Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 0.0e+00 1287.3 719 100.0
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.4e-296 1022.7 722 74.8
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 8.9e-288 993.4 734 71.5
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 6.3e-241 837.8 755 61.2
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 5.0e-238 828.2 753 60.4
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 2.0e-234 816.2 756 59.3
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 1.1e-232 810.4 756 58.9
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 3.8e-230 802.0 756 60.1
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 6.5e-230 801.2 753 59.4
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 8.5e-230 800.8 750 59.2
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 1.4e-229 800.0 791 57.0
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 4.7e-228 795.0 753 60.0
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 3.5e-223 778.9 742 58.0
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 6.1e-220 768.1 756 56.9
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 2.6e-218 762.7 755 55.5
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 4.8e-209 731.9 760 53.6
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 1.2e-207 727.2 765 53.9
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 1.6e-207 726.9 750 53.5
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 1.5e-205 720.3 752 53.2
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 5.7e-202 708.4 723 53.5
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 3.7e-201 705.7 773 51.4
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 8.3e-201 704.5 753 52.2
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 1.8e-200 703.4 745 52.3
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 4.1e-200 702.2 770 51.3
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 4.5e-199 698.7 770 52.1
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 5.9e-199 698.4 745 52.2
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.8e-198 695.7 747 51.5
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 3.3e-197 692.6 764 52.5
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 4.2e-197 692.2 758 52.4
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 4.2e-197 692.2 674 58.6
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 5.5e-197 691.8 745 52.1
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 2.1e-196 689.9 768 50.4
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.0e-195 687.6 769 50.1
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.0e-195 687.6 769 50.1
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 3.0e-195 686.0 766 50.8
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 3.0e-195 686.0 764 51.8
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 8.9e-195 684.5 757 49.7
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 8.9e-195 684.5 760 50.7
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 2.0e-194 683.3 737 52.8
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 5.7e-194 681.8 761 50.1
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.3e-193 680.6 764 52.6
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 2.2e-193 679.9 753 51.0
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 7.0e-192 674.9 750 50.9
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 6.6e-190 668.3 754 50.8
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 4.3e-189 665.6 753 51.5
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 4.3e-189 665.6 776 49.7
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 4.7e-188 662.1 747 51.0
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 8.0e-188 661.4 760 50.5
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 2.3e-187 659.8 771 48.1
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 5.8e-186 655.2 768 48.3
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 2.2e-185 653.3 769 48.5
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 8.3e-185 651.4 756 49.1
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 1.9e-184 650.2 759 50.1
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 3.2e-184 649.4 738 48.9
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 2.3e-179 633.3 755 48.6
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 5.2e-179 632.1 731 49.1
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 6.8e-179 631.7 751 48.2
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 5.8e-178 628.6 726 51.1
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 4.1e-176 622.5 768 47.8
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 9.2e-176 621.3 749 47.4
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 3.0e-174 616.3 767 48.0
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 8.6e-174 614.8 745 46.4
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.1e-173 614.4 768 47.4
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 2.5e-173 613.2 774 45.7
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 6.2e-172 608.6 788 45.4
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 8.1e-172 608.2 766 46.1
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 2.3e-171 606.7 747 46.6
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 1.2e-170 604.4 740 47.7
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 1.2e-170 604.4 712 48.0
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 7.6e-170 601.7 654 54.9
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 3.7e-169 599.4 763 46.8
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 7.8e-167 591.7 740 47.3
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 7.8e-167 591.7 752 45.7
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 1.7e-166 590.5 768 46.2
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 3.9e-166 589.3 754 47.9
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 6.6e-166 588.6 768 45.8
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 1.1e-165 587.8 768 46.1
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 3.3e-165 586.3 762 45.8
