Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 6.1e-47 190.7 109 100.0
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 8.6e-25 117.1 78 93.6
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 9.2e-19 97.1 77 62.3
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 5.9e-18 94.4 77 59.7
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 5.9e-18 94.4 50 82.0
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 2.3e-17 92.4 50 80.0
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 1.1e-16 90.1 50 82.0
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 3.3e-16 88.6 50 78.0
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.1e-15 85.9 50 76.0
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 2.8e-15 85.5 50 72.0
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 2.8e-15 85.5 50 76.0
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 1.0e-14 83.6 49 75.5
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 2.3e-14 82.4 48 77.1
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 2.3e-14 82.4 50 76.0
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.0e-14 82.0 50 80.0
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 3.0e-14 82.0 51 76.5
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 3.0e-14 82.0 50 72.0
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 6.8e-14 80.9 50 74.0
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 6.8e-14 80.9 50 74.0
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 1.2e-13 80.1 48 75.0
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.0e-13 79.3 50 70.0
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.0e-13 79.3 48 72.9
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.0e-13 79.3 48 72.9
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.0e-13 79.3 48 72.9
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.4e-13 78.6 48 72.9
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.4e-13 78.6 48 72.9
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.4e-13 78.6 48 72.9
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 1.7e-12 76.3 50 70.0
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.1e-11 73.6 50 62.0
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 1.4e-11 73.2 52 67.3
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.2e-11 72.0 50 64.0
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.2e-11 72.0 50 64.0
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.2e-11 72.0 50 64.0
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 3.2e-11 72.0 50 62.0
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 1.2e-10 70.1 51 66.7
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 2.7e-10 68.9 47 66.0
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.7e-10 68.9 47 66.0
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 2.7e-10 68.9 46 69.6
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 3.5e-10 68.6 48 68.8
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 3.5e-10 68.6 46 67.4
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 4.6e-10 68.2 52 63.5
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 6.0e-10 67.8 47 63.8
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 6.0e-10 67.8 50 70.0
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 7.8e-10 67.4 47 66.0
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 1.3e-09 66.6 49 67.3
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 2.3e-09 65.9 50 66.0
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 2.3e-09 65.9 46 69.6
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 1.1e-08 63.5 46 65.2
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 2.5e-08 62.4 50 62.0
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 3.3e-08 62.0 51 60.8
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 5.6e-08 61.2 55 60.0
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.2e-07 60.1 49 61.2
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 2.8e-07 58.9 56 50.0
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 2.8e-07 58.9 56 50.0
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 2.8e-07 58.9 56 50.0
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 2.8e-07 58.9 56 50.0
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 2.8e-07 58.9 56 50.0
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 3.6e-07 58.5 54 50.0
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 3.6e-07 58.5 52 63.5
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 4.7e-07 58.2 56 48.2
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 4.7e-07 58.2 49 59.2
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 6.2e-07 57.8 54 48.1
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 6.2e-07 57.8 46 58.7
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 1.1e-06 57.0 42 61.9
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.4e-06 56.6 49 65.3
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 2.3e-06 55.8 53 49.1
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 2.3e-06 55.8 53 49.1
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 2.3e-06 55.8 49 55.1
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 2.3e-06 55.8 48 52.1
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 3.1e-06 55.5 51 52.9
Migut.H01103 Erythranthe guttata HOM05D004540 ORTHO05D004852 3.1e-06 55.5 55 56.4
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 4.0e-06 55.1 41 56.1
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 4.0e-06 55.1 56 46.4
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 4.0e-06 55.1 41 56.1
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 4.0e-06 55.1 41 56.1
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 4.0e-06 55.1 56 46.4
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 4.0e-06 55.1 46 60.9
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 5.2e-06 54.7 51 54.9
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 8.9e-06 53.9 48 56.2


User provided reference genes

Program Settings