Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G141000 Glycine max HOM05D004331 ORTHO05D004984 2.6e-168 595.5 306 100.0
Glyma.04G223900 Glycine max HOM05D004331 ORTHO05D004984 1.9e-155 552.7 304 93.4
Phvul.009G042200 Phaseolus vulgaris HOM05D004331 ORTHO05D004984 3.7e-135 485.3 311 81.0
VMungo1309G0248 Vigna mungo HOM05D004331 ORTHO05D004984 7.0e-134 481.1 302 81.5
QL08p065166 Quercus lobata HOM05D004331 ORTHO05D004984 4.3e-115 418.7 256 81.6
Psat5g069640 Pisum sativum HOM05D004331 ORTHO05D004984 1.6e-114 416.8 306 74.8
TWI73G1241 Tripterygium wilfordii HOM05D004331 ORTHO05D004984 1.2e-112 410.6 274 77.7
Medtr3g093690 Medicago truncatula HOM05D004331 ORTHO05D004984 5.8e-112 408.3 318 70.8
Ca_16853_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 9.9e-112 407.5 308 73.4
Ca_29501_v3 Cicer arietinum L. HOM05D004331 ORTHO05D004984 9.9e-112 407.5 308 73.4
TPR.G13966 Trifolium pratense HOM05D004331 ORTHO05D004984 1.7e-111 406.8 269 79.9
MELO3C022105.2 Cucumis melo HOM05D004331 ORTHO05D004984 2.9e-111 406.0 317 68.1
ClCG11G005520 Citrullus lanatus HOM05D004331 ORTHO05D004984 6.4e-111 404.8 312 69.2
Potri.019G062200 Populus trichocarpa HOM05D004331 ORTHO05D004984 1.4e-110 403.7 285 72.6
Haze_17376 Corylus avellana HOM05D004331 ORTHO05D004984 2.4e-110 402.9 287 73.5
Cfa001189 Carpinus fangiana HOM05D004331 ORTHO05D004984 4.2e-110 402.1 287 73.2
CsaV3_5G039270 Cucumis sativus L. HOM05D004331 ORTHO05D004984 2.7e-109 399.4 317 67.5
arahy.Tifrunner.gnm1.ann1.J1TSCZ Arachis hypogaea HOM05D004331 ORTHO05D004984 3.5e-109 399.1 250 78.8
arahy.Tifrunner.gnm1.ann1.M9I45E Arachis hypogaea HOM05D004331 ORTHO05D004984 3.5e-109 399.1 250 78.8
Sed0000286 Sechium edule HOM05D004331 ORTHO05D004984 3.5e-109 399.1 308 71.1
Lalb_Chr11g0067651 Lupinus albus HOM05D004331 ORTHO05D004984 1.7e-108 396.7 297 70.4
MD07G1237400 Malus domestica HOM05D004331 ORTHO05D004984 1.7e-108 396.7 252 77.8
Manes.10G004100 Manihot esculenta HOM05D004331 ORTHO05D004984 1.7e-108 396.7 308 68.2
Lj1g0025811 Lotus japonicus HOM05D004331 ORTHO05D004984 2.3e-108 396.4 311 67.8
Atru.chr12.214 Acer truncatum HOM05D004331 ORTHO05D004984 3.9e-108 395.6 279 73.8
CANSAT56G0386 Cannabis sativa HOM05D004331 ORTHO05D004984 1.9e-107 393.3 288 72.2
MD01G1171000 Malus domestica HOM05D004331 ORTHO05D004984 2.5e-107 392.9 245 80.0
RcHm_v2.0_Chr1g0372681 Rosa chinensis HOM05D004331 ORTHO05D004984 5.6e-107 391.7 293 70.3
FAN06G3213 Fragaria x ananassa HOM05D004331 ORTHO05D004984 2.1e-106 389.8 259 75.7
Ciclev10031884m.g Citrus clementina HOM05D004331 ORTHO05D004984 2.8e-106 389.4 249 78.3
Thhalv10016808m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 2.8e-106 389.4 301 68.1
FvH4_7g26230 Fragaria vesca HOM05D004331 ORTHO05D004984 3.6e-106 389.0 252 76.6
AL4G38690 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 6.2e-106 388.3 297 68.7
