Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G169300 Glycine max HOM05D007115 ORTHO05D008923 6.3e-123 444.1 224 100.0
Glyma.04G196500 Glycine max HOM05D007115 ORTHO05D008923 8.5e-112 407.1 224 92.4
Phvul.009G165800 Phaseolus vulgaris HOM05D007115 ORTHO05D008923 1.1e-103 380.2 223 88.8
VMungo1309G2111 Vigna mungo HOM05D007115 ORTHO05D008923 2.1e-102 375.9 223 87.0
TPR.G14207 Trifolium pratense HOM05D007115 ORTHO05D008923 6.1e-94 347.8 221 79.6
Ca_16052_v3 Cicer arietinum L. HOM05D007115 ORTHO05D008923 8.0e-94 347.4 225 80.4
Medtr3g099140 Medicago truncatula HOM05D007115 ORTHO05D008923 8.0e-94 347.4 223 79.4
Lj1g0010129 Lotus japonicus HOM05D007115 ORTHO05D008923 6.8e-93 344.4 222 81.1
Lalb_Chr11g0069511 Lupinus albus HOM05D007115 ORTHO05D008923 7.0e-90 334.3 225 78.7
Sc04g0000560 Simmondsia chinensis HOM05D007115 ORTHO05D008923 3.7e-83 312.0 222 71.2
Haze_07151 Corylus avellana HOM05D007115 ORTHO05D008923 4.1e-82 308.5 230 70.4
Cfa018785 Carpinus fangiana HOM05D007115 ORTHO05D008923 9.2e-82 307.4 228 70.6
CiPaw.12G043900 Carya illinoinensis HOM05D007115 ORTHO05D008923 3.5e-81 305.4 227 70.5
Sabra15G0118300 Salix brachista HOM05D007115 ORTHO05D008923 7.8e-81 304.3 223 70.0
Potri.015G097700 Populus trichocarpa HOM05D007115 ORTHO05D008923 1.0e-80 303.9 222 69.8
Atru.chr6.1807 Acer truncatum HOM05D007115 ORTHO05D008923 1.9e-79 299.7 224 68.3
TWI39G0929 Tripterygium wilfordii HOM05D007115 ORTHO05D008923 1.9e-79 299.7 232 68.1
Hma1.2p1_0014F.1_g009320 Hydrangea macrophylla HOM05D007115 ORTHO05D008923 5.6e-79 298.1 228 68.9
Actinidia25565 Actinidia chinensis HOM05D007115 ORTHO05D008923 2.1e-78 296.2 230 70.0
Cpa.g.sc13.101 Carica papaya HOM05D007115 ORTHO05D008923 2.8e-78 295.8 222 68.5
Dinv23157 Davidia involucrata HOM05D007115 ORTHO05D008923 2.8e-78 295.8 227 69.6
Prupe.5G150000 Prunus persica HOM05D007115 ORTHO05D008923 2.3e-77 292.7 230 66.5
Rhsim08G0191000 Rhododendron simsii HOM05D007115 ORTHO05D008923 5.2e-77 291.6 223 67.7
FvH4_5g08420 Fragaria vesca HOM05D007115 ORTHO05D008923 7.5e-76 287.7 224 67.4
Ciclev10032623m.g Citrus clementina HOM05D007115 ORTHO05D008923 9.8e-76 287.3 187 78.1
FAN13G1038 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.3e-75 287.0 222 66.7
RcHm_v2.0_Chr7g0190021 Rosa chinensis HOM05D007115 ORTHO05D008923 1.7e-75 286.6 228 66.7
FAN04G1902 Fragaria x ananassa HOM05D007115 ORTHO05D008923 2.2e-75 286.2 222 66.7
Manes.14G050500 Manihot esculenta HOM05D007115 ORTHO05D008923 2.9e-75 285.8 229 65.5
Hund02448 Selenicereus undatus HOM05D007115 ORTHO05D008923 3.7e-75 285.4 235 63.0
Oeu004998.1 Olea europaea HOM05D007115 ORTHO05D008923 4.9e-75 285.0 183 74.3
GSVIVG01008566001 Vitis vinifera HOM05D007115 ORTHO05D008923 6.4e-75 284.6 216 68.5
Duzib205G1497 Durio zibethinus HOM05D007115 ORTHO05D008923 8.3e-75 284.3 230 65.7
FAN08G1896 Fragaria x ananassa HOM05D007115 ORTHO05D008923 8.3e-75 284.3 222 66.2
MD06G1140800 Malus domestica HOM05D007115 ORTHO05D008923 8.3e-75 284.3 229 65.9
FAN18G3505 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.4e-74 283.5 224 67.0
vmacro19121 Vaccinium macrocarpon HOM05D007115 ORTHO05D008923 1.6e-73 280.0 187 74.3
CSS0028892 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 4.6e-73 278.5 184 76.6
