Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G129500 Glycine max HOM05D002546 ORTHO05D002671 1.1e-112 410.2 235 100.0
Glyma.04G235100 Glycine max HOM05D002546 ORTHO05D002671 8.7e-91 337.4 228 79.4
Phvul.009G052000 Phaseolus vulgaris HOM05D002546 ORTHO05D002671 4.0e-80 302.0 226 71.2
Lj1g0024019 Lotus japonicus HOM05D002546 ORTHO05D002671 3.8e-54 215.7 249 50.6
Ca_16712_v3 Cicer arietinum L. HOM05D002546 ORTHO05D002671 2.1e-52 209.9 233 51.1
TPR.G19364 Trifolium pratense HOM05D002546 ORTHO05D002671 2.0e-50 203.4 237 48.5
Lalb_Chr08g0240191 Lupinus albus HOM05D002546 ORTHO05D002671 4.8e-49 198.7 257 44.4
Lalb_Chr11g0066921 Lupinus albus HOM05D002546 ORTHO05D002671 6.3e-49 198.4 243 44.4
Psat5g076720 Pisum sativum HOM05D002546 ORTHO05D002671 1.8e-48 196.8 235 48.1
Medtr3g091610 Medicago truncatula HOM05D002546 ORTHO05D002671 3.1e-48 196.1 236 48.3
arahy.Tifrunner.gnm1.ann1.D1PG31 Arachis hypogaea HOM05D002546 ORTHO05D002671 3.5e-39 166.0 277 38.3
arahy.Tifrunner.gnm1.ann1.DAH91N Arachis hypogaea HOM05D002546 ORTHO05D002671 1.3e-38 164.1 276 38.4
Atru.chr12.2223 Acer truncatum HOM05D002546 ORTHO05D002671 8.8e-35 151.4 257 41.2
CANSAT54G0351 Cannabis sativa HOM05D002546 ORTHO05D002671 2.8e-33 146.4 252 39.3
MD01G1217900 Malus domestica HOM05D002546 ORTHO05D002671 6.3e-33 145.2 258 39.9
Prupe.2G309300 Prunus persica HOM05D002546 ORTHO05D002671 6.3e-33 145.2 256 38.3
QL09p008716 Quercus lobata HOM05D002546 ORTHO05D002671 3.1e-32 142.9 255 36.5
MELO3C021488.2 Cucumis melo HOM05D002546 ORTHO05D002671 4.1e-32 142.5 257 36.6
ClCG09G018560 Citrullus lanatus HOM05D002546 ORTHO05D002671 5.4e-32 142.1 257 37.4
TWI23G0928 Tripterygium wilfordii HOM05D002546 ORTHO05D002671 5.4e-32 142.1 259 38.2
Hma1.2p1_1507F.1_g287620 Hydrangea macrophylla HOM05D002546 ORTHO05D002671 1.2e-31 141.0 248 34.7
TWI39G0578 Tripterygium wilfordii HOM05D002546 ORTHO05D002671 1.6e-31 140.6 262 36.6
Sed0021708 Sechium edule HOM05D002546 ORTHO05D002671 2.0e-31 140.2 253 34.4
Manes.01G184100 Manihot esculenta HOM05D002546 ORTHO05D002671 4.5e-31 139.0 278 34.2
Sed0003835 Sechium edule HOM05D002546 ORTHO05D002671 4.5e-31 139.0 240 37.9
CiPaw.05G197400 Carya illinoinensis HOM05D002546 ORTHO05D002671 1.3e-30 137.5 262 35.1
MD07G1287600 Malus domestica HOM05D002546 ORTHO05D002671 1.3e-30 137.5 256 38.3
Potri.015G012300 Populus trichocarpa HOM05D002546 ORTHO05D002671 1.3e-30 137.5 260 32.7
RcHm_v2.0_Chr1g0380501 Rosa chinensis HOM05D002546 ORTHO05D002671 1.3e-30 137.5 256 36.3
SGA_v2.0_scaffold192G40535 Striga asiatica HOM05D002546 ORTHO05D002671 2.9e-30 136.3 249 34.1
Cfa016236 Carpinus fangiana HOM05D002546 ORTHO05D002671 1.5e-29 134.0 257 35.0
