Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 2.7e-233 811.6 404 100.0
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 3.4e-127 459.1 332 76.8
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 9.9e-119 431.0 413 57.9
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 1.0e-99 367.9 389 55.3
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 4.1e-56 223.0 384 39.8
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 5.2e-43 179.5 391 35.0
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 9.8e-42 175.3 381 34.6
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 8.6e-38 162.2 381 34.4
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 8.3e-33 145.6 245 40.0
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 3.5e-31 140.2 131 50.4
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 3.9e-30 136.7 146 46.6
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.1e-29 135.2 123 54.5
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 4.0e-27 126.7 358 29.3
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 6.8e-27 125.9 107 51.4
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 7.5e-26 122.5 403 30.0
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 9.9e-26 122.1 108 49.1
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 6.4e-25 119.4 103 56.3
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 8.3e-25 119.0 144 41.7
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.4e-24 118.2 144 41.7
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 1.9e-24 117.9 251 34.7
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 2.4e-24 117.5 329 30.4
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 4.1e-24 116.7 150 40.7
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 7.1e-24 115.9 127 42.5
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 9.2e-24 115.5 144 40.3
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 9.2e-24 115.5 144 40.3
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 9.2e-24 115.5 305 29.8
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.2e-23 115.2 116 47.4
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 2.7e-23 114.0 148 39.9
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 4.6e-23 113.2 141 42.6
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 7.8e-23 112.5 108 50.9
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 1.0e-22 112.1 114 52.6
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 2.3e-22 110.9 112 48.2
arahy.Tifrunner.gnm1.ann1.3CVD71 Arachis hypogaea HOM05D024686 ORTHO05D003486 5.1e-22 109.8 144 40.3
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 5.1e-22 109.8 296 27.0
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 6.6e-22 109.4 107 49.5
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 8.6e-22 109.0 106 49.1
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 1.1e-21 108.6 107 45.8
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.1e-21 108.6 366 26.0
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 1.5e-21 108.2 139 40.3
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.5e-21 107.5 113 48.7
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 1.6e-20 104.8 105 50.5
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 2.1e-20 104.4 121 43.8
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 2.8e-20 104.0 119 47.1
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.7e-20 103.2 165 38.8
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 8.1e-20 102.4 109 42.2
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 2.4e-19 100.9 121 38.8
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 4.0e-19 100.1 165 37.6
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 5.2e-19 99.8 113 43.4
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 6.8e-19 99.4 114 42.1
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 6.8e-19 99.4 113 46.0
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 8.9e-19 99.0 108 45.4
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 8.9e-19 99.0 113 42.5
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.5e-18 98.2 165 37.0
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.5e-18 98.2 148 36.5
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 2.6e-18 97.4 109 44.0
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 3.4e-18 97.1 173 34.7
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 5.8e-18 96.3 324 25.9
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 5.8e-18 96.3 98 45.9
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 7.6e-18 95.9 110 42.7
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 7.6e-18 95.9 108 45.4
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 9.9e-18 95.5 104 44.2
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 9.9e-18 95.5 153 35.3
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 1.7e-17 94.7 114 38.6
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 2.2e-17 94.4 102 42.2
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 2.9e-17 94.0 107 45.8
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 3.8e-17 93.6 103 40.8
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 4.9e-17 93.2 97 49.5
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 8.4e-17 92.4 195 32.3
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.1e-16 92.0 121 38.8
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 1.4e-16 91.7 117 39.3
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 1.4e-16 91.7 128 39.1
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 1.4e-16 91.7 102 41.2
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.9e-16 91.3 125 39.2
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 1.9e-16 91.3 102 41.2
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 3.2e-16 90.5 162 33.3
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 3.2e-16 90.5 108 39.8
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 4.2e-16 90.1 86 46.5
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 5.4e-16 89.7 92 43.5
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 7.1e-16 89.4 326 27.9
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.2e-15 88.6 131 39.7
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.6e-15 88.2 108 42.6
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 2.7e-15 87.4 108 42.6
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 2.7e-15 87.4 111 41.4
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 2.7e-15 87.4 107 42.1
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 3.5e-15 87.0 108 38.9
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 3.5e-15 87.0 107 41.1
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 4.6e-15 86.7 116 38.8
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.6e-15 86.7 103 39.8
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.0e-14 85.5 111 39.6
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 1.3e-14 85.1 108 38.0
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 1.3e-14 85.1 87 47.1
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.7e-14 84.7 99 45.5
