Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G137600 Glycine max HOM05D001799 ORTHO05D001655 1.1e-110 403.3 208 100.0
Glyma.04G227500 Glycine max HOM05D001799 ORTHO05D001655 7.6e-30 134.8 94 79.8
Ca_16785_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 7.6e-14 81.6 80 51.2
Ca_16801_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 7.6e-14 81.6 80 51.2
arahy.Tifrunner.gnm1.ann1.43FH2R Arachis hypogaea HOM05D001799 ORTHO05D001655 9.9e-14 81.3 58 67.2
arahy.Tifrunner.gnm1.ann1.A9XWZ4 Arachis hypogaea HOM05D001799 ORTHO05D001655 1.3e-13 80.9 58 65.5
Lalb_Chr08g0239541 Lupinus albus HOM05D001799 ORTHO05D001655 1.9e-12 77.0 62 61.3
Psat5g071400 Pisum sativum HOM05D001799 ORTHO05D001655 3.2e-12 76.3 98 43.9
TPR.G33369 Trifolium pratense HOM05D001799 ORTHO05D001655 3.2e-12 76.3 72 55.6
Lalb_Chr23g0271961 Lupinus albus HOM05D001799 ORTHO05D001655 5.4e-12 75.5 62 62.9
Medtr3g092960 Medicago truncatula HOM05D001799 ORTHO05D001655 6.0e-11 72.0 90 46.7
PGSC0003DMG400000581 Solanum tuberosum HOM05D001799 ORTHO05D001655 1.8e-10 70.5 90 46.7
Gohir.A11G016800 Gossypium hirsutum HOM05D001799 ORTHO05D001655 2.3e-10 70.1 102 39.2
Gohir.D11G016600 Gossypium hirsutum HOM05D001799 ORTHO05D001655 2.3e-10 70.1 102 39.2
Ca_16784_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 3.9e-10 69.3 64 48.4
Ca_16800_v3 Cicer arietinum L. HOM05D001799 ORTHO05D001655 3.9e-10 69.3 64 48.4
Gorai.007G017400 Gossypium raimondii HOM05D001799 ORTHO05D001655 8.7e-10 68.2 102 38.2
Ciclev10022593m.g Citrus clementina HOM05D001799 ORTHO05D001655 1.1e-09 67.8 65 47.7
Sopen03g021900 Solanum pennellii HOM05D001799 ORTHO05D001655 1.5e-09 67.4 89 44.9
arahy.Tifrunner.gnm1.ann1.HAI2J2 Arachis hypogaea HOM05D001799 ORTHO05D001655 3.3e-09 66.2 62 53.2
Lj1g0012845 Lotus japonicus HOM05D001799 ORTHO05D001655 3.3e-09 66.2 63 49.2
Hund21066 Selenicereus undatus HOM05D001799 ORTHO05D001655 3.3e-09 66.2 81 45.7
Peaxi162Scf00912g00142 Petunia axillaris HOM05D001799 ORTHO05D001655 4.3e-09 65.9 72 45.8
Solyc03g080170.3 Solanum lycopersicum HOM05D001799 ORTHO05D001655 4.3e-09 65.9 63 52.4
arahy.Tifrunner.gnm1.ann1.L3LS3U Arachis hypogaea HOM05D001799 ORTHO05D001655 5.6e-09 65.5 59 54.2
EL10Ac3g05164 Beta vulgaris HOM05D001799 ORTHO05D001655 5.6e-09 65.5 79 45.6
Nitab4.5_0000021g0110 Nicotiana tabacum HOM05D001799 ORTHO05D001655 1.3e-08 64.3 60 53.3
Ah.07g204490 Amaranthus hybridus HOM05D001799 ORTHO05D001655 1.6e-08 63.9 106 37.7
Duzib205G0886 Durio zibethinus HOM05D001799 ORTHO05D001655 2.8e-08 63.2 101 38.6
TPR.G39833 Trifolium pratense HOM05D001799 ORTHO05D001655 2.8e-08 63.2 70 42.9
Thhalv10026379m.g Eutrema salsugineum HOM05D001799 ORTHO05D001655 3.7e-08 62.8 101 41.6
Nitab4.5_0006821g0050 Nicotiana tabacum HOM05D001799 ORTHO05D001655 3.7e-08 62.8 60 50.0
Carub.0007s1316 Capsella rubella HOM05D001799 ORTHO05D001655 4.8e-08 62.4 96 40.6
CAN.G303.35 Capsicum annuum HOM05D001799 ORTHO05D001655 4.8e-08 62.4 63 47.6
MD07G1211900 Malus domestica HOM05D001799 ORTHO05D001655 4.8e-08 62.4 123 31.7
DCAR_010570 Daucus carota HOM05D001799 ORTHO05D001655 8.1e-08 61.6 71 45.1
Prupe.2G319800 Prunus persica HOM05D001799 ORTHO05D001655 8.1e-08 61.6 90 37.8
QL09p006905 Quercus lobata HOM05D001799 ORTHO05D001655 8.1e-08 61.6 111 35.1
THA.LOC104811886 Tarenaya hassleriana HOM05D001799 ORTHO05D001655 8.1e-08 61.6 85 36.5
Cfa016149 Carpinus fangiana HOM05D000001 ORTHO05D001655 1.4e-07 60.8 90 41.1
MD07G1300600 Malus domestica HOM05D001799 ORTHO05D001655 1.4e-07 60.8 107 37.4
Medtr3g092930 Medicago truncatula HOM05D001799 ORTHO05D001655 1.4e-07 60.8 66 47.0
