Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 1.5e-71 272.7 136 100.0
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 1.7e-70 269.2 136 98.5
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 2.2e-70 268.9 136 97.8
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 2.2e-70 268.9 136 97.8
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 2.9e-70 268.5 136 97.1
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 3.7e-70 268.1 136 97.8
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 1.6e-68 262.7 136 94.9
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 4.6e-68 261.2 136 94.1
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 4.6e-68 261.2 136 94.1
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 4.6e-68 261.2 136 93.4
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 6.0e-68 260.8 136 93.4
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.0e-67 260.0 136 93.4
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.3e-67 259.6 136 93.4
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 2.3e-67 258.8 136 92.6
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 5.1e-67 257.7 136 91.9
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 5.1e-67 257.7 136 91.9
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 5.1e-67 257.7 136 92.6
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 6.6e-67 257.3 136 92.6
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 8.6e-67 256.9 136 92.6
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 8.6e-67 256.9 136 92.6
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 8.6e-67 256.9 136 90.4
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 8.6e-67 256.9 136 92.6
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.1e-66 256.5 136 92.6
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.1e-66 256.5 136 92.6
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 1.1e-66 256.5 136 92.6
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.1e-66 256.5 136 90.4
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 1.1e-66 256.5 137 93.4
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.9e-66 255.8 136 91.9
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.5e-66 255.4 136 91.2
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 4.3e-66 254.6 136 91.9
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 5.6e-66 254.2 136 91.2
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 9.5e-66 253.4 137 93.4
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.2e-65 253.1 136 91.2
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 1.6e-65 252.7 136 90.4
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.6e-65 252.7 136 91.9
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.1e-65 252.3 136 89.0
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 2.1e-65 252.3 136 90.4
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 4.7e-65 251.1 136 89.7
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 4.7e-65 251.1 136 90.4
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 8.1e-65 250.4 136 90.4
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 1.1e-64 250.0 136 88.2
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 1.8e-64 249.2 136 88.2
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 1.8e-64 249.2 136 87.5
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.0e-64 248.1 136 89.7
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 5.2e-64 247.7 136 89.0
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 8.9e-64 246.9 136 86.0
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.2e-63 246.5 138 89.1
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 2.6e-63 245.4 136 87.5
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.4e-63 245.0 136 87.5
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 3.4e-63 245.0 138 88.4
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 3.4e-63 245.0 138 88.4
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 4.4e-63 244.6 136 85.3
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 7.6e-63 243.8 169 77.5
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 9.9e-63 243.4 136 91.9
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 1.3e-62 243.0 136 86.0
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 2.2e-62 242.3 149 82.6
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 2.2e-62 242.3 136 86.0
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 2.9e-62 241.9 136 86.8
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 2.9e-62 241.9 136 86.8
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.9e-61 239.2 136 87.5
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.1e-61 238.0 159 77.4
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 4.1e-61 238.0 136 86.0
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 4.1e-61 238.0 137 86.9
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 7.1e-61 237.3 136 86.8
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 1.2e-60 236.5 137 83.9
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 3.0e-59 231.9 153 76.5
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 6.6e-59 230.7 172 69.2
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 6.6e-59 230.7 136 80.9
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 8.7e-59 230.3 148 78.4
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 2.5e-58 228.8 189 67.2
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 2.8e-57 225.3 136 77.2
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 3.6e-57 224.9 139 81.3
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 1.1e-56 223.4 136 75.7
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 1.8e-56 222.6 136 76.5
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.2e-53 211.8 120 87.5
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 1.1e-50 203.4 136 76.5
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 2.8e-49 198.7 105 91.4
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 4.8e-49 198.0 117 80.3
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 4.0e-48 194.9 124 79.0
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 1.2e-47 193.4 136 76.5
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 2.6e-47 192.2 169 64.5
