Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 1.4e-83 312.8 147 100.0
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 6.0e-82 307.4 147 97.3
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 2.6e-77 292.0 148 91.9
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 9.3e-75 283.5 148 90.5
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 2.7e-74 282.0 147 87.1
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 3.5e-74 281.6 147 89.1
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 1.0e-73 280.0 147 88.4
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.0e-73 280.0 147 89.1
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 3.9e-73 278.1 147 87.8
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 8.7e-73 276.9 147 87.1
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 1.9e-72 275.8 147 86.4
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 4.3e-72 274.6 147 87.8
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 9.6e-72 273.5 148 86.5
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 1.6e-71 272.7 148 86.5
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.8e-71 271.2 148 86.5
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 4.8e-71 271.2 148 86.5
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 8.2e-71 270.4 147 86.4
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 2.4e-70 268.9 147 85.0
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 3.1e-70 268.5 147 83.0
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.0e-70 268.1 148 85.8
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 6.9e-70 267.3 148 85.1
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 6.9e-70 267.3 147 84.4
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 1.2e-69 266.5 147 84.4
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 3.4e-69 265.0 147 85.0
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 3.4e-69 265.0 147 85.0
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 3.4e-69 265.0 145 82.8
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 3.4e-69 265.0 147 84.4
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 1.7e-68 262.7 147 85.0
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.2e-68 262.3 149 84.6
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 3.8e-68 261.5 148 83.8
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 4.9e-68 261.2 147 81.6
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.9e-67 259.2 147 81.6
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 2.5e-67 258.8 141 85.1
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 2.5e-67 258.8 147 83.7
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 3.2e-67 258.5 147 82.3
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 4.2e-67 258.1 147 82.3
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 5.5e-67 257.7 150 80.7
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 7.1e-67 257.3 147 81.0
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 7.1e-67 257.3 147 81.6
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 9.3e-67 256.9 147 83.0
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 1.2e-66 256.5 147 81.0
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.6e-66 256.1 148 81.8
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 3.5e-66 255.0 147 78.2
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 3.5e-66 255.0 147 81.0
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 6.0e-66 254.2 148 80.4
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 7.9e-66 253.8 147 81.6
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 7.9e-66 253.8 147 81.0
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 1.0e-65 253.4 150 80.7
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.3e-65 253.1 147 83.0
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 1.3e-65 253.1 147 79.6
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 1.8e-65 252.7 147 79.6
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.3e-65 252.3 149 79.9
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 2.3e-65 252.3 147 78.9
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 2.3e-65 252.3 147 78.9
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 2.3e-65 252.3 147 78.9
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 3.0e-65 251.9 147 81.6
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 3.9e-65 251.5 147 76.2
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 3.9e-65 251.5 147 77.6
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 5.1e-65 251.1 147 78.2
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 5.1e-65 251.1 147 78.9
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 5.1e-65 251.1 148 82.4
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 5.1e-65 251.1 148 82.4
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 6.7e-65 250.8 149 80.5
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 8.7e-65 250.4 147 78.9
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 8.7e-65 250.4 147 79.6
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 8.7e-65 250.4 147 78.9
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 8.7e-65 250.4 147 78.2
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 1.5e-64 249.6 149 78.5
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.5e-64 249.6 147 78.2
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.5e-64 249.6 147 78.2
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.9e-64 249.2 149 79.2
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 1.9e-64 249.2 145 78.6
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.9e-64 249.2 147 77.6
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 2.5e-64 248.8 149 77.2
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 2.5e-64 248.8 149 81.2
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.5e-64 248.8 147 78.2
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 3.3e-64 248.4 146 77.4
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 3.3e-64 248.4 147 74.8
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 4.3e-64 248.1 147 76.9
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 4.3e-64 248.1 147 78.9
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 4.3e-64 248.1 147 78.2
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 4.3e-64 248.1 149 77.2
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 4.3e-64 248.1 149 82.6
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 7.4e-64 247.3 147 79.6
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.3e-63 246.5 148 79.1
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 1.3e-63 246.5 147 78.2
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 1.6e-63 246.1 148 77.7
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 2.8e-63 245.4 133 85.0
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 2.8e-63 245.4 133 85.0
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 2.8e-63 245.4 148 80.4
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 2.8e-63 245.4 147 76.9
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 3.7e-63 245.0 147 79.6
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 6.3e-63 244.2 147 76.9
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 8.2e-63 243.8 144 76.4
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.1e-62 243.4 131 88.5
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 1.1e-62 243.4 147 76.9
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 1.4e-62 243.0 138 82.6
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 5.3e-62 241.1 147 76.2
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 6.9e-62 240.7 133 83.5
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 1.2e-61 240.0 147 76.9
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.5e-61 239.6 147 78.2
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 1.5e-61 239.6 147 76.2
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.0e-61 239.2 148 77.0
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 2.0e-61 239.2 147 76.2
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 2.6e-61 238.8 147 75.5
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 2.6e-61 238.8 148 77.7
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 7.6e-61 237.3 147 74.1
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 7.6e-61 237.3 151 76.2
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.9e-60 235.3 141 77.3
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 8.5e-60 233.8 148 76.4
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 8.5e-60 233.8 148 76.4
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 1.1e-59 233.4 148 77.0
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 1.1e-59 233.4 148 77.0
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 1.9e-59 232.6 150 74.7
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 1.9e-59 232.6 152 76.3
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 4.2e-59 231.5 148 74.3
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 9.4e-59 230.3 150 72.0
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 9.4e-59 230.3 150 72.0
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.2e-58 229.9 151 76.2
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 4.6e-58 228.0 132 77.3
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 1.4e-57 226.5 140 77.1
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 1.4e-57 226.5 126 81.0
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 3.9e-57 224.9 147 73.5
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 5.1e-57 224.6 150 72.7
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 5.1e-57 224.6 150 72.7
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 5.1e-57 224.6 150 72.7
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 6.7e-57 224.2 150 74.0
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 1.9e-56 222.6 150 72.7
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 2.5e-56 222.2 150 72.7
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 5.7e-56 221.1 147 67.3
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 1.4e-54 216.5 135 77.8
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.8e-54 216.1 133 79.7
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 3.1e-54 215.3 147 70.7
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 6.9e-54 214.2 151 67.5
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 6.9e-54 214.2 147 66.0
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 1.2e-53 213.4 149 70.5
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 1.2e-53 213.4 149 70.5
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 1.2e-53 213.4 149 70.5
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 1.7e-52 209.5 147 69.4
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.2e-52 209.1 118 80.5
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 5.5e-51 204.5 152 70.4
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 5.5e-51 204.5 124 76.6
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 7.7e-45 184.1 147 68.0
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 2.1e-42 176.0 102 81.4
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 3.9e-41 171.8 147 61.2
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 4.4e-40 168.3 147 61.9
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 4.8e-39 164.9 102 77.5
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 9.1e-38 160.6 149 57.7
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 5.9e-37 157.9 98 81.6
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 8.8e-33 144.1 121 57.0
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 4.7e-26 121.7 127 52.0
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 4.7e-26 121.7 169 44.4
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 3.1e-22 109.0 68 76.5
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 4.1e-22 108.6 76 73.7
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 7.7e-21 104.4 90 53.3
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 1.5e-11 73.6 92 37.0
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 7.3e-11 71.2 37 78.4
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 3.2e-06 55.8 78 35.9


User provided reference genes

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