Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G118000 Glycine max HOM05D007279 ORTHO05D009212 3.4e-113 411.8 219 100.0
Glyma.04G245200 Glycine max HOM05D007279 ORTHO05D009212 2.8e-107 392.1 219 96.3
Phvul.009G130400 Phaseolus vulgaris HOM05D007279 ORTHO05D009212 9.9e-97 357.1 219 90.4
Medtr3g088645 Medicago truncatula HOM05D007279 ORTHO05D009212 1.1e-95 353.6 215 80.5
VMungo1309G2060 Vigna mungo HOM05D007279 ORTHO05D009212 5.4e-95 351.3 219 87.7
arahy.Tifrunner.gnm1.ann1.03R76N Arachis hypogaea HOM05D007279 ORTHO05D009212 1.9e-92 342.8 222 79.7
arahy.Tifrunner.gnm1.ann1.G5JU44 Arachis hypogaea HOM05D007279 ORTHO05D009212 1.9e-92 342.8 222 79.7
Ca_16613_v3 Cicer arietinum L. HOM05D007279 ORTHO05D009212 1.6e-91 339.7 215 78.1
Psat5g084400 Pisum sativum HOM05D007279 ORTHO05D009212 6.2e-91 337.8 216 76.4
Lalb_Chr08g0241031 Lupinus albus HOM05D007279 ORTHO05D009212 2.0e-89 332.8 220 77.7
Lj1g0002247 Lotus japonicus HOM05D007279 ORTHO05D009212 1.9e-87 326.2 220 75.0
Cfa018422 Carpinus fangiana HOM05D007279 ORTHO05D009212 1.6e-83 313.2 214 79.9
Duzib093G1369 Durio zibethinus HOM05D007279 ORTHO05D009212 4.8e-83 311.6 217 73.7
COL.COLO4_33390 Corchorus olitorius HOM05D007279 ORTHO05D009212 1.4e-82 310.1 215 73.0
Dinv27265 Davidia involucrata HOM05D007279 ORTHO05D009212 6.9e-82 307.8 206 74.3
Prupe.1G488900 Prunus persica HOM05D007279 ORTHO05D009212 1.5e-81 306.6 214 72.0
PGR044G1698 Punica granatum HOM05D007279 ORTHO05D009212 1.7e-80 303.1 220 73.6
RcHm_v2.0_Chr6g0296781 Rosa chinensis HOM05D007279 ORTHO05D009212 1.7e-80 303.1 215 70.7
FvH4_2g27960 Fragaria vesca HOM05D007279 ORTHO05D009212 2.9e-80 302.4 216 71.3
TWI34G0215 Tripterygium wilfordii HOM05D007279 ORTHO05D009212 2.9e-80 302.4 217 71.4
Sabra05G0138700 Salix brachista HOM05D007279 ORTHO05D009212 8.4e-80 300.8 214 74.3
FAN27G1298 Fragaria x ananassa HOM05D007279 ORTHO05D009212 1.1e-79 300.4 216 70.8
FAN24G0438 Fragaria x ananassa HOM05D007279 ORTHO05D009212 1.4e-79 300.1 216 70.8
GSVIVG01008801001 Vitis vinifera HOM05D007279 ORTHO05D009212 1.4e-79 300.1 207 74.4
Gohir.D03G063100 Gossypium hirsutum HOM05D007279 ORTHO05D009212 1.9e-79 299.7 215 73.0
Gorai.013G108300 Gossypium raimondii HOM05D007279 ORTHO05D009212 1.9e-79 299.7 215 73.0
Potri.005G183000 Populus trichocarpa HOM05D007279 ORTHO05D009212 3.2e-79 298.9 208 73.1
FAN20G2640 Fragaria x ananassa HOM05D007279 ORTHO05D009212 4.2e-79 298.5 211 71.6
Gohir.A02G110900 Gossypium hirsutum HOM05D007279 ORTHO05D009212 9.3e-79 297.4 209 72.7
Manes.02G169000 Manihot esculenta HOM05D007279 ORTHO05D009212 3.5e-78 295.4 215 71.6
CSS0035764 Camellia sinensis var. sinensis HOM05D007279 ORTHO05D009212 1.7e-77 293.1 216 69.0
CiPaw.16G022500 Carya illinoinensis HOM05D007279 ORTHO05D009212 5.1e-77 291.6 215 74.9
QL09p032239 Quercus lobata HOM05D007279 ORTHO05D009212 5.6e-76 288.1 215 74.0
CANSAT25G0430 Cannabis sativa HOM05D007279 ORTHO05D009212 1.1e-74 283.9 219 68.0
Hma1.2p1_0880F.1_g231840 Hydrangea macrophylla HOM05D007279 ORTHO05D009212 1.1e-74 283.9 220 67.7
Eucgr.F03852 Eucalyptus grandis HOM05D007279 ORTHO05D009212 1.2e-73 280.4 213 66.2
MSTRG.1407 Avicennia marina HOM05D007279 ORTHO05D009212 2.0e-73 279.6 214 69.6