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 7.3e-165 585.1 759 46.4
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 9.6e-165 584.7 754 45.1
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 2.8e-164 583.2 744 45.2
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 2.4e-163 580.1 753 44.9
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 4.0e-163 579.3 761 45.7
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 4.4e-162 575.9 754 43.4
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 3.8e-161 572.8 755 44.8
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 8.4e-161 571.6 765 44.2
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 1.1e-160 571.2 755 44.4
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 1.9e-160 570.5 729 44.3
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 3.2e-160 569.7 756 44.0
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 1.2e-159 567.8 755 44.4
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 7.8e-159 565.1 759 43.9
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 7.8e-159 565.1 741 49.3
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 1.5e-157 560.8 798 42.6
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 9.6e-157 558.1 757 44.3
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 1.6e-156 557.4 662 48.8
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 8.1e-156 555.1 749 44.5
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 5.3e-155 552.4 739 49.1
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 6.9e-155 552.0 749 44.5
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 5.8e-154 548.9 658 49.1
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 2.9e-153 546.6 742 43.7
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 2.1e-151 540.4 757 43.2
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 2.3e-150 537.0 714 45.0
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 3.3e-149 533.1 733 42.7
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 3.3e-149 533.1 663 45.7
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 1.5e-146 524.2 737 42.9
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 2.9e-145 520.0 714 43.8
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 8.4e-145 518.5 663 44.9
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 7.1e-144 515.4 665 46.9
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 3.5e-143 513.1 835 40.2
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 2.4e-139 500.4 638 46.4
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 6.9e-131 472.2 775 40.1
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 2.3e-126 457.2 675 41.3
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 3.1e-123 446.8 572 47.4
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.6e-122 443.7 712 39.2
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.5e-117 427.9 474 49.8
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 4.3e-117 426.4 846 33.1
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.3e-108 398.3 757 36.2
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 4.8e-108 396.4 761 36.1
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.1e-107 395.2 769 36.2
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 5.5e-104 382.9 750 33.7
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 2.0e-82 311.2 489 36.6
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.5e-80 304.3 483 37.5
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.7e-73 281.6 648 30.6
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 6.2e-71 273.1 460 35.2
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 6.2e-63 246.5 477 35.4
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 1.1e-56 225.7 182 62.1
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 7.6e-53 213.0 714 26.1
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.4e-43 182.2 127 67.7
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.9e-43 181.8 222 41.0
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 6.9e-38 163.3 135 57.0
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.2e-36 158.3 205 45.4
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 3.8e-36 157.5 112 65.2
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 4.9e-36 157.1 98 76.5
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.5e-32 144.8 95 68.4
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 3.1e-30 137.9 345 31.3
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 2.6e-29 134.8 94 67.0
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 1.1e-24 119.4 73 79.5
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.8e-22 112.1 148 43.9
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 1.0e-20 106.3 95 53.7
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 9.3e-19 99.8 95 62.1
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 7.6e-13 80.1 110 42.7
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 7.6e-13 80.1 133 40.6
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 2.9e-12 78.2 111 43.2
Actinidia26141 Actinidia chinensis HOM05D001439 ORTHO05D002726 6.3e-07 60.5 187 33.2
CSS0043150 Camellia sinensis var. sinensis HOM05D001439 ORTHO05D002726 8.2e-07 60.1 128 38.3
Dinv17354 Davidia involucrata HOM05D001439 ORTHO05D002726 2.4e-06 58.5 95 41.1
Nitab4.5_0000621g0070 Nicotiana tabacum HOM05D001439 ORTHO05D002726 3.1e-06 58.2 138 34.1
TAR626G0101 Trochodendron aralioides HOM05D001439 ORTHO05D002726 3.1e-06 58.2 114 36.8
Nn1g06413 Nelumbo nucifera HOM05D001439 ORTHO05D002726 5.3e-06 57.4 94 43.6
MSTRG.9529 Avicennia marina HOM05D001439 ORTHO05D007599 6.9e-06 57.0 70 48.6
Mapoly0005s0159 Marchantia polymorpha HOM05D001439 ORTHO05D002726 6.9e-06 57.0 76 46.1
CiPaw.03G181600 Carya illinoinensis HOM05D001439 ORTHO05D002726 9.1e-06 56.6 94 40.4
CBR_g17700 Chara braunii HOM05D001439 ORTHO05D000002 9.1e-06 56.6 100 36.0
SEGI_36901 Sequoiadendron giganteum HOM05D001312 ORTHO05D001832 9.1e-06 56.6 177 32.2


User provided reference genes

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