Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G148100 Glycine max HOM05D008370 ORTHO05D009732 1.2e-39 166.0 82 100.0
Glyma.04G217800 Glycine max HOM05D008370 ORTHO05D009732 5.1e-30 134.0 82 87.8
Phvul.009G138200 Phaseolus vulgaris HOM05D008370 ORTHO05D009732 5.8e-26 120.6 82 79.3
Lj1g0003311 Lotus japonicus HOM05D008370 ORTHO05D009732 7.4e-21 103.6 83 67.5
Lj4g0015780 Lotus japonicus HOM05D008370 ORTHO05D009732 1.0e-17 93.2 82 61.0
Glyma.05G186300 Glycine max HOM05D008370 ORTHO05D009732 2.7e-15 85.1 82 57.3
Glyma.08G144800 Glycine max HOM05D008370 ORTHO05D009732 1.1e-13 79.7 81 56.8
TPR.G2226 Trifolium pratense HOM05D008370 ORTHO05D009732 7.4e-13 77.0 84 53.6
arahy.Tifrunner.gnm1.ann1.U48W6H Arachis hypogaea HOM05D008370 ORTHO05D009732 1.3e-12 76.3 84 56.0
Psat7g050080 Pisum sativum HOM05D008370 ORTHO05D009732 4.8e-12 74.3 84 54.8
arahy.Tifrunner.gnm1.ann1.G5B6SC Arachis hypogaea HOM05D008370 ORTHO05D009732 1.4e-11 72.8 78 53.8
arahy.Tifrunner.gnm1.ann1.3XNV5U Arachis hypogaea HOM05D008370 ORTHO05D009732 1.2e-10 69.7 87 52.9
QL06p031379 Quercus lobata HOM05D008370 ORTHO05D009732 1.2e-10 69.7 79 49.4
Phvul.002G267404 Phaseolus vulgaris HOM05D008370 ORTHO05D009732 1.5e-10 69.3 82 51.2
Cfa002786 Carpinus fangiana HOM05D008370 ORTHO05D009732 2.6e-10 68.6 80 53.8
Haze_25084 Corylus avellana HOM05D008370 ORTHO05D009732 2.6e-10 68.6 80 53.8
TPR.G2215 Trifolium pratense HOM05D010746 ORTHO05D009732 2.2e-09 65.5 81 42.0
Dinv05773 Davidia involucrata HOM05D008370 ORTHO05D009732 2.9e-09 65.1 82 50.0
CiPaw.03G131600 Carya illinoinensis HOM05D008370 ORTHO05D009732 5.0e-09 64.3 81 51.9
Medtr8g092320 Medicago truncatula HOM05D008370 ORTHO05D009732 5.0e-09 64.3 90 47.8
Glyma.05G186400 Glycine max HOM05D010746 ORTHO05D009732 6.5e-09 63.9 82 41.5
Psat7g050120 Pisum sativum HOM05D010746 ORTHO05D009732 6.5e-09 63.9 82 40.2
CSS0039971 Camellia sinensis var. sinensis HOM05D008370 ORTHO05D009732 1.1e-08 63.2 84 51.2
Lalb_Chr12g0203411 Lupinus albus HOM05D008370 ORTHO05D009732 1.1e-08 63.2 78 47.4
Phvul.009G138100 Phaseolus vulgaris HOM05D010746 ORTHO05D009732 1.4e-08 62.8 89 43.8
Actinidia01380 Actinidia chinensis HOM05D008370 ORTHO05D009732 1.9e-08 62.4 96 44.8
CiPaw.04G088800 Carya illinoinensis HOM05D008370 ORTHO05D009732 5.5e-08 60.8 79 44.3
Manes.12G145500 Manihot esculenta HOM05D008370 ORTHO05D009732 5.5e-08 60.8 82 45.1
Manes.13G080360 Manihot esculenta HOM05D008370 ORTHO05D009732 7.1e-08 60.5 84 44.0
Actinidia12221 Actinidia chinensis HOM05D008370 ORTHO05D009732 9.3e-08 60.1 88 45.5
CiPaw.04G088900 Carya illinoinensis HOM05D008370 ORTHO05D009732 1.2e-07 59.7 82 46.3