MD15G1133300 Malus domestica HOM05D007279 ORTHO05D009212 3.4e-73 278.9 203 70.4
Atru.chr13.1590 Acer truncatum HOM05D007279 ORTHO05D009212 9.9e-73 277.3 213 65.3
Lsat_1_v5_gn_1_7161 Lactuca sativa HOM05D007279 ORTHO05D009212 1.7e-72 276.6 211 67.8
ClCG09G021820 Citrullus lanatus HOM05D007279 ORTHO05D009212 2.9e-72 275.8 213 74.6
CAN.G405.7 Capsicum annuum HOM05D007279 ORTHO05D009212 4.9e-72 275.0 215 71.2
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 8.4e-72 274.2 197 69.0
EL10Ac1g01365 Beta vulgaris HOM05D007279 ORTHO05D009212 1.1e-71 273.9 210 65.2
AUR62007704 Chenopodium quinoa HOM05D007279 ORTHO05D009212 1.1e-71 273.9 210 64.3
Peaxi162Scf00066g00422 Petunia axillaris HOM05D007279 ORTHO05D009212 1.4e-71 273.5 215 70.2
Sed0026443 Sechium edule HOM05D007279 ORTHO05D009212 1.9e-71 273.1 215 71.2
Cc10_g13680 Coffea canephora HOM05D007279 ORTHO05D009212 4.2e-71 271.9 213 72.3
TAR628G0029 Trochodendron aralioides HOM05D007279 ORTHO05D009212 7.1e-71 271.2 208 72.1
MELO3C012712.2 Cucumis melo HOM05D007279 ORTHO05D009212 9.3e-71 270.8 215 66.5
CsaV3_7G022180 Cucumis sativus L. HOM05D007279 ORTHO05D009212 1.2e-70 270.4 218 65.1
Solyc04g057980.3 Solanum lycopersicum HOM05D007279 ORTHO05D009212 1.2e-70 270.4 215 71.2
AUR62013436 Chenopodium quinoa HOM05D007279 ORTHO05D009212 2.7e-70 269.2 210 64.3
Nitab4.5_0003485g0020 Nicotiana tabacum HOM05D007279 ORTHO05D009212 4.6e-70 268.5 216 69.0
Lj4A677T28 Lonicera japonica HOM05D007279 ORTHO05D009212 6.0e-70 268.1 207 65.7
Lj4A679T22 Lonicera japonica HOM05D007279 ORTHO05D009212 6.0e-70 268.1 207 65.2
Nitab4.5_0000317g0110 Nicotiana tabacum HOM05D007279 ORTHO05D009212 6.0e-70 268.1 214 71.0
Sabra02G0061000 Salix brachista HOM05D007279 ORTHO05D009212 6.0e-70 268.1 191 80.1
PGSC0003DMG400025319 Solanum tuberosum HOM05D007279 ORTHO05D009212 6.0e-70 268.1 215 70.2
Ciclev10002484m.g Citrus clementina HOM05D007279 ORTHO05D009212 1.3e-69 266.9 217 65.4
Sopen04g025840 Solanum pennellii HOM05D007279 ORTHO05D009212 1.8e-69 266.5 215 70.7
Migut.C01071 Erythranthe guttata HOM05D007279 ORTHO05D009212 6.7e-69 264.6 219 63.9
THA.LOC104808254 Tarenaya hassleriana HOM05D007279 ORTHO05D009212 6.7e-69 264.6 211 65.4
Rhsim02G0114000 Rhododendron simsii HOM05D007279 ORTHO05D009212 2.5e-68 262.7 219 63.0
Ah.05g169060 Amaranthus hybridus HOM05D007279 ORTHO05D009212 9.6e-68 260.8 210 63.3
HanXRQChr02g0045151 Helianthus annuus HOM05D007279 ORTHO05D009212 3.7e-67 258.8 219 63.9
Nn5g28445 Nelumbo nucifera HOM05D007279 ORTHO05D009212 4.8e-67 258.5 200 72.0
vmacro17341 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 6.2e-67 258.1 226 61.5
CARHR246340 Cardamine hirsuta HOM05D007279 ORTHO05D009212 1.4e-66 256.9 221 61.1
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 3.1e-66 255.8 216 63.4
Thhalv10026209m.g Eutrema salsugineum HOM05D007279 ORTHO05D009212 5.3e-66 255.0 213 61.0
Rhsim02G0113900 Rhododendron simsii HOM05D007279 ORTHO05D009212 5.3e-66 255.0 208 69.2
ECA247G0566 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.4e-65 252.3 147 80.3
Aa31LG6G14860 Aethionema arabicum HOM05D007279 ORTHO05D009212 1.0e-64 250.8 191 66.0