Cpa.g.sc19.35 Carica papaya HOM05D004331 ORTHO05D004984 6.2e-106 388.3 259 76.4
THA.LOC104824369 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 1.1e-105 387.5 253 77.1
CARHR135900 Cardamine hirsuta HOM05D004331 ORTHO05D004984 1.4e-105 387.1 292 69.5
Gohir.A10G177400 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.8e-105 386.7 257 75.5
AT2G40800 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.4e-105 386.3 297 68.4
Sc11g0006070 Simmondsia chinensis HOM05D004331 ORTHO05D004984 3.1e-105 386.0 240 76.7
Sabra19G0081100 Salix brachista HOM05D004331 ORTHO05D004984 5.3e-105 385.2 320 64.4
Sabra19G0075700 Salix brachista HOM05D004331 ORTHO05D004984 6.9e-105 384.8 320 64.4
FAN10G3590 Fragaria x ananassa HOM05D004331 ORTHO05D004984 1.2e-104 384.0 252 75.4
TAR636G1774 Trochodendron aralioides HOM05D004331 ORTHO05D004984 1.2e-104 384.0 251 77.3
Gohir.D10G184000 Gossypium hirsutum HOM05D004331 ORTHO05D004984 1.5e-104 383.6 293 68.6
Gorai.011G206200 Gossypium raimondii HOM05D004331 ORTHO05D004984 1.5e-104 383.6 293 68.6
Hma1.2p1_0264F.1_g105850 Hydrangea macrophylla HOM05D004331 ORTHO05D004984 2.0e-104 383.3 319 64.9
Duzib114G0903 Durio zibethinus HOM05D004331 ORTHO05D004984 3.4e-104 382.5 290 70.0
BcaC02g12734 Brassica carinata HOM05D004331 ORTHO05D004984 4.4e-104 382.1 249 75.1
BolC4t21871H Brassica oleracea HOM05D004331 ORTHO05D004984 5.8e-104 381.7 309 66.0
CARHR166560 Cardamine hirsuta HOM05D004331 ORTHO05D004984 5.8e-104 381.7 249 75.1
Thhalv10006036m.g Eutrema salsugineum HOM05D004331 ORTHO05D004984 5.8e-104 381.7 249 75.5
Sp4g23120 Schrenkiella parvula HOM05D004331 ORTHO05D004984 7.6e-104 381.3 296 67.2
A05p01900 Brassica napus HOM05D004331 ORTHO05D004984 9.9e-104 380.9 309 65.7
C04p02240 Brassica napus HOM05D004331 ORTHO05D004984 9.9e-104 380.9 309 65.7
BraA05t19188Z Brassica rapa HOM05D004331 ORTHO05D004984 9.9e-104 380.9 309 65.7
Lalb_Chr08g0239281 Lupinus albus HOM05D004331 ORTHO05D004984 9.9e-104 380.9 310 66.1
Thecc.10G186200 Theobroma cacao HOM05D004331 ORTHO05D004984 9.9e-104 380.9 290 68.6
Carub.0005s2321 Capsella rubella HOM05D004331 ORTHO05D004984 1.3e-103 380.6 249 75.1
Nn5g26801 Nelumbo nucifera HOM05D004331 ORTHO05D004984 1.3e-103 380.6 256 74.2
PGR142G0580 Punica granatum HOM05D004331 ORTHO05D004984 1.7e-103 380.2 302 65.6
AT3G56430 Arabidopsis thaliana HOM05D004331 ORTHO05D004984 2.2e-103 379.8 249 74.3
MSTRG.156 Avicennia marina HOM05D004331 ORTHO05D004984 2.2e-103 379.8 275 72.0
Duzib128G0601 Durio zibethinus HOM05D004331 ORTHO05D004984 2.2e-103 379.8 253 75.1
THA.LOC104814366 Tarenaya hassleriana HOM05D004331 ORTHO05D004984 3.8e-103 379.0 240 77.1
COL.COLO4_19485 Corchorus olitorius HOM05D004331 ORTHO05D004984 4.9e-103 378.6 299 68.2
Aa31LG10G11310 Aethionema arabicum HOM05D004331 ORTHO05D004984 6.4e-103 378.3 265 72.5
AL5G37760 Arabidopsis lyrata HOM05D004331 ORTHO05D004984 6.4e-103 378.3 249 74.7
