG.4170 Avicennia marina HOM05D007643 ORTHO05D007801 4.4e-07 58.9 102 33.3
AUR62032152 Chenopodium quinoa HOM05D007643 ORTHO05D007801 5.7e-07 58.5 87 39.1
AUR62039686 Chenopodium quinoa HOM05D007643 ORTHO05D007801 5.7e-07 58.5 87 39.1
FAN13G0443 Fragaria x ananassa HOM05D007643 ORTHO05D007801 1.3e-06 57.4 45 57.8
Haze_18546 Corylus avellana HOM05D007643 ORTHO05D007801 2.8e-06 56.2 64 48.4


User provided reference genes

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