Lj5A95G76 Lonicera japonica HOM05D007115 ORTHO05D008923 4.6e-73 278.5 188 73.9
CSS0028949 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 1.3e-72 276.9 184 75.5
QL10p002688 Quercus lobata HOM05D007115 ORTHO05D008923 2.3e-72 276.2 282 57.8
CANSAT80G2203 Cannabis sativa HOM05D007115 ORTHO05D008923 3.9e-72 275.4 203 70.4
PGSC0003DMG400015264 Solanum tuberosum HOM05D007115 ORTHO05D008923 1.1e-71 273.9 182 72.0
Thecc.03G130400 Theobroma cacao HOM05D007115 ORTHO05D008923 1.5e-71 273.5 229 62.9
ATR0790G002 Amborella trichopoda HOM05D007115 ORTHO05D008923 2.5e-71 272.7 204 66.7
Nitab4.5_0000624g0110 Nicotiana tabacum HOM05D007115 ORTHO05D008923 4.3e-71 271.9 199 65.3
Solyc03g019660.4 Solanum lycopersicum HOM05D007115 ORTHO05D008923 4.3e-71 271.9 200 67.0
ClCG03G003830 Citrullus lanatus HOM05D007115 ORTHO05D008923 5.6e-71 271.6 187 71.7
Sopen03g029960 Solanum pennellii HOM05D007115 ORTHO05D008923 7.3e-71 271.2 224 61.6
MELO3C002367.2 Cucumis melo HOM05D007115 ORTHO05D008923 9.5e-71 270.8 187 71.7
CsaV3_1G009730 Cucumis sativus L. HOM05D007115 ORTHO05D008923 1.6e-70 270.0 187 71.1
Nitab4.5_0001311g0160 Nicotiana tabacum HOM05D007115 ORTHO05D008923 1.6e-70 270.0 218 61.9
Aqoxy5G03328 Aquilegia oxysepala HOM05D007115 ORTHO05D008923 3.6e-70 268.9 233 64.4
MSTRG.11273 Avicennia marina HOM05D007115 ORTHO05D008923 4.7e-70 268.5 184 70.7
EL10Ac5g11401 Beta vulgaris HOM05D007115 ORTHO05D008923 3.1e-69 265.8 193 67.9
PGR083G2674 Punica granatum HOM05D007115 ORTHO05D008923 3.1e-69 265.8 171 75.4
THA.LOC104811583 Tarenaya hassleriana HOM05D007115 ORTHO05D008923 4.0e-69 265.4 234 60.7
HanXRQChr02g0034681 Helianthus annuus HOM05D007115 ORTHO05D008923 6.8e-69 264.6 214 65.4
Eucgr.B00101 Eucalyptus grandis HOM05D007115 ORTHO05D008923 1.2e-68 263.8 193 70.5
Lsat_1_v5_gn_1_33120 Lactuca sativa HOM05D007115 ORTHO05D008923 1.5e-68 263.5 235 58.7
CAN.G1611.7 Capsicum annuum HOM05D007115 ORTHO05D008923 3.4e-68 262.3 223 61.0
Peaxi162Scf00089g00121 Petunia axillaris HOM05D007115 ORTHO05D008923 1.4e-66 256.9 208 63.5
AUR62034838 Chenopodium quinoa HOM05D007115 ORTHO05D008923 1.9e-66 256.5 170 70.6
CDE02G1164 Ceratophyllum demersum HOM05D007115 ORTHO05D008923 3.2e-66 255.8 213 60.6
DCAR_007496 Daucus carota HOM05D007115 ORTHO05D008923 7.1e-66 254.6 242 60.7
unitig_8.g3030 Utricularia gibba HOM05D007115 ORTHO05D008923 9.2e-66 254.2 188 66.5
Carub.0007s1613 Capsella rubella HOM05D007115 ORTHO05D008923 1.2e-65 253.8 234 58.1
Migut.I00540 Erythranthe guttata HOM05D007115 ORTHO05D008923 1.2e-65 253.8 188 69.7
Gohir.D11G039800 Gossypium hirsutum HOM05D007115 ORTHO05D008923 2.1e-65 253.1 178 70.8
AL7G28270 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 2.7e-65 252.7 229 60.3
AT4G24930 Arabidopsis thaliana HOM05D007115 ORTHO05D008923 7.8e-65 251.1 233 59.7
Gohir.A11G036350 Gossypium hirsutum HOM05D007115 ORTHO05D008923 1.0e-64 250.8 173 71.7
CARHR232330 Cardamine hirsuta HOM05D007115 ORTHO05D008923 8.6e-64 247.7 226 59.7
BcaNung06011 Brassica carinata HOM05D007115 ORTHO05D008923 1.9e-63 246.5 229 59.4
ECA247G2755 Erigeron canadensis HOM05D001512 ORTHO05D001574 1.9e-63 246.5 157 72.0