Dinv34508 Davidia involucrata HOM05D004331 ORTHO05D004984 6.4e-103 378.3 301 67.4
Lj1A969T93 Lonicera japonica HOM05D004331 ORTHO05D004984 6.4e-103 378.3 229 80.8
CSS0028422 Camellia sinensis var. sinensis HOM05D004331 ORTHO05D004984 1.1e-102 377.5 249 73.1
Sp5g06060 Schrenkiella parvula HOM05D004331 ORTHO05D004984 1.4e-102 377.1 250 73.2
Eucgr.L02349 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.9e-102 376.7 240 75.8
A09p49380 Brassica napus HOM05D004331 ORTHO05D004984 3.5e-101 372.5 249 72.7
BraA09t40391Z Brassica rapa HOM05D004331 ORTHO05D004984 3.5e-101 372.5 249 72.7
Actinidia01013 Actinidia chinensis HOM05D004331 ORTHO05D004984 6.0e-101 371.7 276 68.5
ATR1127G084 Amborella trichopoda HOM05D004331 ORTHO05D004984 6.0e-101 371.7 277 70.4
Nitab4.5_0009756g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 7.9e-101 371.3 297 65.3
Lsat_1_v5_gn_2_127600 Lactuca sativa HOM05D004331 ORTHO05D004984 1.3e-100 370.5 248 72.6
Eucgr.G03152 Eucalyptus grandis HOM05D004331 ORTHO05D004984 2.3e-100 369.8 240 74.6
Migut.F00564 Erythranthe guttata HOM05D004331 ORTHO05D004984 3.0e-100 369.4 290 66.2
SalBow3G0869 Salvia bowleyana HOM05D004331 ORTHO05D004984 5.1e-100 368.6 257 72.4
Actinidia07780 Actinidia chinensis HOM05D004331 ORTHO05D004984 6.6e-100 368.2 258 70.9
vmacro09950 Vaccinium macrocarpon HOM05D004331 ORTHO05D004984 6.6e-100 368.2 220 80.9
AUR62032546 Chenopodium quinoa HOM05D004331 ORTHO05D004984 8.7e-100 367.9 238 74.8
EL10Ac2g02684 Beta vulgaris HOM05D004331 ORTHO05D004984 4.3e-99 365.5 230 77.8
PGSC0003DMG400005253 Solanum tuberosum HOM05D004331 ORTHO05D004984 4.3e-99 365.5 243 73.7
Peaxi162Scf00073g02119 Petunia axillaris HOM05D004331 ORTHO05D004984 5.6e-99 365.2 301 63.5
Aqoxy4G03301 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 7.3e-99 364.8 243 74.5
Hund13431 Selenicereus undatus HOM05D004331 ORTHO05D004984 7.3e-99 364.8 239 74.1
Rhsim09G0186700 Rhododendron simsii HOM05D004331 ORTHO05D004984 9.6e-99 364.4 222 79.7
MBI15_g36678_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 1.3e-98 364.0 224 78.6
Sopen03g025450 Solanum pennellii HOM05D004331 ORTHO05D004984 2.8e-98 362.8 243 73.3
DCAR_020157 Daucus carota HOM05D004331 ORTHO05D004984 6.2e-98 361.7 310 61.3
Solyc03g095470.3 Solanum lycopersicum HOM05D004331 ORTHO05D004984 6.2e-98 361.7 243 72.8
CAN.G30.2 Capsicum annuum HOM05D004331 ORTHO05D004984 8.1e-98 361.3 317 62.5
HanXRQChr07g0204811 Helianthus annuus HOM05D004331 ORTHO05D004984 1.1e-97 360.9 284 65.5
SGA_v2.0_scaffold397G50761 Striga asiatica HOM05D004331 ORTHO05D004984 9.0e-97 357.8 304 64.5
unitig_88.g27825 Utricularia gibba HOM05D004331 ORTHO05D004984 9.0e-97 357.8 272 65.1
SEGI_36006 Sequoiadendron giganteum HOM05D004331 ORTHO05D004984 1.3e-95 354.0 227 76.2
BolC8t50795H Brassica oleracea HOM05D004331 ORTHO05D004984 2.2e-95 353.2 214 78.0