Lalb_Chr11g0067451 Lupinus albus HOM05D001799 ORTHO05D001655 1.8e-07 60.5 58 53.4
Manes.01G043800 Manihot esculenta HOM05D001799 ORTHO05D001655 1.8e-07 60.5 90 42.2
CANSAT21G2156 Cannabis sativa HOM05D001799 ORTHO05D001655 2.4e-07 60.1 69 47.8
Ah.13g070830 Amaranthus hybridus HOM05D001799 ORTHO05D001655 3.1e-07 59.7 57 49.1
AL8G29290 Arabidopsis lyrata HOM05D001799 ORTHO05D001655 3.1e-07 59.7 64 45.3
Sp6g16200 Schrenkiella parvula HOM05D001799 ORTHO05D001655 3.1e-07 59.7 60 48.3
Sc19g0000540 Simmondsia chinensis HOM05D001799 ORTHO05D001655 3.1e-07 59.7 105 37.1
Glyma.04G227600 Glycine max HOM05D001799 ORTHO05D001655 4.0e-07 59.3 57 45.6
MSTRG.26970 Avicennia marina HOM05D001799 ORTHO05D001655 5.3e-07 58.9 62 43.5
BcaB01g04279 Brassica carinata HOM05D001799 ORTHO05D001655 5.3e-07 58.9 61 50.8
Dinv29206 Davidia involucrata HOM05D001799 ORTHO05D001655 5.3e-07 58.9 95 43.2
Aa31LG3G9870 Aethionema arabicum HOM05D001799 ORTHO05D001655 6.9e-07 58.5 77 41.6
Ah.13g070840 Amaranthus hybridus HOM05D001799 ORTHO05D001655 6.9e-07 58.5 77 41.6
Thecc.03G209600 Theobroma cacao HOM05D001799 ORTHO05D001655 6.9e-07 58.5 96 39.6
Lj3A893T82 Lonicera japonica HOM05D001799 ORTHO05D001655 9.0e-07 58.2 62 48.4
MD07G1300800 Malus domestica HOM05D001799 ORTHO05D001655 9.0e-07 58.2 124 33.1
CSS0016235 Camellia sinensis var. sinensis HOM05D001799 ORTHO05D001655 1.2e-06 57.8 64 51.6
Nn1g09661 Nelumbo nucifera HOM05D001799 ORTHO05D001655 1.2e-06 57.8 65 41.5
Nn8g39146 Nelumbo nucifera HOM05D001799 ORTHO05D001655 1.2e-06 57.8 65 41.5
QL09p006902 Quercus lobata HOM05D001799 ORTHO05D001655 1.2e-06 57.8 68 47.1
SHI02275 Sapria himalayana HOM05D001799 ORTHO05D001655 1.2e-06 57.8 86 31.4
AT5G54148 Arabidopsis thaliana HOM05D001799 ORTHO05D001655 1.5e-06 57.4 47 55.3
BcaNung01644 Brassica carinata HOM05D001799 ORTHO05D001655 1.5e-06 57.4 99 36.4
Carub.0008s1445 Capsella rubella HOM05D001799 ORTHO05D001655 1.5e-06 57.4 58 41.4
Haze_00305 Corylus avellana HOM05D000001 ORTHO05D001653 1.5e-06 57.4 136 33.1
AT4G27660 Arabidopsis thaliana HOM05D001799 ORTHO05D001655 2.0e-06 57.0 62 53.2
Cc02_g00750 Coffea canephora HOM05D001799 ORTHO05D001655 2.0e-06 57.0 66 43.9
Sabra12G0008400 Salix brachista HOM05D001799 ORTHO05D001655 2.0e-06 57.0 106 38.7
TAR375G0758 Trochodendron aralioides HOM05D001799 ORTHO05D001655 2.6e-06 56.6 64 43.8
AL7G25010 Arabidopsis lyrata HOM05D001799 ORTHO05D001655 3.4e-06 56.2 60 51.7
Potri.015G003200 Populus trichocarpa HOM05D001799 ORTHO05D001655 3.4e-06 56.2 70 47.1
AUR62005982 Chenopodium quinoa HOM05D001799 ORTHO05D001655 4.5e-06 55.8 57 43.9
FvH4_7g33000 Fragaria vesca HOM05D001799 ORTHO05D001655 4.5e-06 55.8 135 31.9
Atru.chr12.2490 Acer truncatum HOM05D001799 ORTHO05D001655 5.8e-06 55.5 79 39.2
CARHR267350 Cardamine hirsuta HOM05D001799 ORTHO05D001655 5.8e-06 55.5 62 46.8
Sp7g25630 Schrenkiella parvula HOM05D001799 ORTHO05D001655 5.8e-06 55.5 61 47.5
BcaC09g50556 Brassica carinata HOM05D001799 ORTHO05D001655 7.6e-06 55.1 61 45.9
C01p23980 Brassica napus HOM05D001799 ORTHO05D001655 7.6e-06 55.1 61 45.9
COL.COLO4_14379 Corchorus olitorius HOM05D001799 ORTHO05D001655 7.6e-06 55.1 63 44.4
SGA_v2.0_scaffold18G08472 Striga asiatica HOM05D001799 ORTHO05D001655 7.6e-06 55.1 101 37.6
Atru.chr12.2449 Acer truncatum HOM05D001799 ORTHO05D001655 9.9e-06 54.7 79 38.0
A03p57450 Brassica napus HOM05D001799 ORTHO05D001655 9.9e-06 54.7 86 37.2
Sabra15G0002100 Salix brachista HOM05D001799 ORTHO05D001655 9.9e-06 54.7 70 45.7


User provided reference genes

Program Settings