FvH4_7g31440 Fragaria vesca HOM05D002546 ORTHO05D002671 1.9e-29 133.7 253 34.4
Gorai.008G268400 Gossypium raimondii HOM05D002546 ORTHO05D002671 1.9e-29 133.7 260 35.4
Sabra15G0009900 Salix brachista HOM05D002546 ORTHO05D002671 1.9e-29 133.7 260 32.3
THA.LOC104825149 Tarenaya hassleriana HOM05D002546 ORTHO05D002671 2.5e-29 133.3 262 32.4
Duzib084G1168 Durio zibethinus HOM05D002546 ORTHO05D002671 1.2e-28 131.0 261 36.4
FAN03G1114 Fragaria x ananassa HOM05D002546 ORTHO05D002671 1.6e-28 130.6 256 33.6
Gohir.D12G250300 Gossypium hirsutum HOM05D002546 ORTHO05D002671 2.1e-28 130.2 260 33.1
Ciclev10021823m.g Citrus clementina HOM05D002546 ORTHO05D002671 2.7e-28 129.8 253 33.6
Migut.F00205 Erythranthe guttata HOM05D002546 ORTHO05D002671 2.7e-28 129.8 258 32.6
Hma1.2p1_0404F.1_g145300 Hydrangea macrophylla HOM05D002546 ORTHO05D002671 2.7e-28 129.8 259 35.5
PGR142G3961 Punica granatum HOM05D002546 ORTHO05D002671 2.7e-28 129.8 259 31.3
Gohir.A12G249500 Gossypium hirsutum HOM05D002546 ORTHO05D002671 3.6e-28 129.4 251 34.3
THA.LOC104811915 Tarenaya hassleriana HOM05D002546 ORTHO05D002671 4.7e-28 129.0 260 31.5
CiPaw.06G045700 Carya illinoinensis HOM05D002546 ORTHO05D002671 6.1e-28 128.6 259 33.2
Sc13g0009890 Simmondsia chinensis HOM05D002546 ORTHO05D002671 6.1e-28 128.6 245 33.9
FAN01G0698 Fragaria x ananassa HOM05D002546 ORTHO05D002671 8.0e-28 128.3 256 33.6
Potri.012G016400 Populus trichocarpa HOM05D002546 ORTHO05D002671 8.0e-28 128.3 264 33.0
Haze_00205 Corylus avellana HOM05D002546 ORTHO05D002671 1.8e-27 127.1 260 34.2
Thecc.03G200000 Theobroma cacao HOM05D002546 ORTHO05D002671 1.8e-27 127.1 259 34.4
PGSC0003DMG400018551 Solanum tuberosum HOM05D002546 ORTHO05D002671 2.3e-27 126.7 261 34.1
Duzib205G0023 Durio zibethinus HOM05D002546 ORTHO05D002671 4.0e-27 125.9 260 35.0
Solyc03g083070.3 Solanum lycopersicum HOM05D002546 ORTHO05D002671 5.2e-27 125.6 266 32.7
Cpa.g.sc3.94 Carica papaya HOM05D002546 ORTHO05D002671 6.8e-27 125.2 271 33.2
Thhalv10016082m.g Eutrema salsugineum HOM05D002546 ORTHO05D002671 8.8e-27 124.8 268 29.9
Aa31LG3G9480 Aethionema arabicum HOM05D002546 ORTHO05D002671 1.2e-26 124.4 268 31.0
Sp6g15150 Schrenkiella parvula HOM05D002546 ORTHO05D002671 1.5e-26 124.0 270 28.5
Sopen03g022870 Solanum pennellii HOM05D002546 ORTHO05D002671 2.0e-26 123.6 266 32.3
Cc02_g01470 Coffea canephora HOM05D002546 ORTHO05D002671 4.4e-26 122.5 262 30.9
CSS0038427 Camellia sinensis var. sinensis HOM05D002546 ORTHO05D002671 7.5e-26 121.7 280 31.1
MSTRG.8649 Avicennia marina HOM05D002546 ORTHO05D002671 9.8e-26 121.3 256 32.0