HPP92_012570 Vanilla planifolia HOM05D004331 ORTHO05D004984 3.8e-95 352.4 242 70.7
PSO017G4126 Papaver somniferum HOM05D004331 ORTHO05D004984 9.3e-94 347.8 254 68.9
PSO170G2208 Papaver somniferum HOM05D004331 ORTHO05D004984 1.6e-93 347.1 255 67.8
Os01g0168300 Oryza sativa ssp. japonica HOM05D004331 ORTHO05D004984 4.6e-93 345.5 225 74.2
ECA238G1814 Erigeron canadensis HOM05D004331 ORTHO05D004984 1.3e-92 344.0 212 77.4
SGA_v2.0_scaffold60G20876 Striga asiatica HOM05D004331 ORTHO05D004984 1.7e-87 327.0 275 61.5
Dinv21866 Davidia involucrata HOM05D004331 ORTHO05D004984 6.5e-87 325.1 189 82.0
AagrBONN_evm.TU.Sc2ySwM_340.90 Anthoceros agrestis HOM05D004331 ORTHO05D004984 1.1e-83 314.3 236 66.9
GSVIVG01032862001 Vitis vinifera HOM05D004331 ORTHO05D004984 2.5e-83 313.2 178 84.8
BcaC07g39957 Brassica carinata HOM05D004331 ORTHO05D004984 2.1e-82 310.1 289 57.8
Cc02_g05110 Coffea canephora HOM05D004331 ORTHO05D004984 2.6e-80 303.1 177 83.1
FAN01G2544 Fragaria x ananassa HOM05D004331 ORTHO05D004984 2.6e-80 303.1 176 84.7
Pp3c7_18440 Physcomitrium patens HOM05D004331 ORTHO05D004984 3.4e-80 302.8 224 65.6
Mapoly0158s0020 Marchantia polymorpha HOM05D004331 ORTHO05D004984 5.8e-80 302.0 233 63.9
Pp3c1_5190 Physcomitrium patens HOM05D004331 ORTHO05D004984 8.4e-79 298.1 224 64.7
C08p31740 Brassica napus HOM05D004331 ORTHO05D004984 2.5e-78 296.6 289 57.8
Actinidia13632 Actinidia chinensis HOM05D004331 ORTHO05D004984 1.8e-76 290.4 211 70.6
CBR_g29882 Chara braunii HOM05D004331 ORTHO05D004984 1.4e-73 280.8 223 61.4
SMO199G0115 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 3.1e-73 279.6 226 60.2
SMO361G0183 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 5.3e-73 278.9 225 60.0
CiPaw.02G199300 Carya illinoinensis HOM05D004331 ORTHO05D004984 1.7e-71 273.9 247 62.8
Nitab4.5_0018056g0010 Nicotiana tabacum HOM05D004331 ORTHO05D004984 7.9e-69 265.0 239 61.1
Oeu039397.2 Olea europaea HOM05D004331 ORTHO05D004984 1.1e-65 254.6 163 76.1
AUR62030578 Chenopodium quinoa HOM05D004331 ORTHO05D004984 1.3e-63 247.7 146 80.1
Zm00001eb336450 Zea mays HOM05D004331 ORTHO05D004984 1.6e-61 240.7 146 78.8
CiPaw.01G307700 Carya illinoinensis HOM05D004331 ORTHO05D004984 9.7e-59 231.5 130 83.8
Ah.10g029610 Amaranthus hybridus HOM05D000033 ORTHO05D000913 2.9e-55 219.9 127 81.9
Manes.03G048500 Manihot esculenta HOM05D004331 ORTHO05D004984 6.3e-50 202.2 293 45.7
Prupe.2G266500 Prunus persica HOM05D004331 ORTHO05D004984 1.8e-49 200.7 243 49.4
SMO361G0787 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 1.8e-49 200.7 213 46.0
SMO361G0173 Selaginella moellendorffii HOM05D004331 ORTHO05D004984 7.0e-49 198.7 213 45.5
Carub.0004s2310 Capsella rubella HOM05D004331 ORTHO05D004984 3.5e-48 196.4 296 44.6
BcaC09g50388 Brassica carinata HOM05D004331 ORTHO05D004984 2.0e-43 180.6 101 82.2
BcaC04g21857 Brassica carinata HOM05D004331 ORTHO05D004984 2.6e-43 180.3 101 82.2
