Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 4.2e-93 344.7 180 100.0
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 1.5e-79 299.7 187 86.6
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 1.4e-77 293.1 184 85.9
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 1.6e-73 279.6 184 79.3
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 2.3e-67 259.2 192 76.0
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 3.9e-67 258.5 197 74.6
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 4.5e-63 245.0 177 75.1
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 5.9e-63 244.6 177 76.8
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 5.5e-61 238.0 175 75.4
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 8.8e-59 230.7 188 67.6
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 2.0e-58 229.6 157 77.7
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 9.7e-58 227.3 182 68.1
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 1.3e-57 226.9 155 74.8
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 1.7e-57 226.5 216 60.2
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 2.2e-57 226.1 215 60.5
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 2.8e-57 225.7 157 76.4
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 4.8e-57 224.9 155 74.8
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 4.8e-57 224.9 218 60.1
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 6.3e-57 224.6 188 67.0
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 8.2e-57 224.2 182 67.6
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 1.1e-56 223.8 216 58.8
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 2.4e-56 222.6 156 73.7
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 4.1e-56 221.9 196 63.3
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 4.1e-56 221.9 155 74.8
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 5.3e-56 221.5 188 66.0
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 6.9e-56 221.1 155 75.5
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 6.9e-56 221.1 157 75.2
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 6.9e-56 221.1 156 73.1
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 9.1e-56 220.7 213 58.7
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 9.1e-56 220.7 184 65.8
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 9.1e-56 220.7 217 58.1
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 9.1e-56 220.7 157 72.0
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 1.2e-55 220.3 149 79.2
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 1.5e-55 219.9 156 73.7
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 1.5e-55 219.9 156 73.7
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 1.5e-55 219.9 205 61.5
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 2.0e-55 219.5 203 62.6
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 2.0e-55 219.5 156 72.4
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 2.6e-55 219.2 155 72.9
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 3.4e-55 218.8 155 74.8
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 4.5e-55 218.4 155 73.5
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 4.5e-55 218.4 155 73.5
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 7.7e-55 217.6 155 72.9
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 7.7e-55 217.6 155 72.9
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 7.7e-55 217.6 215 60.5
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 1.0e-54 217.2 206 56.8
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 1.3e-54 216.9 155 72.3
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.7e-54 216.5 179 65.9
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 1.7e-54 216.5 179 65.9
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 1.7e-54 216.5 155 74.2
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 2.9e-54 215.7 184 66.3
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 2.9e-54 215.7 157 72.0
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 5.0e-54 214.9 155 71.6
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 6.5e-54 214.5 157 72.0
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 1.1e-53 213.8 155 72.3
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 1.4e-53 213.4 155 72.3
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 1.9e-53 213.0 156 69.9
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 1.9e-53 213.0 155 70.3
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 1.9e-53 213.0 155 72.3
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 3.2e-53 212.2 155 69.7
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 4.2e-53 211.8 179 64.2
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 4.2e-53 211.8 154 70.1
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 5.5e-53 211.5 155 70.3
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 5.5e-53 211.5 155 70.3
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 7.2e-53 211.1 157 71.3
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 7.2e-53 211.1 157 71.3
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 9.4e-53 210.7 157 66.9
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.6e-52 209.9 157 70.7
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.6e-52 209.9 157 70.7
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 2.7e-52 209.1 176 65.3
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 3.6e-52 208.8 157 66.2
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 3.6e-52 208.8 177 62.1
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 6.1e-52 208.0 202 55.0
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 7.9e-52 207.6 216 55.1
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 7.9e-52 207.6 202 55.4
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 7.9e-52 207.6 157 70.1
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 7.9e-52 207.6 157 65.6
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 1.8e-51 206.5 157 70.1
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 2.3e-51 206.1 155 68.4
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 3.9e-51 205.3 184 62.5
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 6.7e-51 204.5 165 67.9
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 8.8e-51 204.1 199 60.3
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 8.8e-51 204.1 157 67.5
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 2.6e-50 202.6 211 57.3
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 5.7e-50 201.4 184 60.9
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 5.7e-50 201.4 190 59.5
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 7.4e-50 201.1 177 58.8
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 7.4e-50 201.1 147 69.4
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 9.7e-50 200.7 145 71.7
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 1.3e-49 200.3 145 71.0
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 1.7e-49 199.9 155 66.5
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 2.8e-49 199.1 182 57.1
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 2.8e-49 199.1 188 55.3
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 2.8e-49 199.1 157 68.2
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 4.8e-49 198.4 188 55.9
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 1.8e-48 196.4 156 64.1
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 3.1e-48 195.7 201 53.2
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 4.1e-48 195.3 156 62.8
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 4.1e-48 195.3 180 59.4
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 4.1e-48 195.3 155 63.9
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 4.1e-48 195.3 154 63.0
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 5.3e-48 194.9 145 70.3
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 7.0e-48 194.5 188 54.3
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 7.0e-48 194.5 202 54.0
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 2.0e-47 193.0 178 56.7
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 1.0e-46 190.7 176 56.8
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 1.0e-46 190.7 176 56.8
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 1.0e-46 190.7 176 56.8
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.9e-46 189.1 190 53.7
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 2.9e-46 189.1 157 65.6
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 3.8e-46 188.7 149 62.4
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 3.8e-46 188.7 149 62.4
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 8.5e-46 187.6 171 59.1
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 8.5e-46 187.6 171 59.1
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 7.2e-45 184.5 180 57.8
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 9.4e-45 184.1 136 67.6
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 9.4e-45 184.1 157 65.0
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 1.2e-44 183.7 179 59.2
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 1.6e-44 183.3 151 62.3
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 2.1e-44 183.0 146 64.4
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 2.7e-44 182.6 137 70.8
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 5.2e-43 178.3 125 75.2
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 2.6e-42 176.0 125 73.6
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 3.3e-42 175.6 125 72.8
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.3e-41 173.7 144 67.4
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 2.2e-41 172.9 125 73.6
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 2.4e-40 169.5 127 70.1
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 9.1e-40 167.5 193 53.4
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 1.2e-39 167.2 154 60.4
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 2.7e-39 166.0 157 54.8
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 7.7e-39 164.5 118 72.9
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 2.1e-36 156.4 137 59.9
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 6.1e-36 154.8 151 59.6
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 6.1e-36 154.8 151 59.6
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 9.8e-34 147.5 106 74.5
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 9.8e-34 147.5 106 74.5
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 3.7e-33 145.6 162 49.4
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 4.8e-33 145.2 160 48.8
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 7.0e-32 141.4 160 48.8
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 4.5e-31 138.7 157 46.5
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 1.3e-30 137.1 108 69.4
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 1.7e-30 136.7 201 41.8
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 8.0e-28 127.9 175 47.4
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 4.9e-25 118.6 193 40.9
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 1.8e-24 116.7 193 40.4
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 4.5e-23 112.1 183 40.4
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 3.4e-18 95.9 70 64.3
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 1.2e-12 77.4 184 29.9


User provided reference genes

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