Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 6.6e-216 753.8 398 100.0
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 7.5e-127 458.0 398 64.3
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 7.2e-114 414.8 457 54.7
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 8.0e-113 411.4 419 59.2
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 1.0e-112 411.0 408 57.4
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 4.0e-112 409.1 455 54.1
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 1.8e-109 400.2 414 55.6
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 1.8e-109 400.2 425 55.1
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 3.2e-109 399.4 396 57.8
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 2.0e-108 396.7 421 55.1
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 3.6e-105 386.0 407 54.8
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 3.6e-105 386.0 407 54.8
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 1.4e-104 384.0 400 55.5
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 1.0e-99 367.9 417 53.2
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 2.4e-93 346.7 414 49.3
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 3.2e-93 346.3 423 48.5
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 5.1e-91 339.0 211 81.5
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 6.6e-91 338.6 421 47.5
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 6.6e-91 338.6 409 48.2
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 1.1e-90 337.8 416 48.3
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 1.5e-90 337.4 406 49.0
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 2.5e-90 336.7 411 49.6
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 1.6e-89 334.0 428 46.7
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 4.0e-88 329.3 413 48.2
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 7.1e-85 318.5 443 45.8
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 9.2e-85 318.2 433 46.2
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 1.2e-84 317.8 401 48.6
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 1.0e-83 314.7 418 48.1
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 3.0e-83 313.2 401 48.4
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 1.5e-82 310.8 447 44.5
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 1.9e-82 310.5 407 47.4
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 1.9e-82 310.5 412 46.6
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 5.6e-82 308.9 409 44.7
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 2.1e-81 307.0 420 45.0
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.1e-81 307.0 400 47.0
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.1e-81 307.0 401 46.4
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 2.8e-81 306.6 433 43.6
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 8.1e-81 305.1 379 47.2
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 8.1e-81 305.1 420 44.3
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 6.4e-78 295.4 454 43.8
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 4.2e-77 292.7 363 47.7
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 3.5e-76 289.7 398 44.5
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 6.0e-76 288.9 427 43.6
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 3.0e-75 286.6 402 43.0
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 8.7e-75 285.0 424 42.2
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 1.9e-74 283.9 383 43.9
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 1.3e-73 281.2 390 44.4
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 1.3e-73 281.2 415 41.4
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 1.1e-72 278.1 413 42.9
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 1.4e-72 277.7 423 40.4
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 1.8e-72 277.3 402 42.0
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 3.1e-72 276.6 407 41.5
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 1.5e-71 274.2 380 43.4
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 5.8e-71 272.3 413 42.6
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 9.9e-71 271.6 384 42.2
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 9.9e-71 271.6 400 42.2
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 1.3e-70 271.2 419 42.7
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 1.3e-70 271.2 401 41.4
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 1.7e-70 270.8 425 43.1
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 2.9e-70 270.0 406 42.1
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 2.9e-70 270.0 418 41.1
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 3.8e-70 269.6 456 39.0
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 2.4e-69 266.9 402 41.0
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 2.4e-69 266.9 370 43.2
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 5.4e-69 265.8 398 39.4
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 7.1e-69 265.4 421 39.9
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 1.6e-68 264.2 413 40.2
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 7.9e-68 261.9 420 41.4
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 5.1e-67 259.2 387 40.6
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 6.6e-67 258.8 399 40.6
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 1.1e-66 258.1 387 40.3
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 1.1e-66 258.1 396 41.7
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 1.9e-66 257.3 392 40.8
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 8.1e-65 251.9 377 40.3
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 2.4e-64 250.4 391 40.2
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 2.4e-64 250.4 401 38.9
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 9.0e-64 248.4 407 39.8
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 4.5e-63 246.1 410 39.5
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 7.1e-61 238.8 435 35.4
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 1.6e-60 237.7 386 39.9
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 5.1e-59 232.6 400 41.0
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 6.0e-52 209.1 395 36.5
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 1.0e-51 208.4 147 63.3
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.0e-51 208.4 161 60.9
Lalb_Chr08g0237181 Lupinus albus HOM05D005804 ORTHO05D006849 1.3e-51 208.0 120 78.3
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 3.9e-51 206.5 149 63.8
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.1e-50 204.9 189 55.0
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 5.7e-50 202.6 170 63.5
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 9.6e-50 201.8 147 63.3
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 1.1e-48 198.4 148 60.8
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 4.1e-48 196.4 419 35.6
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 5.3e-48 196.1 403 33.5
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 1.5e-47 194.5 515 31.3
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 1.0e-46 191.8 432 31.5
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 2.2e-46 190.7 159 64.8
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 1.9e-45 187.6 146 61.0
Carub.0007s1617 Capsella rubella HOM05D005804 ORTHO05D006849 1.3e-43 181.4 165 52.7
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 1.8e-43 181.0 350 37.7
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 8.7e-43 178.7 379 34.3
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 8.2e-41 172.2 391 33.8
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 5.3e-40 169.5 156 60.3
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 9.0e-40 168.7 156 60.3
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 2.9e-38 163.7 155 58.7
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 3.8e-38 163.3 304 41.8
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 1.8e-35 154.5 159 54.1
ATR0178G019 Amborella trichopoda HOM05D005804 ORTHO05D006849 2.3e-35 154.1 120 55.8
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 5.1e-35 152.9 308 37.3
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 2.2e-33 147.5 155 56.8
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 6.3e-33 146.0 301 39.5
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 1.4e-32 144.8 144 47.9
SGA_v2.0_scaffold110G31174 Striga asiatica HOM05D052586 ORTHO05D006849 1.2e-31 141.7 113 50.4
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 1.0e-30 138.7 474 27.8
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 1.6e-28 131.3 163 46.6
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 2.1e-28 131.0 159 45.3
SEGI_07598 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 1.0e-27 128.6 153 42.5
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 5.1e-27 126.3 142 43.0
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 5.1e-27 126.3 142 43.0
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 1.7e-25 121.3 127 55.9
Mapoly0096s0044 Marchantia polymorpha HOM05D005804 ORTHO05D006849 2.4e-24 117.5 125 40.0
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 3.1e-24 117.1 153 43.8
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 3.0e-19 100.5 152 42.1
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 4.0e-19 100.1 154 45.5
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 1.1e-18 98.6 184 34.8
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 9.7e-18 95.5 128 42.2
SalBow2G1912 Salvia bowleyana HOM05D000011 ORTHO05D000018 2.8e-17 94.0 77 54.5
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 8.2e-17 92.4 154 40.9
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 5.3e-16 89.7 68 58.8
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 1.0e-14 85.5 65 61.5
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 4.2e-13 80.1 262 32.4
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 8.0e-12 75.9 68 54.4
CSS0025658 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 1.5e-10 71.6 149 42.3
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 4.8e-09 66.6 49 65.3
Sabra15G0117400 Salix brachista HOM05D005804 ORTHO05D006849 7.0e-08 62.8 102 40.2
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 2.0e-07 61.2 183 30.1
Actinidia36808 Actinidia chinensis HOM05D005804 ORTHO05D006849 4.5e-07 60.1 73 42.5


User provided reference genes

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