Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 3.8e-129 464.9 249 100.0
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 4.4e-109 398.3 250 81.6
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 5.2e-86 321.6 246 68.3
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 1.0e-81 307.4 245 67.8
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 6.6e-73 278.1 264 60.6
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 8.7e-73 277.7 260 58.5
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 1.6e-71 273.5 253 62.5
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 1.6e-71 273.5 253 62.5
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 1.1e-67 260.8 247 59.5
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 4.2e-67 258.8 265 56.6
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 5.4e-67 258.5 255 59.2
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 1.3e-65 253.8 247 58.3
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 3.3e-64 249.2 247 59.1
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 1.1e-46 191.0 162 60.5
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 1.4e-46 190.7 178 55.1
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 3.1e-46 189.5 171 56.1
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 4.0e-46 189.1 157 58.6
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 4.0e-46 189.1 162 60.5
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 2.0e-45 186.8 177 55.4
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 3.4e-45 186.0 164 56.7
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 5.8e-45 185.3 159 62.3
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 1.0e-44 184.5 166 59.0
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 1.0e-44 184.5 166 59.0
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.2e-44 183.3 175 57.7
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 2.9e-44 183.0 180 55.0
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 8.4e-44 181.4 166 57.2
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 8.4e-44 181.4 166 57.2
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 8.4e-44 181.4 171 56.7
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 1.1e-43 181.0 189 51.3
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 1.1e-43 181.0 167 61.1
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.4e-43 180.6 155 59.4
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.9e-43 180.3 176 51.7
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 3.2e-43 179.5 175 56.6
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 3.2e-43 179.5 175 56.6
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 5.5e-43 178.7 263 43.0
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.2e-42 177.6 168 57.7
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 1.2e-42 177.6 167 56.3
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.7e-42 176.4 169 56.2
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.7e-42 176.4 254 43.7
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 4.6e-42 175.6 250 44.4
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 1.0e-41 174.5 176 53.4
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 1.0e-41 174.5 176 53.4
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 1.3e-41 174.1 161 54.7
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 2.3e-41 173.3 162 54.9
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.3e-41 173.3 265 41.5
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 5.1e-41 172.2 160 57.5
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 6.7e-41 171.8 161 56.5
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.9e-40 170.2 257 43.2
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 2.5e-40 169.9 165 53.9
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 2.5e-40 169.9 169 54.4
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 3.3e-40 169.5 252 40.5
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 4.3e-40 169.1 161 55.3
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 4.3e-40 169.1 161 55.3
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 5.7e-40 168.7 150 57.3
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 7.4e-40 168.3 167 55.1
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 1.6e-39 167.2 153 56.9
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 2.2e-39 166.8 255 41.6
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.2e-39 166.8 175 52.0
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.8e-39 166.4 154 54.5
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 4.8e-39 165.6 171 54.4
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 6.3e-39 165.2 175 51.4
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 2.4e-38 163.3 150 54.7
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 3.1e-38 162.9 179 50.8
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 4.1e-38 162.5 156 52.6
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 5.3e-38 162.2 156 55.8
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 9.0e-38 161.4 180 48.9
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 2.0e-37 160.2 148 58.1
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 2.6e-37 159.8 165 52.7
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.6e-37 159.8 153 56.9
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 2.6e-37 159.8 167 50.3
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 5.9e-37 158.7 244 39.3
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 7.6e-37 158.3 151 53.6
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 7.6e-37 158.3 162 47.5
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 7.6e-37 158.3 153 54.2
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.0e-36 157.9 157 54.1
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 1.3e-36 157.5 180 50.6
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 1.3e-36 157.5 245 40.0
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.3e-36 157.5 153 55.6
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.7e-36 157.1 185 49.2
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 2.9e-36 156.4 167 51.5
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 2.9e-36 156.4 167 51.5
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 3.8e-36 156.0 149 51.0
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 6.5e-36 155.2 155 52.9
