Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 7.3e-136 487.3 252 100.0
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 1.2e-114 416.8 252 87.7
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 1.8e-110 402.9 252 84.1
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 1.6e-106 389.8 252 83.3
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 8.7e-89 330.9 255 71.0
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 2.4e-86 322.8 254 71.7
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 2.0e-85 319.7 254 69.3
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 8.4e-84 314.3 258 68.6
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 9.3e-83 310.8 258 67.4
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 2.7e-82 309.3 258 67.4
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 4.6e-82 308.5 258 67.1
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 7.9e-82 307.8 256 68.8
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 2.5e-75 286.2 241 65.6
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 6.1e-74 281.6 232 66.4
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 1.8e-73 280.0 252 62.7
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 8.8e-73 277.7 195 73.8
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 8.8e-73 277.7 196 73.0
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 1.1e-72 277.3 203 71.9
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.5e-72 276.9 250 63.6
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 7.4e-72 274.6 195 72.3
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 1.3e-71 273.9 251 60.6
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 4.8e-71 271.9 196 70.9
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 4.8e-71 271.9 226 67.3
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 6.3e-71 271.6 246 60.6
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 6.3e-71 271.6 219 66.2
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 6.3e-71 271.6 192 74.5
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 8.2e-71 271.2 163 81.6
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 1.1e-70 270.8 223 64.6
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 1.4e-70 270.4 240 61.7
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 1.8e-70 270.0 250 62.8
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 2.4e-70 269.6 195 71.8
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.4e-70 269.6 205 68.3
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 3.1e-70 269.2 274 55.8
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 9.1e-70 267.7 205 69.3
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 2.0e-69 266.5 199 66.8
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 2.0e-69 266.5 160 81.2
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 2.0e-69 266.5 192 72.4
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 3.4e-69 265.8 198 71.7
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 4.5e-69 265.4 222 64.4
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 5.9e-69 265.0 246 58.1
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 1.0e-68 264.2 197 69.0
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 1.3e-68 263.8 206 67.5
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 2.2e-68 263.1 258 60.9
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 5.0e-68 261.9 204 64.7
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 6.5e-68 261.5 233 59.2
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 6.5e-68 261.5 245 57.6
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 8.5e-68 261.2 204 65.2
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 8.5e-68 261.2 260 60.4
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 8.5e-68 261.2 191 68.1
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 1.4e-67 260.4 204 64.2
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 2.5e-67 259.6 163 78.5
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 3.2e-67 259.2 203 65.5
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 3.2e-67 259.2 204 63.7
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 3.2e-67 259.2 222 63.5
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 3.2e-67 259.2 246 57.3
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 4.2e-67 258.8 207 66.7
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 5.5e-67 258.5 199 68.3
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 1.2e-66 257.3 245 58.0
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 1.6e-66 256.9 199 66.3
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 1.6e-66 256.9 204 63.7
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 6.1e-66 255.0 269 55.8
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 1.0e-65 254.2 223 59.6
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 1.4e-65 253.8 224 59.8
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 1.4e-65 253.8 224 59.8
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 1.4e-65 253.8 224 59.8
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 1.8e-65 253.4 223 60.5
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 1.8e-65 253.4 223 59.6
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 2.3e-65 253.1 190 67.4
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 2.3e-65 253.1 193 68.9
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 3.9e-65 252.3 237 57.8
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 3.9e-65 252.3 226 61.5
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 5.1e-65 251.9 226 59.3
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 8.8e-65 251.1 204 63.7
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 2.0e-64 250.0 230 57.4
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 2.0e-64 250.0 220 60.0
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 4.4e-64 248.8 196 65.8
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 7.4e-64 248.1 160 77.5
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 1.7e-63 246.9 213 59.6
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 2.8e-63 246.1 216 60.2
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 4.8e-63 245.4 157 76.4
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 6.3e-63 245.0 196 65.8
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 8.2e-63 244.6 260 52.7
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 2.4e-62 243.0 232 58.6
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 1.2e-61 240.7 161 71.4
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 2.2e-60 236.5 161 70.2
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 6.5e-60 235.0 166 74.7
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 1.1e-59 234.2 224 58.5
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 1.9e-59 233.4 160 71.2
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 7.2e-59 231.5 157 72.0
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.6e-58 230.3 236 55.9
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 2.7e-58 229.6 163 69.3
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 6.1e-58 228.4 193 60.6
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.8e-57 226.9 250 56.4
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 1.8e-57 226.9 193 60.1
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 3.0e-57 226.1 258 52.7
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 6.7e-57 224.9 207 56.5
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 2.0e-56 223.4 159 70.4
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 4.4e-56 222.2 137 78.1
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 2.8e-55 219.5 212 55.7
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 5.3e-54 215.3 240 51.2
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 3.0e-49 199.5 190 55.3
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 5.2e-49 198.7 186 55.9
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 3.1e-46 189.5 185 54.1
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 9.1e-46 188.0 194 56.7
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 9.4e-43 177.9 167 59.3
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 1.2e-40 171.0 169 60.9
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 4.8e-39 165.6 93 90.3
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 6.3e-39 165.2 159 49.7
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 1.4e-38 164.1 158 53.2
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 3.1e-38 162.9 219 47.0
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 4.5e-37 159.1 219 46.1
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 3.8e-36 156.0 173 56.6
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 3.8e-36 156.0 151 60.9
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 5.0e-36 155.6 172 56.4
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 2.8e-34 149.8 82 86.6
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 3.7e-31 139.4 92 75.0
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 6.3e-31 138.7 187 41.7
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 6.3e-31 138.7 158 44.9
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 1.1e-30 137.9 164 43.9
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 1.0e-28 131.3 119 60.5
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 7.5e-24 115.2 136 40.4
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 1.3e-23 114.4 124 53.2
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 1.7e-23 114.0 146 49.3
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 4.1e-22 109.4 69 73.9
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 1.2e-21 107.8 96 56.2
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 2.4e-14 83.6 128 37.5
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 3.2e-14 83.2 118 44.1
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 6.0e-13 79.0 95 49.5
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 7.3e-11 72.0 118 39.0
arahy.Tifrunner.gnm1.ann1.DSS8KU Arachis hypogaea HOM05D006319 ORTHO05D007963 2.6e-08 63.5 114 43.0
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.7e-07 60.8 88 44.3
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 4.9e-07 59.3 91 44.0
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 6.4e-07 58.9 177 27.1
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 6.4e-07 58.9 177 27.1


User provided reference genes

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