Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 2.4e-73 278.9 153 100.0
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 7.2e-54 214.2 138 85.5
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 2.2e-47 192.6 138 76.8
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 3.8e-39 165.2 161 60.2
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 7.3e-38 161.0 137 65.0
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 4.4e-35 151.8 136 64.7
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 7.0e-33 144.4 136 60.3
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 1.6e-32 143.3 136 57.4
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 2.0e-32 142.9 138 60.9
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 1.0e-31 140.6 138 60.1
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 6.2e-29 131.3 155 48.4
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 6.2e-29 131.3 136 56.6
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 4.4e-27 125.2 134 53.7
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 5.8e-27 124.8 138 47.8
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 9.8e-27 124.0 138 47.1
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 1.7e-26 123.2 138 44.9
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 4.9e-26 121.7 135 51.1
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 1.1e-25 120.6 134 52.2
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.9e-25 119.8 138 42.8
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 3.2e-25 119.0 135 45.2
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 3.2e-25 119.0 135 44.4
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 5.4e-25 118.2 159 44.0
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 9.2e-25 117.5 138 42.8
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 9.2e-25 117.5 138 42.0
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 3.5e-24 115.5 139 47.5
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 3.5e-24 115.5 135 43.0
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 6.0e-24 114.8 158 43.0
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 7.8e-24 114.4 135 44.4
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 7.8e-24 114.4 149 40.9
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 1.0e-23 114.0 138 42.8
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 1.0e-23 114.0 149 40.9
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 1.3e-23 113.6 156 46.8
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 1.3e-23 113.6 156 46.8
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 3.0e-23 112.5 149 41.6
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 3.9e-23 112.1 149 42.3
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 3.9e-23 112.1 149 39.6
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 3.9e-23 112.1 149 41.6
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 6.6e-23 111.3 135 45.2
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 1.1e-22 110.5 135 42.2
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 1.1e-22 110.5 135 47.4
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 1.1e-22 110.5 133 44.4
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 1.9e-22 109.8 149 39.6
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 4.3e-22 108.6 149 38.3
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 7.3e-22 107.8 135 43.0
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 7.3e-22 107.8 138 41.3
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 7.3e-22 107.8 135 42.2
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 1.2e-21 107.1 134 44.0
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 2.1e-21 106.3 135 42.2
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 2.1e-21 106.3 135 40.7
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 2.8e-21 105.9 133 43.6
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 2.8e-21 105.9 148 39.2
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 3.6e-21 105.5 133 42.9
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 4.7e-21 105.1 138 41.3
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 1.1e-20 104.0 133 42.1
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 1.4e-20 103.6 135 40.0
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 1.8e-20 103.2 148 39.2
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 2.3e-20 102.8 135 42.2
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 2.3e-20 102.8 133 41.4
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 3.1e-20 102.4 148 37.8
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 3.1e-20 102.4 135 41.5
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 4.0e-20 102.1 135 42.2
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 4.0e-20 102.1 135 42.2
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 4.0e-20 102.1 133 41.4
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 5.2e-20 101.7 138 39.9
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 6.8e-20 101.3 134 45.5
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 6.8e-20 101.3 137 46.7
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 6.8e-20 101.3 134 43.3
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 8.9e-20 100.9 127 46.5
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.2e-19 100.5 135 40.0
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 1.5e-19 100.1 136 44.1
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.5e-19 100.1 148 36.5
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 2.0e-19 99.8 138 38.4
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 2.6e-19 99.4 134 36.6
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 3.4e-19 99.0 134 44.0
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 4.4e-19 98.6 135 39.3
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 5.8e-19 98.2 135 43.0
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 7.5e-19 97.8 139 41.0
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 7.5e-19 97.8 138 37.0
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 7.5e-19 97.8 134 43.3
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 7.5e-19 97.8 148 37.8
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 7.5e-19 97.8 148 37.2
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 9.8e-19 97.4 145 38.6
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 1.3e-18 97.1 136 40.4
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.3e-18 97.1 149 36.2
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 2.2e-18 96.3 136 40.4
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 2.2e-18 96.3 138 39.1
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 2.2e-18 96.3 136 40.4
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 2.2e-18 96.3 138 39.1
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 2.2e-18 96.3 138 39.9
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 2.9e-18 95.9 136 41.2
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 3.7e-18 95.5 139 43.2
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 4.9e-18 95.1 133 44.4
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 8.3e-18 94.4 136 41.2
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 8.3e-18 94.4 134 41.8
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 1.9e-17 93.2 134 36.6
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.4e-17 92.8 134 41.0
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 3.2e-17 92.4 134 39.6
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 5.4e-17 91.7 136 41.2
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 5.4e-17 91.7 169 34.3
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 7.1e-17 91.3 136 39.0
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 9.2e-17 90.9 173 32.4
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 1.2e-16 90.5 134 40.3
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 1.6e-16 90.1 157 34.4
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 2.1e-16 89.7 167 35.9
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 2.7e-16 89.4 157 37.6
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 4.6e-16 88.6 134 39.6
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 6.0e-16 88.2 135 37.8
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.7e-15 86.7 138 36.2
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 2.3e-15 86.3 109 49.5
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 3.0e-15 85.9 136 37.5
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 3.9e-15 85.5 136 37.5
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 3.9e-15 85.5 136 37.5
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 1.1e-14 84.0 137 39.4
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 1.5e-14 83.6 197 27.9
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 1.9e-14 83.2 137 38.0
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 5.6e-14 81.6 169 32.0
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 9.5e-14 80.9 152 32.2
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 1.6e-13 80.1 85 54.1
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 3.6e-13 79.0 135 34.1
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 2.0e-11 73.2 153 31.4
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 1.7e-10 70.1 99 39.4
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 2.9e-10 69.3 135 33.3
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 1.1e-09 67.4 98 41.8
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 1.1e-09 67.4 125 35.2
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 2.7e-08 62.8 148 28.4
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 1.7e-07 60.1 120 33.3
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 1.9e-06 56.6 134 29.9
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 2.5e-06 56.2 81 34.6
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 4.3e-06 55.5 77 36.4


User provided reference genes

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