Aa31LG7G10860 Aethionema arabicum HOM05D007115 ORTHO05D008923 2.5e-63 246.1 238 55.9
Thhalv10026135m.g Eutrema salsugineum HOM05D007115 ORTHO05D008923 2.5e-63 246.1 188 66.0
Gorai.007G042800 Gossypium raimondii HOM05D007115 ORTHO05D008923 2.5e-63 246.1 173 70.5
BolC1t01950H Brassica oleracea HOM05D007115 ORTHO05D008923 4.3e-63 245.4 209 62.7
Cc04_g09720 Coffea canephora HOM05D007115 ORTHO05D008923 4.3e-63 245.4 224 59.8
SalBow5G3672 Salvia bowleyana HOM05D007115 ORTHO05D008923 7.3e-63 244.6 215 61.4
A01p16220 Brassica napus HOM05D007115 ORTHO05D008923 3.6e-62 242.3 191 64.9
BraA01t01558Z Brassica rapa HOM05D007115 ORTHO05D008923 3.6e-62 242.3 191 64.9
arahy.Tifrunner.gnm1.ann1.YTW6SU Arachis hypogaea HOM05D007115 ORTHO05D008923 1.1e-61 240.7 233 62.2
Sp7g22910 Schrenkiella parvula HOM05D007115 ORTHO05D008923 1.1e-61 240.7 190 64.2
PSO017G0512 Papaver somniferum HOM05D007115 ORTHO05D008923 4.0e-61 238.8 211 60.7
HPP92_023120 Vanilla planifolia HOM05D007115 ORTHO05D008923 6.8e-61 238.0 186 60.8
C01p20210 Brassica napus HOM05D007115 ORTHO05D008923 2.6e-60 236.1 192 64.1
Nn4g22293 Nelumbo nucifera HOM05D007115 ORTHO05D008923 5.8e-60 235.0 136 80.1
SGA_v2.0_scaffold258G45802 Striga asiatica HOM05D007115 ORTHO05D008923 7.6e-60 234.6 240 54.2
TAR622G0416 Trochodendron aralioides HOM05D007115 ORTHO05D008923 7.6e-60 234.6 135 80.0
Psat5g051920 Pisum sativum HOM05D007115 ORTHO05D008923 4.2e-50 202.2 140 73.6
arahy.Tifrunner.gnm1.ann1.BUY811 Arachis hypogaea HOM05D007115 ORTHO05D008923 5.6e-47 191.8 164 70.1
Zm00001eb334110 Zea mays HOM05D007115 ORTHO05D008923 2.0e-44 183.3 155 59.4
COL.COLO4_28141 Corchorus olitorius HOM05D007115 ORTHO05D008923 1.3e-38 164.1 98 78.6
Os01g0102300 Oryza sativa ssp. japonica HOM05D007115 ORTHO05D008923 4.8e-38 162.2 165 52.7
AUR62029602 Chenopodium quinoa HOM05D007115 ORTHO05D008923 1.8e-37 160.2 100 71.0
Pp3c6_23090 Physcomitrium patens HOM05D007115 ORTHO05D008923 6.9e-37 158.3 198 43.9
MBI11_g41395_MAGBIO Magnolia biondii HOM05D007115 ORTHO05D008923 1.9e-34 150.2 134 58.2
SMO356G0600 Selaginella moellendorffii HOM05D007115 ORTHO05D008923 9.6e-31 137.9 175 43.4
Sed0002696 Sechium edule HOM05D007115 ORTHO05D008923 6.7e-24 115.2 89 67.4
SEGI_00544 Sequoiadendron giganteum HOM05D007115 ORTHO05D008923 8.7e-24 114.8 111 51.4
Ah.02g114850 Amaranthus hybridus HOM05D007115 ORTHO05D008923 9.6e-23 111.3 101 60.4
ATR0405G001 Amborella trichopoda HOM05D007115 ORTHO05D008923 2.1e-22 110.2 62 82.3
Actinidia18342 Actinidia chinensis HOM05D007115 ORTHO05D008923 4.8e-22 109.0 64 73.4
Actinidia18341 Actinidia chinensis HOM05D000804 ORTHO05D000989 6.7e-16 88.6 108 55.6
AL6G46780 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 8.2e-14 81.6 90 53.3
FAN18G1815 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.1e-13 81.3 60 63.3
FAN13G2062 Fragaria x ananassa HOM05D007115 ORTHO05D008923 6.9e-13 78.6 62 62.9
Sabra12G0072200 Salix brachista HOM05D007115 ORTHO05D008923 4.5e-12 75.9 61 60.7
PRCOL_00005130 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 1.6e-09 67.4 106 34.0
FAN04G0070 Fragaria x ananassa HOM05D007115 ORTHO05D008923 6.7e-08 62.0 55 58.2


User provided reference genes

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