Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 6.7e-195 683.7 321 100.0
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 3.5e-175 618.2 321 87.9
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 4.5e-175 617.8 323 88.9
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 2.9e-174 615.1 321 87.5
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 4.0e-171 604.7 322 86.6
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 8.9e-171 603.6 321 86.6
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 5.8e-170 600.9 321 86.0
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 3.9e-166 588.2 321 84.1
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 8.0e-164 580.5 317 84.9
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 1.4e-163 579.7 321 82.2
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 1.5e-162 576.2 318 82.7
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 7.5e-162 573.9 313 85.3
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 1.4e-160 569.7 316 84.2
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 1.4e-160 569.7 316 83.9
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 3.2e-160 568.5 321 80.7
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 2.7e-159 565.5 321 81.0
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 2.7e-159 565.5 321 81.3
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 1.1e-155 553.5 308 81.5
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 5.2e-155 551.2 318 78.9
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 6.8e-155 550.8 323 78.0
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 8.9e-155 550.4 323 77.7
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 8.9e-155 550.4 323 77.7
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 1.5e-154 549.7 321 77.3
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 2.0e-154 549.3 323 77.7
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 3.4e-154 548.5 323 76.8
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 5.8e-154 547.7 322 78.9
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 5.8e-154 547.7 321 76.9
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 4.9e-153 544.7 319 77.1
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 6.4e-153 544.3 312 80.4
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 8.3e-153 543.9 321 78.2
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 1.1e-152 543.5 321 76.3
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 1.1e-152 543.5 321 78.2
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 9.2e-152 540.4 309 78.3
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 3.5e-151 538.5 320 75.9
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 6.0e-151 537.7 321 77.3
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 2.3e-150 535.8 319 76.5
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 2.3e-150 535.8 319 77.1
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 2.5e-149 532.3 309 76.4
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 2.5e-149 532.3 319 75.9
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 4.3e-149 531.6 319 76.2
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 1.2e-148 530.0 319 75.9
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 1.6e-148 529.6 321 76.0
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 4.7e-148 528.1 320 75.3
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 6.2e-148 527.7 320 76.6
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 6.2e-148 527.7 317 74.8
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 8.1e-148 527.3 320 76.2
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 1.1e-147 526.9 322 76.1
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 2.4e-147 525.8 319 73.7
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 5.2e-147 524.6 309 76.4
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 6.8e-147 524.2 322 75.2
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 6.8e-147 524.2 320 74.7
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 1.2e-146 523.5 306 76.5
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 1.5e-146 523.1 321 74.5
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 2.6e-146 522.3 319 74.9
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 3.4e-146 521.9 320 75.0
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 2.9e-145 518.8 320 73.8
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 2.9e-145 518.8 319 74.3
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 4.9e-145 518.1 307 75.9
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 2.4e-144 515.8 314 74.5
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 4.2e-144 515.0 320 73.4
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 2.1e-143 512.7 320 73.1
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 2.1e-143 512.7 311 75.2
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 2.7e-143 512.3 320 73.1
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 4.6e-143 511.5 321 73.5
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 7.8e-143 510.8 321 73.5
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 7.8e-143 510.8 323 74.0
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 1.0e-142 510.4 320 73.8
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 2.3e-142 509.2 318 74.5
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 5.1e-142 508.1 316 73.7
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 1.5e-141 506.5 317 72.9
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 1.9e-141 506.1 314 72.9
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 2.5e-141 505.8 313 73.8
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 3.3e-141 505.4 314 72.9
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 5.6e-141 504.6 314 72.9
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 5.6e-141 504.6 316 73.1
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 7.3e-141 504.2 316 72.8
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 9.6e-141 503.8 316 72.8
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 1.2e-140 503.4 319 72.7
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 1.6e-140 503.1 316 72.5
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 3.6e-140 501.9 314 73.2
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 3.6e-140 501.9 316 71.8
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 6.2e-140 501.1 315 73.3
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.1e-139 500.4 318 73.3
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.4e-139 500.0 319 73.0
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 2.4e-139 499.2 316 72.8
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 3.1e-139 498.8 321 72.0
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 4.0e-139 498.4 319 69.9
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 1.5e-138 496.5 320 70.3
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 1.5e-138 496.5 317 71.6
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 4.4e-138 495.0 319 71.5
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 5.8e-138 494.6 315 68.9
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 8.4e-137 490.7 308 71.8
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.4e-136 490.0 306 74.5
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 2.4e-136 489.2 310 71.0
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 2.4e-136 489.2 310 71.0
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 4.2e-136 488.4 321 72.3
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 7.1e-136 487.6 310 70.6
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 1.0e-134 483.8 310 70.0
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 1.0e-134 483.8 314 70.4
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 1.3e-134 483.4 312 69.6
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 1.3e-134 483.4 310 70.0
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 2.3e-134 482.6 312 69.2
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 3.0e-134 482.3 306 71.6
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 3.0e-134 482.3 306 71.6
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 3.0e-134 482.3 310 70.0
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 1.1e-133 480.3 312 69.6
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 1.1e-133 480.3 320 69.7
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 1.9e-133 479.6 310 68.7
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 1.9e-133 479.6 312 69.2
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 7.3e-133 477.6 310 70.3
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 9.6e-133 477.2 312 69.6
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 9.6e-133 477.2 307 70.0
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 1.6e-132 476.5 319 67.1
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 2.8e-132 475.7 321 66.4
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 4.8e-132 474.9 310 66.8
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 4.8e-132 474.9 302 73.8
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 8.1e-132 474.2 316 70.6
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 1.8e-131 473.0 310 68.1
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 3.1e-131 472.2 302 73.5
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 5.3e-131 471.5 319 66.1
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 5.8e-130 468.0 296 71.6
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 3.9e-126 455.3 313 64.5
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 1.5e-125 453.4 315 65.7
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 1.6e-124 449.9 312 66.3
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 4.0e-123 445.3 312 67.0
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 7.6e-122 441.0 282 71.3
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 1.4e-120 436.8 273 71.4
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 1.6e-119 433.3 319 63.6
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 3.5e-119 432.2 312 63.8
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 3.7e-116 422.2 306 58.2
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 2.4e-115 419.5 283 67.1
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 3.1e-115 419.1 306 60.1
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 1.2e-114 417.2 305 63.9
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 5.7e-109 398.3 318 63.2
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 5.7e-109 398.3 318 63.2
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 1.6e-108 396.7 308 56.8
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 7.7e-106 387.9 305 57.0
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 7.9e-103 377.9 218 76.6
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 2.2e-100 369.8 298 60.4
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 2.8e-100 369.4 223 74.4
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 1.8e-94 350.1 308 54.9
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 1.3e-92 344.0 312 51.0
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 3.6e-79 299.3 270 56.7
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 3.6e-71 272.7 306 47.7
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 8.8e-70 268.1 179 69.3
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 5.0e-65 252.3 261 51.7
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 6.4e-52 208.8 128 69.5
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 3.9e-49 199.5 132 72.7
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 1.9e-43 180.6 315 35.2
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.4e-43 180.3 114 74.6
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 1.8e-38 164.1 305 33.1
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 2.4e-30 137.1 251 37.5
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 3.4e-29 133.3 339 28.6
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 9.9e-29 131.7 95 56.8
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 1.1e-14 85.1 59 67.8
Oeu057324.1 Olea europaea HOM05D000434 ORTHO05D005992 2.4e-11 73.9 74 52.7


User provided reference genes

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