Lj4g0014601 Lotus japonicus HOM05D010746 ORTHO05D009732 1.2e-07 59.7 87 41.4
Thecc.07G145600 Theobroma cacao HOM05D008370 ORTHO05D009732 1.2e-07 59.7 76 44.7
Medtr8g092340 Medicago truncatula HOM05D010746 ORTHO05D009732 1.6e-07 59.3 83 41.0
Lalb_Chr12g0203401 Lupinus albus HOM05D010746 ORTHO05D009732 2.1e-07 58.9 83 41.0
Gohir.A01G042000 Gossypium hirsutum HOM05D008370 ORTHO05D009732 2.7e-07 58.5 84 44.0
Gorai.002G039200 Gossypium raimondii HOM05D008370 ORTHO05D009732 4.6e-07 57.8 84 44.0
Sabra05G0071700 Salix brachista HOM05D008370 ORTHO05D009732 4.6e-07 57.8 83 47.0
Cfa002787 Carpinus fangiana HOM05D008370 ORTHO05D009732 6.1e-07 57.4 83 44.6
Gorai.003G048600 Gossypium raimondii HOM05D008370 ORTHO05D009732 1.0e-06 56.6 84 41.7
Potri.005G087000 Populus trichocarpa HOM05D008370 ORTHO05D009732 1.0e-06 56.6 83 45.8
Thecc.01G117100 Theobroma cacao HOM05D008370 ORTHO05D009732 1.0e-06 56.6 83 41.0
Carub.0008s2558 Capsella rubella HOM05D011349 ORTHO05D013469 1.3e-06 56.2 72 41.7
Eucgr.I00294 Eucalyptus grandis HOM05D008370 ORTHO05D009732 1.3e-06 56.2 81 46.9
Glyma.06G148200 Glycine max HOM05D010746 ORTHO05D009732 1.3e-06 56.2 90 42.2
Lj1g0003131 Lotus japonicus HOM05D010746 ORTHO05D009732 1.3e-06 56.2 93 43.0
Medtr3g095180 Medicago truncatula HOM05D010746 ORTHO05D009732 1.3e-06 56.2 88 40.9
Prupe.6G166000 Prunus persica HOM05D015647 ORTHO05D009732 1.3e-06 56.2 87 43.7
Rhsim08G0004800 Rhododendron simsii HOM05D008370 ORTHO05D009732 1.3e-06 56.2 87 44.8
Atru.chr4.716 Acer truncatum HOM05D008370 ORTHO05D009732 1.8e-06 55.8 88 43.2
arahy.Tifrunner.gnm1.ann1.Z046N5 Arachis hypogaea HOM05D010746 ORTHO05D009732 1.8e-06 55.8 90 41.1
MD01G1015700 Malus domestica HOM05D008370 ORTHO05D009732 1.8e-06 55.8 82 41.5
Potri.007G077300 Populus trichocarpa HOM05D008370 ORTHO05D009732 2.3e-06 55.5 83 45.8
TAR376G0884 Trochodendron aralioides HOM05D008370 ORTHO05D009732 2.3e-06 55.5 83 39.8
Ciclev10026869m.g Citrus clementina HOM05D008370 ORTHO05D009732 3.0e-06 55.1 85 42.4
Gohir.D03G047500 Gossypium hirsutum HOM05D008370 ORTHO05D009732 3.0e-06 55.1 84 41.7
Sabra07G0065300 Salix brachista HOM05D008370 ORTHO05D009732 5.1e-06 54.3 82 43.9
arahy.Tifrunner.gnm1.ann1.Q4N452 Arachis hypogaea HOM05D010746 ORTHO05D009732 6.7e-06 53.9 81 39.5
arahy.Tifrunner.gnm1.ann1.R1SWRL Arachis hypogaea HOM05D010746 ORTHO05D009732 6.7e-06 53.9 81 39.5
COL.COLO4_22370 Corchorus olitorius HOM05D008370 ORTHO05D009732 8.7e-06 53.5 86 41.9
Glyma.04G217600 Glycine max HOM05D010746 ORTHO05D009732 8.7e-06 53.5 90 41.1
Lalb_Chr07g0184691 Lupinus albus HOM05D010746 ORTHO05D009732 8.7e-06 53.5 76 40.8


User provided reference genes

Program Settings