CAN.G481.18 Capsicum annuum HOM05D002546 ORTHO05D002671 9.8e-26 121.3 265 31.7
SalBow4G2158 Salvia bowleyana HOM05D002546 ORTHO05D002671 1.3e-25 120.9 261 32.2
AT5G52990 Arabidopsis thaliana HOM05D002546 ORTHO05D002671 1.7e-25 120.6 270 31.1
A03p57540 Brassica napus HOM05D002546 ORTHO05D002671 2.8e-25 119.8 257 31.5
BraA03t14822Z Brassica rapa HOM05D002546 ORTHO05D002671 2.8e-25 119.8 257 31.5
CARHR265980 Cardamine hirsuta HOM05D002546 ORTHO05D002671 2.8e-25 119.8 273 30.0
FAN06G2719 Fragaria x ananassa HOM05D002546 ORTHO05D002671 2.8e-25 119.8 249 33.3
Carub.0008s1319 Capsella rubella HOM05D002546 ORTHO05D002671 3.7e-25 119.4 272 30.5
Migut.F01026 Erythranthe guttata HOM05D002546 ORTHO05D002671 4.9e-25 119.0 268 31.0
BolC7t46054H Brassica oleracea HOM05D002546 ORTHO05D002671 6.3e-25 118.6 257 30.7
BcaB05g21997 Brassica carinata HOM05D002546 ORTHO05D002671 1.1e-24 117.9 265 29.8
AL8G27530 Arabidopsis lyrata HOM05D002546 ORTHO05D002671 1.4e-24 117.5 249 32.5
C07p55760 Brassica napus HOM05D002546 ORTHO05D002671 1.4e-24 117.5 236 31.4
Rhsim09G0206000 Rhododendron simsii HOM05D002546 ORTHO05D002671 1.4e-24 117.5 273 32.2
AL8G27590 Arabidopsis lyrata HOM05D002546 ORTHO05D002671 1.8e-24 117.1 269 30.5
Oeu010693.1 Olea europaea HOM05D002546 ORTHO05D002671 2.4e-24 116.7 273 30.8
SGA_v2.0_scaffold13G06539 Striga asiatica HOM05D002546 ORTHO05D002671 2.4e-24 116.7 248 31.9
Nitab4.5_0007005g0010 Nicotiana tabacum HOM05D002546 ORTHO05D002671 3.1e-24 116.3 270 30.0
Manes.02G143800 Manihot esculenta HOM05D002546 ORTHO05D002671 4.1e-24 115.9 278 30.9
Peaxi162Scf00740g00014 Petunia axillaris HOM05D002546 ORTHO05D002671 5.4e-24 115.5 281 30.6
AL7G24810 Arabidopsis lyrata HOM05D002546 ORTHO05D002671 9.2e-24 114.8 261 28.7
BolC2t08030H Brassica oleracea HOM05D002546 ORTHO05D002671 9.2e-24 114.8 260 33.1
C02p18890 Brassica napus HOM05D002546 ORTHO05D002671 1.2e-23 114.4 264 33.0
vmacro10125 Vaccinium macrocarpon HOM05D002546 ORTHO05D002671 1.6e-23 114.0 249 34.9
A10p10470 Brassica napus HOM05D002546 ORTHO05D002671 2.0e-23 113.6 265 30.6
Nitab4.5_0005393g0010 Nicotiana tabacum HOM05D002546 ORTHO05D002671 2.0e-23 113.6 275 29.8
BcaC03g14467 Brassica carinata HOM05D002546 ORTHO05D002671 2.7e-23 113.2 260 31.2
FAN10G2266 Fragaria x ananassa HOM05D002546 ORTHO05D002671 3.5e-23 112.8 243 32.5
BraA10t43130Z Brassica rapa HOM05D002546 ORTHO05D002671 4.5e-23 112.5 268 30.2
A02p11380 Brassica napus HOM05D002546 ORTHO05D002671 5.9e-23 112.1 259 31.7
Thhalv10025998m.g Eutrema salsugineum HOM05D002546 ORTHO05D002671 5.9e-23 112.1 262 29.0
BraA02t06202Z Brassica rapa HOM05D002546 ORTHO05D002671 7.7e-23 111.7 259 31.7
