Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 1.2e-100 369.8 183 100.0
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 5.5e-85 317.8 183 85.8
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 3.4e-82 308.5 183 85.8
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 9.2e-72 273.9 183 74.9
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 2.8e-68 262.3 183 72.1
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 4.0e-67 258.5 183 72.7
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 4.9e-65 251.5 184 69.6
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 1.2e-63 246.9 183 68.3
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 1.2e-63 246.9 184 68.5
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 4.6e-63 245.0 184 68.5
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 4.6e-63 245.0 181 65.7
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 3.0e-62 242.3 180 67.8
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 8.6e-62 240.7 183 67.8
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 7.3e-61 237.7 182 64.8
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 9.5e-61 237.3 183 63.9
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 1.6e-60 236.5 183 64.5
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 2.8e-60 235.7 183 63.4
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 1.4e-59 233.4 192 62.0
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 1.8e-59 233.0 183 63.4
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 2.3e-59 232.6 184 64.1
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.0e-59 231.9 184 64.7
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 5.2e-59 231.5 183 66.1
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 5.2e-59 231.5 184 64.7
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.5e-58 229.9 184 64.1
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.5e-58 229.9 183 63.9
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 2.6e-58 229.2 149 74.5
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 7.5e-58 227.6 186 62.4
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 9.9e-58 227.3 185 61.1
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 1.3e-57 226.9 185 60.5
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 1.7e-57 226.5 185 62.7
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 1.7e-57 226.5 187 61.5
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 2.9e-57 225.7 183 62.3
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 4.9e-57 224.9 183 61.7
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 6.4e-57 224.6 188 62.8
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 1.9e-56 223.0 183 61.2
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 3.2e-56 222.2 184 60.9
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 4.1e-56 221.9 184 62.5
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 5.4e-56 221.5 183 61.2
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.4e-56 221.5 183 61.2
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 5.4e-56 221.5 184 61.4
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 7.1e-56 221.1 183 61.2
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 9.2e-56 220.7 184 62.0
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 9.2e-56 220.7 190 58.9
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 1.2e-55 220.3 184 62.5
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.6e-55 219.9 184 61.4
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.6e-55 219.9 189 61.4
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 1.6e-55 219.9 183 62.3
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 2.1e-55 219.5 188 61.2
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.1e-55 219.5 183 60.7
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.5e-55 218.8 186 61.8
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 4.6e-55 218.4 130 78.5
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 6.0e-55 218.0 196 56.6
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 6.0e-55 218.0 183 60.1
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.0e-54 217.2 187 59.9
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 1.3e-54 216.9 193 58.0
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 2.3e-54 216.1 183 60.1
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 3.0e-54 215.7 169 65.7
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 3.0e-54 215.7 179 63.1
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.9e-54 215.3 190 60.5
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 3.9e-54 215.3 185 56.8
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.1e-54 214.9 183 59.6
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 5.1e-54 214.9 182 59.9
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 8.6e-54 214.2 188 59.6
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.1e-53 213.8 184 56.5
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 1.5e-53 213.4 196 57.1
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 1.5e-53 213.4 185 60.0
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 1.9e-53 213.0 194 59.8
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 2.5e-53 212.6 184 59.8
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 2.5e-53 212.6 189 58.7
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 3.3e-53 212.2 135 72.6
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 5.6e-53 211.5 196 56.1
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 7.3e-53 211.1 140 70.7
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 9.5e-53 210.7 193 56.0
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 1.6e-52 209.9 186 59.1
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.6e-52 209.9 185 58.4
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 1.6e-52 209.9 183 59.0
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 2.1e-52 209.5 184 56.0
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 2.1e-52 209.5 227 52.4
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 2.8e-52 209.1 196 55.6
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 2.8e-52 209.1 139 69.8
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 4.7e-52 208.4 183 60.1
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 4.7e-52 208.4 147 68.0
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 6.2e-52 208.0 142 68.3
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 6.2e-52 208.0 195 55.9
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 8.1e-52 207.6 196 55.6
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 8.1e-52 207.6 184 56.0
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 1.1e-51 207.2 140 67.9
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 1.4e-51 206.8 133 69.9
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 1.4e-51 206.8 193 54.9
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.4e-51 206.8 141 68.1
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 1.8e-51 206.5 187 57.8
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.8e-51 206.5 185 55.7
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 2.4e-51 206.1 189 56.6
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 3.1e-51 205.7 226 50.4
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 5.2e-51 204.9 197 55.3
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 6.8e-51 204.5 167 59.9
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.5e-50 203.4 187 57.8
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 2.0e-50 203.0 199 54.3
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 2.0e-50 203.0 186 56.5
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 3.4e-50 202.2 183 56.3
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 1.3e-49 200.3 190 54.2
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.7e-49 199.9 184 55.4
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 2.2e-49 199.5 189 56.6
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 2.9e-49 199.1 194 56.7
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 3.8e-49 198.7 140 68.6
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 8.4e-49 197.6 142 66.9
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 1.1e-48 197.2 193 54.9
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 1.9e-48 196.4 158 60.1
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 7.1e-48 194.5 196 55.1
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 9.2e-48 194.1 196 53.1
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 9.2e-48 194.1 166 61.4
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 9.2e-48 194.1 247 46.6
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 2.1e-47 193.0 115 73.0
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 4.6e-47 191.8 214 49.5
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 7.8e-47 191.0 129 69.0
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 3.3e-45 185.7 271 42.8
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 4.3e-45 185.3 133 66.9
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 5.6e-45 184.9 117 70.1
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.6e-44 182.2 161 61.5
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 6.2e-44 181.4 183 54.1
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 5.2e-43 178.3 128 64.8
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 9.3e-40 167.5 116 65.5
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 6.0e-39 164.9 118 65.3
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 6.6e-38 161.4 161 54.7
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 1.3e-36 157.1 125 53.6
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 3.6e-36 155.6 145 62.1
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 1.8e-35 153.3 124 56.5
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.5e-34 150.2 87 74.7
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.1e-32 144.1 86 79.1
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.1e-28 129.8 86 67.4
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 1.1e-27 127.5 92 66.3
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.4e-27 127.1 115 61.7
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 2.4e-27 126.3 134 47.0
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 2.4e-27 126.3 72 77.8
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 2.6e-26 122.9 79 64.6
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.1e-24 117.5 131 53.4
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 1.6e-23 113.6 72 65.3
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 5.6e-21 105.1 65 66.2
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 1.3e-20 104.0 113 38.1
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 1.5e-18 97.1 60 68.3
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 2.6e-18 96.3 102 42.2
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 5.3e-11 72.0 86 50.0
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 1.1e-08 64.3 35 80.0
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 9.4e-08 61.2 72 41.7


User provided reference genes

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