BcaC09g50949 Brassica carinata HOM05D004331 ORTHO05D004984 2.6e-43 180.3 101 83.2
BolC1t02551H Brassica oleracea HOM05D004331 ORTHO05D004984 9.8e-43 178.3 101 81.2
BcaC02g11378 Brassica carinata HOM05D004331 ORTHO05D004984 2.2e-42 177.2 101 81.2
C04p16400 Brassica napus HOM05D004331 ORTHO05D004984 2.2e-42 177.2 101 81.2
C09p26570 Brassica napus HOM05D004331 ORTHO05D004984 8.3e-42 175.3 101 80.2
BolC9t55553H Brassica oleracea HOM05D004331 ORTHO05D004984 8.3e-42 175.3 101 80.2
C01p26060 Brassica napus HOM05D004331 ORTHO05D004984 1.1e-41 174.9 101 80.2
MSTRG.8387 Avicennia marina HOM05D004331 ORTHO05D004984 1.8e-41 174.1 274 42.3
C01p18940 Brassica napus HOM05D004331 ORTHO05D004984 2.4e-41 173.7 101 79.2
BolC1t01820H Brassica oleracea HOM05D004331 ORTHO05D004984 2.4e-41 173.7 101 79.2
PRCOL_00001688 Prasinoderma coloniale HOM05D004331 ORTHO05D004984 4.5e-40 169.5 234 40.6
Cre05.g232752 Chlamydomonas reinhardtii HOM05D004331 ORTHO05D004984 3.2e-38 163.3 255 35.7
Actinidia31642 Actinidia chinensis HOM05D004331 ORTHO05D004984 3.6e-37 159.8 164 57.3
SHI31864 Sapria himalayana HOM05D004331 ORTHO05D004984 2.8e-34 150.2 91 79.1
BcaC04g23398 Brassica carinata HOM05D004331 ORTHO05D004984 7.2e-30 135.6 101 65.3
CiPaw.01G307900 Carya illinoinensis HOM05D004331 ORTHO05D004984 2.1e-29 134.0 153 55.6
BcaC01g00580 Brassica carinata HOM05D003032 ORTHO05D003456 4.7e-29 132.9 73 87.7
C03p81590 Brassica napus HOM05D004331 ORTHO05D004984 4.7e-29 132.9 73 87.7
BolC3t20429H Brassica oleracea HOM05D004331 ORTHO05D004984 4.7e-29 132.9 73 87.7
HPP92_012539 Vanilla planifolia HOM05D004331 ORTHO05D004984 4.0e-28 129.8 115 58.3
MBI15_g10655_MAGBIO Magnolia biondii HOM05D004331 ORTHO05D004984 5.2e-28 129.4 127 58.3
Ah.10g029620 Amaranthus hybridus HOM05D004331 ORTHO05D004984 7.5e-27 125.6 91 67.0
Eucgr.G03162 Eucalyptus grandis HOM05D004331 ORTHO05D004984 1.3e-26 124.8 141 52.5
AUR62030577 Chenopodium quinoa HOM05D004331 ORTHO05D004984 2.2e-26 124.0 83 73.5
SHI31865 Sapria himalayana HOM05D004331 ORTHO05D004984 2.5e-22 110.5 98 55.1
Zm00001eb123190 Zea mays HOM05D004331 ORTHO05D004984 4.7e-21 106.3 85 62.4
Aqoxy4G02083 Aquilegia oxysepala HOM05D004331 ORTHO05D004984 3.1e-20 103.6 63 74.6
BolC9t53789H Brassica oleracea HOM05D004331 ORTHO05D004984 5.8e-19 99.4 54 85.2
SHI31863 Sapria himalayana HOM05D004331 ORTHO05D004984 1.3e-18 98.2 56 78.6
MCO04G099 Micromonas commoda HOM05D004331 ORTHO05D004984 9.2e-17 92.0 159 32.1
VMungo0540G1227 Vigna mungo HOM05D004331 ORTHO05D004984 1.9e-14 84.3 49 79.6
BraA04t18575Z Brassica rapa HOM05D004331 ORTHO05D016805 3.3e-14 83.6 44 90.9
C08p13890 Brassica napus HOM05D013285 ORTHO05D004984 6.8e-12 75.9 72 61.1
BolC4t28360H Brassica oleracea HOM05D004331 ORTHO05D004984 6.8e-12 75.9 68 58.8


User provided reference genes

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