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.1e-35 154.5 154 52.6
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 1.4e-35 154.1 165 51.5
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 1.4e-35 154.1 165 51.5
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 1.4e-35 154.1 168 52.4
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.9e-35 153.7 176 46.0
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 3.2e-35 152.9 165 50.9
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 9.4e-35 151.4 168 50.6
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 1.2e-34 151.0 169 49.1
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 2.1e-34 150.2 151 52.3
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 2.1e-34 150.2 151 52.3
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.7e-34 149.8 151 52.3
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 7.9e-34 148.3 181 47.0
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 7.9e-34 148.3 163 50.3
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 1.0e-33 147.9 176 47.2
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 1.4e-33 147.5 156 48.7
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 2.3e-33 146.7 151 51.0
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 6.7e-33 145.2 152 50.7
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 1.1e-32 144.4 166 50.6
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.1e-32 144.4 183 45.9
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.3e-32 142.5 160 49.4
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.3e-32 142.5 160 49.4
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 4.3e-32 142.5 160 49.4
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 1.1e-30 137.9 190 40.5
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 6.9e-30 135.2 158 51.3
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 2.6e-29 133.3 155 45.2
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 4.5e-29 132.5 158 46.2
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 3.8e-28 129.4 191 42.9
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 3.8e-28 129.4 186 41.4
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 1.1e-27 127.9 184 43.5
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 1.4e-27 127.5 163 46.6
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 4.2e-27 125.9 107 55.1
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 7.2e-27 125.2 180 41.7
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.2e-26 124.4 107 55.1
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 1.6e-26 124.0 209 38.3
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.1e-26 123.6 107 54.2
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 2.1e-26 123.6 66 84.8
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 4.7e-26 122.5 182 41.8
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 2.3e-25 120.2 165 42.4
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 3.9e-25 119.4 145 46.2
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 5.1e-25 119.0 178 42.1
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 5.1e-25 119.0 148 41.2
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 6.7e-25 118.6 172 42.4
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 8.8e-25 118.2 169 43.8
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.5e-24 117.5 174 42.0
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 2.0e-24 117.1 209 37.3
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 5.7e-24 115.5 157 43.3
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 9.7e-24 114.8 181 40.9
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 9.7e-24 114.8 204 38.2
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 2.2e-23 113.6 191 39.3
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 2.2e-23 113.6 191 39.3
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 2.8e-23 113.2 169 37.9
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 3.7e-23 112.8 183 39.9
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 6.3e-23 112.1 183 43.2
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 3.1e-22 109.8 189 37.6
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 1.5e-21 107.5 165 38.8
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 2.0e-21 107.1 182 39.0
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 2.0e-21 107.1 167 39.5
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 3.4e-21 106.3 159 40.9
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 4.5e-21 105.9 115 49.6
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 1.0e-20 104.8 169 39.6
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 1.7e-20 104.0 172 39.5
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 5.5e-19 99.0 153 39.9
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 5.5e-19 99.0 156 38.5
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 5.5e-19 99.0 136 44.1
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 9.4e-19 98.2 148 37.2
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 3.6e-18 96.3 101 52.5
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 1.4e-17 94.4 71 69.0
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 4.4e-16 89.4 170 35.9
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 9.7e-16 88.2 165 36.4
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 9.7e-16 88.2 170 35.3
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.2e-15 87.0 164 35.4
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.8e-15 86.7 97 47.4
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 8.2e-15 85.1 192 35.9
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.6e-13 80.1 86 48.8
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 2.9e-12 76.6 173 35.8
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 3.8e-12 76.3 182 31.3
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 1.1e-11 74.7 86 48.8
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 3.6e-10 69.7 100 38.0
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 3.6e-10 69.7 183 29.5
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 4.0e-09 66.2 78 47.4
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 9.7e-08 61.6 159 30.8
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 1.3e-07 61.2 83 36.1


User provided reference genes

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