EL10Ac3g05273 Beta vulgaris HOM05D002546 ORTHO05D002671 1.0e-22 111.3 272 30.1
Oeu037180.2 Olea europaea HOM05D002546 ORTHO05D002671 1.0e-22 111.3 272 30.1
Oeu060990.1 Olea europaea HOM05D002546 ORTHO05D002671 1.0e-22 111.3 271 28.8
SGA_v2.0_scaffold55G19774 Striga asiatica HOM05D002546 ORTHO05D002671 2.3e-22 110.2 245 31.4
C09p42700 Brassica napus HOM05D002546 ORTHO05D002671 3.8e-22 109.4 266 29.7
BolC9t57146H Brassica oleracea HOM05D002546 ORTHO05D002671 3.8e-22 109.4 266 29.7
Lj5g0009537 Lotus japonicus HOM05D002546 ORTHO05D002671 3.8e-22 109.4 101 56.4
AT4G27840 Arabidopsis thaliana HOM05D002546 ORTHO05D002671 5.0e-22 109.0 259 27.4
DCAR_010596 Daucus carota HOM05D002546 ORTHO05D002671 8.6e-22 108.2 250 29.6
PSO832G4337 Papaver somniferum HOM05D002546 ORTHO05D002671 1.2e-20 104.4 251 28.3
Hma1.2p1_1587F.1_g292300 Hydrangea macrophylla HOM05D002546 ORTHO05D002671 2.1e-20 103.6 244 33.6
FAN10G2463 Fragaria x ananassa HOM05D000630 ORTHO05D002671 3.6e-20 102.8 237 34.6
BcaC06g32660 Brassica carinata HOM05D002546 ORTHO05D002671 4.7e-20 102.4 242 28.1
HanXRQChr08g0225361 Helianthus annuus HOM05D002546 ORTHO05D002671 4.7e-20 102.4 225 30.7
CARHR235550 Cardamine hirsuta HOM05D002546 ORTHO05D002671 2.3e-19 100.1 248 28.2
unitig_90.g27524 Utricularia gibba HOM05D002546 ORTHO05D002671 2.3e-19 100.1 243 28.0
CsaV3_5G037670 Cucumis sativus L. HOM05D002546 ORTHO05D002671 4.0e-19 99.4 124 41.9
FAN06G0879 Fragaria x ananassa HOM05D002546 ORTHO05D002671 8.9e-19 98.2 123 42.3
MBI07_g37203_MAGBIO Magnolia biondii HOM05D002546 ORTHO05D002671 8.9e-19 98.2 233 28.8
Aqoxy5G04280 Aquilegia oxysepala HOM05D002546 ORTHO05D002671 2.0e-18 97.1 267 27.7
Ah.07g205550 Amaranthus hybridus HOM05D002546 ORTHO05D002671 3.4e-18 96.3 267 27.7
Carub.0007s1300 Capsella rubella HOM05D000073 ORTHO05D000033 4.4e-18 95.9 257 28.0
THA.LOC104799973 Tarenaya hassleriana HOM05D002546 ORTHO05D002671 4.4e-18 95.9 241 31.1
TAR375G0270 Trochodendron aralioides HOM05D002546 ORTHO05D002671 4.4e-18 95.9 257 28.4
Dinv29272 Davidia involucrata HOM05D002546 ORTHO05D002671 5.7e-18 95.5 124 41.1
Actinidia06145 Actinidia chinensis HOM05D002546 ORTHO05D002671 7.5e-18 95.1 128 41.4
MBI06_g10865_MAGBIO Magnolia biondii HOM05D000078 ORTHO05D002671 4.9e-17 92.4 241 28.2
Dinv35341 Davidia involucrata HOM05D000736 ORTHO05D002671 6.4e-17 92.0 239 29.7
AL4G21080 Arabidopsis lyrata HOM05D002546 ORTHO05D002671 8.3e-17 91.7 97 44.3
Eucgr.K00388 Eucalyptus grandis HOM05D002546 ORTHO05D002671 1.8e-16 90.5 235 28.5
DCAR_020324 Daucus carota HOM05D000156 ORTHO05D005692 5.4e-16 89.0 246 29.7
Lsat_1_v5_gn_8_5280 Lactuca sativa HOM05D002546 ORTHO05D002671 7.0e-16 88.6 238 30.3
