Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 3.3e-231 804.7 404 100.0
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 1.4e-213 746.1 404 92.3
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 1.3e-198 696.4 404 87.4
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 1.5e-196 689.5 404 86.6
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 1.2e-183 646.7 407 81.6
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 5.7e-183 644.4 406 80.8
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 8.2e-182 640.6 345 95.1
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 1.1e-181 640.2 407 80.8
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 1.0e-179 633.6 399 81.2
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 6.5e-179 630.9 406 80.8
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 1.6e-177 626.3 406 79.8
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 2.1e-177 625.9 406 80.0
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 5.2e-176 621.3 409 78.7
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 2.4e-173 612.5 382 81.9
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 1.7e-171 606.3 406 75.9
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 7.2e-170 600.9 406 75.4
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 5.2e-160 568.2 409 70.9
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 2.0e-159 566.2 408 69.4
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 1.3e-158 563.5 409 70.2
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 4.9e-158 561.6 410 70.5
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.7e-156 555.8 412 68.0
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.6e-156 555.1 412 68.0
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.3e-155 553.5 412 67.5
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 2.5e-154 549.3 412 67.7
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.5e-154 549.3 412 67.7
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 2.5e-154 549.3 416 67.8
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 1.2e-153 547.0 411 67.4
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 2.8e-153 545.8 410 67.8
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 8.9e-152 540.8 406 68.2
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 3.4e-151 538.9 412 66.0
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 9.2e-149 530.8 413 66.3
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 1.2e-148 530.4 411 65.2
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 4.6e-148 528.5 411 66.2
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 6.0e-148 528.1 410 64.6
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 3.3e-146 522.3 412 64.8
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 7.3e-146 521.2 410 64.6
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 6.2e-145 518.1 408 64.7
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 6.2e-145 518.1 405 65.9
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 1.1e-144 517.3 406 65.8
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.8e-144 516.5 409 64.3
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 3.1e-144 515.8 408 63.7
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 3.1e-144 515.8 477 58.1
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 2.6e-143 512.7 386 67.1
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 2.6e-143 512.7 409 63.8
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 9.9e-143 510.8 408 63.0
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 6.4e-142 508.1 401 62.3
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 8.3e-142 507.7 418 62.2
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 2.4e-141 506.1 408 63.0
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 1.2e-140 503.8 439 59.2
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 2.1e-140 503.1 409 62.8
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 1.7e-139 500.0 410 63.7
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 3.3e-138 495.7 405 61.5
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.6e-137 493.4 380 63.7
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 4.7e-137 491.9 409 61.4
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 1.4e-136 490.3 407 59.2
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 2.4e-136 489.6 411 61.3
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 2.4e-136 489.6 381 63.5
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 2.4e-136 489.6 414 61.6
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 3.1e-136 489.2 381 64.6
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 3.1e-136 489.2 408 63.2
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 2.6e-135 486.1 415 60.5
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 3.8e-134 482.3 411 61.8
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 6.4e-134 481.5 407 58.7
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 3.2e-133 479.2 410 59.0
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 5.4e-133 478.4 406 60.3
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 4.6e-132 475.3 415 59.8
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 2.5e-130 469.5 412 59.7
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 2.8e-129 466.1 412 56.3
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 4.7e-129 465.3 418 56.2
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 5.2e-128 461.8 417 56.1
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 6.9e-128 461.5 351 66.4
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 9.0e-128 461.1 408 58.6
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 9.0e-128 461.1 405 57.3
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 6.4e-126 454.9 416 58.2
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 1.9e-125 453.4 397 57.2
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 7.1e-125 451.4 415 59.3
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 1.3e-123 447.2 385 58.4
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 2.3e-123 446.4 413 55.9
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 5.1e-123 445.3 338 67.2
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 4.3e-122 442.2 394 55.8
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 8.1e-121 438.0 361 61.2
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 2.4e-120 436.4 410 54.4
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 3.1e-120 436.0 347 63.4
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 4.0e-120 435.6 408 53.4
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 9.0e-120 434.5 411 55.7
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 8.4e-118 427.9 411 56.0
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 8.4e-118 427.9 411 56.2
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 1.9e-117 426.8 412 55.3
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 1.9e-117 426.8 412 55.1
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 3.2e-117 426.0 442 55.0
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 9.3e-117 424.5 412 55.1
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 2.3e-115 419.9 342 61.1
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 5.1e-115 418.7 358 58.4
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 1.5e-114 417.2 384 57.6
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.1e-112 411.0 430 49.8
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 1.2e-111 407.5 389 54.2
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 2.0e-111 406.8 411 53.0
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 9.9e-111 404.4 347 58.2
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 6.4e-110 401.7 413 53.3
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 2.1e-108 396.7 389 54.0
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.8e-107 393.7 299 67.2
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 2.1e-105 386.7 384 54.7
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.8e-104 383.6 465 43.9
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 3.1e-104 382.9 452 43.8
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 8.4e-102 374.8 352 55.1
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 3.4e-87 326.2 461 39.9
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 4.5e-87 325.9 472 39.0
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 5.5e-85 318.9 376 44.1
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 2.1e-84 317.0 264 59.5
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 2.9e-78 296.6 214 66.4
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 5.0e-78 295.8 315 48.3
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 1.3e-73 281.2 232 65.1
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 1.3e-73 281.2 352 48.6
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 3.7e-73 279.6 195 70.8
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.8e-73 279.3 190 71.6
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.0e-62 245.0 183 63.9
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 1.3e-62 244.6 271 50.6
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 2.2e-62 243.8 310 43.2
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 1.7e-54 217.6 156 71.2
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 2.5e-45 187.2 401 32.7
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 1.8e-43 181.0 132 68.2
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 1.4e-40 171.4 139 63.3
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 7.8e-39 165.6 277 38.3
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 3.9e-38 163.3 153 55.6
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 4.3e-37 159.8 332 31.3
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.2e-36 158.3 118 67.8
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.5e-31 140.2 153 49.7
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 2.3e-30 137.5 312 29.5
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 1.1e-29 135.2 594 24.1
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 4.3e-29 133.3 94 68.1
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 1.2e-28 131.7 166 47.6
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 1.0e-22 112.1 79 68.4
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 6.4e-17 92.8 92 50.0
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 1.5e-13 81.6 82 54.9
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 1.2e-10 72.0 56 64.3
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 6.4e-09 66.2 114 37.7
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 8.4e-09 65.9 80 41.2
MD05G1136200 Malus domestica HOM05D002505 ORTHO05D007115 2.3e-06 57.8 31 80.6
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 2.3e-06 57.8 346 22.8


User provided reference genes

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