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 7.6e-47 190.7 136 74.3
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 1.3e-46 189.9 105 85.7
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 3.8e-46 188.3 105 85.7
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 1.2e-44 183.3 138 72.5
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 1.2e-44 183.3 156 66.0
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.2e-44 183.3 136 72.1
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 7.4e-42 174.1 136 68.4
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 1.6e-41 172.9 106 80.2
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 2.0e-39 166.0 136 64.7
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 2.4e-37 159.1 136 61.8
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 2.1e-36 156.0 80 93.8
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 2.3e-35 152.5 80 92.5
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 2.3e-35 152.5 142 49.3
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 3.0e-35 152.1 77 97.4
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 5.1e-35 151.4 77 97.4
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 5.1e-35 151.4 77 97.4
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 5.1e-35 151.4 77 97.4
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.1e-34 150.2 77 96.1
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 1.6e-33 146.4 82 86.6
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 1.6e-33 146.4 82 86.6
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 2.8e-33 145.6 77 90.9
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 2.8e-33 145.6 77 92.2
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 2.8e-33 145.6 77 92.2
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 3.7e-33 145.2 77 90.9
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 4.8e-33 144.8 136 51.5
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 4.8e-33 144.8 77 92.2
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 4.8e-33 144.8 77 92.2
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 6.2e-33 144.4 77 90.9
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 8.2e-33 144.1 86 83.7
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 1.1e-32 143.7 81 86.4
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 1.8e-32 142.9 80 87.5
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 1.8e-32 142.9 80 87.5
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 1.8e-32 142.9 80 87.5
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 1.8e-32 142.9 77 90.9
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 1.8e-32 142.9 77 90.9
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 2.4e-32 142.5 77 90.9
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 5.3e-32 141.4 82 82.9
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 9.0e-32 140.6 128 50.8
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 2.0e-31 139.4 82 80.5
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 2.6e-31 139.0 82 82.9
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 5.8e-31 137.9 77 85.7
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 2.2e-30 136.0 156 48.1
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.9e-30 135.6 77 84.4
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 6.5e-30 134.4 77 83.1
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 8.4e-30 134.0 81 76.5
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 1.1e-29 133.7 77 81.8
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 1.4e-29 133.3 77 79.2
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.4e-29 133.3 77 81.8
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.4e-29 133.3 77 80.5
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 1.9e-29 132.9 77 83.1
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 3.2e-29 132.1 77 81.8
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 3.2e-29 132.1 87 74.7
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 2.1e-28 129.4 76 81.6
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 7.9e-28 127.5 75 81.3
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 6.7e-27 124.4 74 78.4
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 1.5e-26 123.2 126 54.0
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.5e-26 122.5 60 96.7
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 4.3e-26 121.7 60 95.0
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 8.2e-25 117.5 56 100.0
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 8.2e-25 117.5 56 100.0
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 1.1e-24 117.1 115 58.3
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 1.8e-24 116.3 56 96.4
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 2.4e-24 115.9 56 96.4
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 3.1e-24 115.5 56 98.2
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 3.1e-24 115.5 56 98.2
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 3.1e-24 115.5 110 59.1
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 1.5e-23 113.2 56 96.4
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 4.5e-23 111.7 56 94.6
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 5.9e-23 111.3 56 96.4
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 1.0e-22 110.5 57 93.0
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 1.6e-20 103.2 75 58.7
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 3.6e-20 102.1 56 85.7
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 4.8e-17 91.7 50 86.0
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 3.4e-15 85.5 44 88.6
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 7.7e-15 84.3 45 88.9
Haze_26443 Corylus avellana HOM05D000849 ORTHO05D005360 4.2e-13 78.6 126 37.3
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 5.7e-10 68.2 41 82.9
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 1.5e-07 60.1 29 96.6
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 7.7e-07 57.8 138 25.4
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 1.0e-06 57.4 135 25.2
Cpa.g.c40005 Carica papaya HOM05D004554 ORTHO05D005360 2.9e-06 55.8 25 96.0


User provided reference genes

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