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 2.3e-14 84.3 104 37.5
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 3.0e-14 84.0 149 36.9
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 3.0e-14 84.0 106 43.4
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.9e-14 83.6 162 33.3
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 3.9e-14 83.6 368 27.4
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 5.1e-14 83.2 92 42.4
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 5.1e-14 83.2 93 44.1
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 5.1e-14 83.2 109 40.4
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 6.6e-14 82.8 108 40.7
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 1.1e-13 82.0 99 43.4
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 1.5e-13 81.6 99 38.4
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.5e-13 81.6 127 33.9
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 1.5e-13 81.6 116 37.1
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 1.9e-13 81.3 74 47.3
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 2.5e-13 80.9 154 30.5
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 4.3e-13 80.1 120 32.5
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 4.3e-13 80.1 105 38.1
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 5.6e-13 79.7 124 33.9
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 7.3e-13 79.3 130 38.5
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 7.3e-13 79.3 102 36.3
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 9.6e-13 79.0 99 40.4
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 9.6e-13 79.0 107 36.4
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 9.6e-13 79.0 107 36.4
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.2e-12 78.6 105 41.0
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 1.2e-12 78.6 101 37.6
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.6e-12 78.2 99 40.4
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 1.6e-12 78.2 119 37.0
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 2.1e-12 77.8 106 36.8
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 2.1e-12 77.8 105 36.2
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 2.8e-12 77.4 86 48.8
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 2.8e-12 77.4 105 36.2
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 2.8e-12 77.4 317 23.3
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 3.6e-12 77.0 372 21.8
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 3.6e-12 77.0 99 37.4
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 4.7e-12 76.6 105 39.0
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 8.1e-12 75.9 107 33.6
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 1.1e-11 75.5 106 35.8
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 2.4e-11 74.3 89 43.8
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 4.0e-11 73.6 106 39.6
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 5.3e-11 73.2 132 31.1
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 5.3e-11 73.2 105 37.1
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 5.3e-11 73.2 132 31.1
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 5.3e-11 73.2 54 57.4
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 6.9e-11 72.8 132 31.8
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 6.9e-11 72.8 106 36.8
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 9.0e-11 72.4 105 37.1
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 9.0e-11 72.4 99 38.4
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 9.0e-11 72.4 309 24.3
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 9.0e-11 72.4 329 24.9
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 1.2e-10 72.0 111 35.1
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 3.4e-10 70.5 94 35.1
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 3.4e-10 70.5 114 35.1
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 4.4e-10 70.1 104 36.5
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 4.4e-10 70.1 102 38.2
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 4.4e-10 70.1 105 37.1
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 4.4e-10 70.1 102 38.2
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 4.4e-10 70.1 112 32.1
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 4.4e-10 70.1 99 38.4
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 7.6e-10 69.3 104 36.5
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 7.6e-10 69.3 108 34.3
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 7.6e-10 69.3 107 31.8
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 7.6e-10 69.3 101 36.6
ECA246G0424 Erigeron canadensis HOM05D006236 ORTHO05D003486 1.3e-09 68.6 300 24.0
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.7e-09 68.2 100 33.0
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.7e-09 68.2 142 28.2
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 1.7e-09 68.2 122 30.3
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 2.2e-09 67.8 89 40.4
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 2.9e-09 67.4 218 26.6
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 3.8e-09 67.0 208 26.0
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 4.9e-09 66.6 101 38.6
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 6.4e-09 66.2 108 31.5
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 8.4e-09 65.9 105 32.4
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.1e-08 65.5 89 39.3
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.4e-08 65.1 97 37.1
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 5.4e-08 63.2 108 29.6
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 5.4e-08 63.2 108 29.6
Lalb_Chr11g0068791 Lupinus albus HOM05D006236 ORTHO05D003486 1.2e-07 62.0 203 28.1
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 1.2e-07 62.0 98 34.7
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 2.7e-07 60.8 195 26.2
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 2.7e-07 60.8 108 28.7
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.7e-07 60.8 87 36.8
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.7e-07 60.8 87 36.8
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 3.5e-07 60.5 108 28.7
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 3.5e-07 60.5 108 28.7
Ciclev10003901m.g Citrus clementina HOM05D006236 ORTHO05D003486 7.8e-07 59.3 86 39.5
SEGI_27702 Sequoiadendron giganteum HOM05D002377 ORTHO05D003486 1.3e-06 58.5 88 37.5
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 1.7e-06 58.2 116 30.2
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 1.7e-06 58.2 291 26.1
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 3.0e-06 57.4 105 31.4
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 3.9e-06 57.0 307 23.8
unitig_899.g14422 Utricularia gibba HOM05D006236 ORTHO05D003486 3.9e-06 57.0 90 34.4


User provided reference genes

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