Pp3c20_6780 Physcomitrium patens HOM05D002546 ORTHO05D002671 7.8e-15 85.1 258 26.7
AUR62006084 Chenopodium quinoa HOM05D002546 ORTHO05D002671 1.0e-14 84.7 128 35.9
AUR62019410 Chenopodium quinoa HOM05D002546 ORTHO05D002671 1.0e-14 84.7 128 35.9
Pp3c24_6430 Physcomitrium patens HOM05D002546 ORTHO05D002671 6.6e-14 82.0 261 25.7
SEGI_19070 Sequoiadendron giganteum HOM05D002546 ORTHO05D002671 6.6e-14 82.0 295 23.1
TAR374G0327 Trochodendron aralioides HOM05D002546 ORTHO05D002671 6.6e-14 82.0 246 26.0
COL.COLO4_16770 Corchorus olitorius HOM05D000513 ORTHO05D007779 9.5e-13 78.2 100 42.0
Pp3c8_14310 Physcomitrium patens HOM05D002546 ORTHO05D002671 9.5e-13 78.2 258 22.9
RcHm_v2.0_Chr1g0359031 Rosa chinensis HOM05D002546 ORTHO05D002671 1.2e-12 77.8 89 46.1
ATR1089G142 Amborella trichopoda HOM05D002546 ORTHO05D002671 3.6e-12 76.3 259 26.6
PSO210G6801 Papaver somniferum HOM05D002546 ORTHO05D002671 6.8e-11 72.0 124 29.8
PSO135G0507 Papaver somniferum HOM05D002546 ORTHO05D002671 1.5e-10 70.9 262 22.9
CSS0004784 Camellia sinensis var. sinensis HOM05D002546 ORTHO05D002671 2.6e-10 70.1 221 38.9
HPP92_002937 Vanilla planifolia HOM05D002546 ORTHO05D002671 9.8e-10 68.2 239 23.4
CDE04G3511 Ceratophyllum demersum HOM05D002546 ORTHO05D002671 1.3e-09 67.8 261 24.9
SalBow7G2174 Salvia bowleyana HOM05D002546 ORTHO05D002671 1.7e-09 67.4 234 25.2
Os08g0110300 Oryza sativa ssp. japonica HOM05D002546 ORTHO05D002671 6.4e-09 65.5 251 24.3
Ah.05g170460 Amaranthus hybridus HOM05D002546 ORTHO05D002671 1.4e-08 64.3 260 23.5
AT4G10170 Arabidopsis thaliana HOM05D002546 ORTHO05D002671 4.1e-08 62.8 252 23.8
Zm00001eb260450 Zea mays HOM05D002546 ORTHO05D002671 5.4e-08 62.4 248 32.3
Migut.C01401 Erythranthe guttata HOM05D002546 ORTHO05D002671 7.0e-08 62.0 287 22.3
MD05G1005900 Malus domestica HOM05D002546 ORTHO05D002671 9.2e-08 61.6 278 21.2
MBI06_g32150_MAGBIO Magnolia biondii HOM05D002546 ORTHO05D002671 1.6e-07 60.8 246 22.4
QL09p001240 Quercus lobata HOM05D002546 ORTHO05D002671 2.0e-07 60.5 265 21.9
vmacro17748 Vaccinium macrocarpon HOM05D002546 ORTHO05D002671 2.7e-07 60.1 109 32.1
AUR62038544 Chenopodium quinoa HOM05D002546 ORTHO05D002671 3.5e-07 59.7 117 30.8
Lj7P416T23 Lonicera japonica HOM05D002546 ORTHO05D002671 3.5e-07 59.7 249 21.7
BcaB01g02764 Brassica carinata HOM05D002546 ORTHO05D002671 4.6e-07 59.3 249 22.9
CARHR256650 Cardamine hirsuta HOM05D002546 ORTHO05D002671 4.6e-07 59.3 87 34.5
Nitab4.5_0007335g0010 Nicotiana tabacum HOM05D002546 ORTHO05D002671 4.6e-07 59.3 237 23.2
RcHm_v2.0_Chr2g0122261 Rosa chinensis HOM05D002546 ORTHO05D002671 4.6e-07 59.3 68 41.2
