Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 6.2e-235 817.0 391 100.0
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 1.9e-183 646.0 397 79.3
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 4.4e-164 581.6 395 73.7
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 1.7e-155 553.1 295 90.2
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 6.4e-155 551.2 400 72.5
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 6.4e-155 551.2 393 69.5
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 1.6e-153 546.6 391 69.6
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 1.6e-142 510.0 313 78.3
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 2.3e-136 489.6 439 58.5
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 5.1e-136 488.4 313 73.5
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 7.3e-135 484.6 437 58.1
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 2.0e-132 476.5 457 56.7
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 1.3e-131 473.8 445 57.3
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 5.4e-130 468.4 448 56.2
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 1.2e-129 467.2 441 57.1
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 2.3e-128 463.0 450 56.0
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 3.0e-128 462.6 445 56.6
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 5.6e-127 458.4 423 57.7
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 6.2e-126 454.9 442 55.2
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 2.2e-123 446.4 456 53.9
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 4.9e-123 445.3 448 52.7
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 5.6e-119 431.8 447 52.1
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 1.6e-118 430.3 455 51.0
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 1.6e-118 430.3 443 51.2
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 2.1e-118 429.9 447 52.8
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 1.8e-117 426.8 436 52.3
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 2.4e-117 426.4 400 54.5
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 9.0e-117 424.5 390 57.9
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 2.6e-116 422.9 481 49.1
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 4.5e-116 422.2 466 50.9
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 9.9e-116 421.0 470 49.8
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 7.1e-114 414.8 453 49.9
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 9.3e-114 414.5 451 49.0
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 3.5e-113 412.5 428 51.2
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 3.5e-113 412.5 428 51.2
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.6e-113 412.1 453 49.7
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 7.9e-113 411.4 453 49.4
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 3.9e-112 409.1 448 49.6
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 1.1e-111 407.5 452 48.9
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 1.5e-111 407.1 449 49.0
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 1.5e-111 407.1 433 51.0
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 1.9e-111 406.8 434 52.3
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.9e-111 406.8 452 48.7
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 5.6e-111 405.2 459 47.9
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 5.6e-111 405.2 459 47.9
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 7.4e-111 404.8 348 58.3
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 9.6e-111 404.4 453 49.4
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 9.6e-111 404.4 443 50.8
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 1.6e-110 403.7 452 49.1
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 2.1e-110 403.3 413 51.8
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 2.1e-110 403.3 413 50.8
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 2.8e-110 402.9 447 49.7
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 8.1e-110 401.4 418 52.2
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 1.8e-109 400.2 324 61.1
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 6.9e-109 398.3 413 50.4
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 9.0e-109 397.9 422 52.4
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 9.0e-109 397.9 412 51.7
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 1.2e-108 397.5 368 56.8
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 1.0e-107 394.4 403 49.9
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 1.3e-107 394.0 417 48.7
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 1.7e-107 393.7 421 51.3
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 4.9e-107 392.1 469 46.3
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.5e-107 391.7 445 47.9
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 1.9e-106 390.2 406 49.5
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 1.9e-106 390.2 418 48.6
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 2.5e-103 379.8 467 45.2
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 2.1e-102 376.7 373 53.9
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 4.8e-102 375.6 418 48.1
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 6.3e-102 375.2 432 47.5
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 8.2e-102 374.8 309 63.4
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 1.2e-100 370.9 403 50.1
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 1.3e-99 367.5 405 50.9
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 1.4e-98 364.0 414 49.8
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 1.6e-97 360.5 384 51.8
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 2.1e-97 360.1 358 53.9
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 7.9e-97 358.2 402 50.5
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 1.0e-96 357.8 421 45.6
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 5.1e-96 355.5 417 47.0
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 1.1e-95 354.4 411 46.5
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 3.3e-95 352.8 417 46.3
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 5.7e-95 352.1 413 46.0
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 1.3e-94 350.9 417 46.3
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 1.1e-93 347.8 338 53.3
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 9.0e-93 344.7 409 46.5
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 5.9e-92 342.0 479 42.0
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 1.7e-91 340.5 333 52.9
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 2.2e-91 340.1 412 47.6
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 8.5e-91 338.2 368 49.2
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 3.2e-90 336.3 459 41.6
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 4.2e-90 335.9 416 48.1
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 1.6e-89 334.0 326 56.1
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 2.1e-89 333.6 412 47.8
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 3.9e-88 329.3 414 43.2
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 6.7e-88 328.6 414 47.6
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 8.2e-86 321.6 415 46.7
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 5.3e-85 318.9 302 55.3
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.2e-84 317.8 422 45.7
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 7.7e-84 315.1 421 45.4
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 2.9e-83 313.2 413 46.2
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 2.9e-83 313.2 418 47.1
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 7.9e-81 305.1 412 47.3
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 7.4e-79 298.5 500 40.4
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 1.6e-73 280.8 408 44.6
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 9.7e-71 271.6 278 54.7
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.8e-70 269.2 265 53.2
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 1.7e-67 260.8 291 48.8
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 9.4e-66 255.0 417 37.9
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.0e-64 251.5 313 46.6
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.0e-64 251.5 491 33.2
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.2e-62 243.8 452 34.1
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 2.8e-62 243.4 322 45.0
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 1.4e-61 241.1 262 52.7
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.7e-59 234.2 400 35.0
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 5.5e-58 229.2 491 32.8
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 2.8e-54 216.9 569 29.2
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 3.5e-52 209.9 148 65.5
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 2.9e-51 206.8 234 48.3
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 3.0e-48 196.8 341 38.1
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 8.9e-40 168.7 130 62.3
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 1.2e-39 168.3 227 42.3
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 7.5e-39 165.6 255 39.2
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.7e-38 164.5 207 42.5
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 4.9e-38 162.9 204 41.2
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.9e-37 161.0 144 52.8
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 1.1e-32 145.2 162 47.5
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 4.9e-30 136.3 276 34.1
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 1.6e-25 121.3 115 53.9
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.1e-24 118.6 210 33.8
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 6.8e-24 115.9 94 58.5
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 2.4e-16 90.9 159 39.6
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 3.8e-14 83.6 57 68.4
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 3.6e-09 67.0 141 31.2
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 4.0e-08 63.5 41 68.3
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 3.4e-07 60.5 52 50.0


User provided reference genes

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