AT4G37925 Arabidopsis thaliana HOM05D007279 ORTHO05D009212 1.0e-64 250.8 212 61.3
DCAR_016660 Daucus carota HOM05D007279 ORTHO05D009212 1.3e-64 250.4 212 63.2
BcaC01g00366 Brassica carinata HOM05D007279 ORTHO05D009212 1.7e-64 250.0 213 59.2
unitig_46.g18082 Utricularia gibba HOM05D007279 ORTHO05D009212 1.7e-64 250.0 204 63.7
BcaB03g12324 Brassica carinata HOM05D007279 ORTHO05D009212 2.2e-64 249.6 213 59.2
C03p78920 Brassica napus HOM05D007279 ORTHO05D009212 2.2e-64 249.6 213 59.2
BolC3t20136H Brassica oleracea HOM05D007279 ORTHO05D009212 2.2e-64 249.6 213 59.2
A08p22940 Brassica napus HOM05D007279 ORTHO05D009212 2.9e-64 249.2 213 59.2
Sp7g35570 Schrenkiella parvula HOM05D007279 ORTHO05D009212 1.1e-63 247.3 208 62.0
AL7G12720 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 1.4e-63 246.9 212 60.4
Aqoxy6G00304 Aquilegia oxysepala HOM05D007279 ORTHO05D009212 1.9e-63 246.5 205 63.4
BraA08t34256Z Brassica rapa HOM05D007279 ORTHO05D009212 3.2e-63 245.7 213 58.2
MBI03_g13490_MAGBIO Magnolia biondii HOM05D007279 ORTHO05D009212 3.2e-63 245.7 198 72.2
PSO170G3576 Papaver somniferum HOM05D007279 ORTHO05D009212 1.2e-62 243.8 204 62.3
Carub.0007s0229 Capsella rubella HOM05D007279 ORTHO05D009212 2.7e-62 242.7 212 59.9
PSO528G0084 Papaver somniferum HOM05D007279 ORTHO05D009212 2.7e-62 242.7 204 61.3
Rhsim02G0113400 Rhododendron simsii HOM05D007279 ORTHO05D009212 1.3e-61 240.4 215 60.0
Potri.002G077600 Populus trichocarpa HOM05D007279 ORTHO05D009212 5.7e-60 235.0 178 71.3
ATR0681G064 Amborella trichopoda HOM05D007279 ORTHO05D009212 6.9e-58 228.0 137 78.8
Os04g0539000 Oryza sativa ssp. japonica HOM05D007279 ORTHO05D009212 2.2e-56 223.0 139 75.5
Zm00001eb075370 Zea mays HOM05D007279 ORTHO05D009212 1.9e-55 219.9 217 57.1
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 4.3e-52 208.8 194 59.8
SEGI_28724 Sequoiadendron giganteum HOM05D007279 ORTHO05D009212 3.7e-51 205.7 142 69.7
Thecc.08G133700 Theobroma cacao HOM05D007279 ORTHO05D009212 5.5e-47 191.8 156 71.2
TPR.G6347 Trifolium pratense HOM05D007279 ORTHO05D009212 1.4e-45 187.2 91 93.4
AL3G19570 Arabidopsis lyrata HOM05D007279 ORTHO05D009212 2.4e-42 176.4 142 63.4
Pp3c1_14910 Physcomitrium patens HOM05D007279 ORTHO05D009212 1.5e-41 173.7 133 62.4
CBR_g26037 Chara braunii HOM05D007279 ORTHO05D009212 4.5e-41 172.2 126 63.5
SMO339G0044 Selaginella moellendorffii HOM05D007279 ORTHO05D009212 2.2e-40 169.9 113 69.0
AagrBONN_evm.TU.Sc2ySwM_344.1177 Anthoceros agrestis HOM05D007279 ORTHO05D009212 3.3e-36 156.0 139 54.7
Mapoly0063s0013 Marchantia polymorpha HOM05D007279 ORTHO05D009212 1.3e-35 154.1 112 64.3
vmacro17338 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 2.4e-34 149.8 125 64.0
TAR623G1519 Trochodendron aralioides HOM05D007279 ORTHO05D009212 1.7e-32 143.7 182 46.2
vmacro17312 Vaccinium macrocarpon HOM05D007279 ORTHO05D009212 2.0e-28 130.2 117 59.8
SalBow7G1271 Salvia bowleyana HOM05D007279 ORTHO05D009212 3.1e-26 122.9 200 39.5
Zm00001eb427570 Zea mays HOM05D007279 ORTHO05D009212 5.0e-24 115.5 73 71.2
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 4.7e-14 82.4 140 40.0


User provided reference genes

Program Settings