PSO063G6637 Papaver somniferum HOM05D002546 ORTHO05D002671 6.0e-07 58.9 280 22.9
Sp1g28920 Schrenkiella parvula HOM05D002546 ORTHO05D002671 6.0e-07 58.9 96 30.2
Thhalv10008489m.g Eutrema salsugineum HOM05D002546 ORTHO05D002671 7.8e-07 58.5 88 33.0
Cfa008037 Carpinus fangiana HOM05D002546 ORTHO05D002671 1.0e-06 58.2 278 20.5
Haze_14786 Corylus avellana HOM05D002546 ORTHO05D002671 1.0e-06 58.2 273 22.3
AL6G44020 Arabidopsis lyrata HOM05D002546 ORTHO05D002671 1.3e-06 57.8 256 23.0
Thhalv10028894m.g Eutrema salsugineum HOM05D002546 ORTHO05D002671 1.3e-06 57.8 257 24.1
MELO3C008104.2 Cucumis melo HOM05D002546 ORTHO05D002671 1.7e-06 57.4 276 22.8
ECA233G1114 Erigeron canadensis HOM05D002546 ORTHO05D002671 1.7e-06 57.4 167 27.5
PSO782G5177 Papaver somniferum HOM05D002546 ORTHO05D002671 1.7e-06 57.4 278 20.5
CsaV3_2G033340 Cucumis sativus L. HOM05D002546 ORTHO05D002671 2.3e-06 57.0 276 22.1
Lsat_1_v5_gn_4_132401 Lactuca sativa HOM05D002546 ORTHO05D002671 3.0e-06 56.6 94 29.8
BcaB07g32991 Brassica carinata HOM05D002546 ORTHO05D002671 3.9e-06 56.2 249 20.9
Carub.0006s2873 Capsella rubella HOM05D002546 ORTHO05D002671 3.9e-06 56.2 251 21.5
CAN.G14.44 Capsicum annuum HOM05D002546 ORTHO05D002671 3.9e-06 56.2 241 23.2
Sc01g0000170 Simmondsia chinensis HOM05D002546 ORTHO05D002671 3.9e-06 56.2 263 22.8
SGA_v2.0_scaffold118G32639 Striga asiatica HOM05D002546 ORTHO05D002671 3.9e-06 56.2 91 35.2
VMungo1080G1313 Vigna mungo HOM05D002546 ORTHO05D002671 3.9e-06 56.2 87 33.3
CARHR032910 Cardamine hirsuta HOM05D002546 ORTHO05D002671 5.0e-06 55.8 97 30.9
Nitab4.5_0009484g0030 Nicotiana tabacum HOM05D000407 ORTHO05D000558 5.0e-06 55.8 107 28.0
Sabra08G0012800 Salix brachista HOM05D000407 ORTHO05D000558 5.0e-06 55.8 112 27.7
Carub.0001s3166 Capsella rubella HOM05D002546 ORTHO05D002671 6.6e-06 55.5 245 20.4
COL.COLO4_08483 Corchorus olitorius HOM05D000407 ORTHO05D000558 6.6e-06 55.5 93 30.1
Haze_14008 Corylus avellana HOM05D002546 ORTHO05D002671 6.6e-06 55.5 273 21.2
Oeu026606.2 Olea europaea HOM05D000407 ORTHO05D000558 6.6e-06 55.5 109 29.4
Potri.008G019400 Populus trichocarpa HOM05D000407 ORTHO05D000558 6.6e-06 55.5 112 27.7
Aa31LG9G11840 Aethionema arabicum HOM05D002546 ORTHO05D002671 8.6e-06 55.1 87 33.3
AT1G33475 Arabidopsis thaliana HOM05D002546 ORTHO05D002671 8.6e-06 55.1 245 21.2
Cfa007307 Carpinus fangiana HOM05D002546 ORTHO05D002671 8.6e-06 55.1 271 22.5
FvH4_2g00290 Fragaria vesca HOM05D002546 ORTHO05D002671 8.6e-06 55.1 271 21.0
Potri.010G239900 Populus trichocarpa HOM05D000407 ORTHO05D000558 8.6e-06 55.1 241 20.3


User provided reference genes

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