Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G115900 Glycine max HOM05D007332 ORTHO05D009297 1.1e-93 346.7 174 100.0
Glyma.04G246900 Glycine max HOM05D007332 ORTHO05D009297 1.4e-77 293.1 177 88.1
Phvul.009G128000 Phaseolus vulgaris HOM05D007332 ORTHO05D009297 2.1e-73 279.3 166 84.9
VMungo1309G0081 Vigna mungo HOM05D007332 ORTHO05D009297 2.8e-70 268.9 166 81.9
Lj1g0005314 Lotus japonicus HOM05D007332 ORTHO05D009297 7.7e-60 234.2 167 74.9
Psat5g085840 Pisum sativum HOM05D007332 ORTHO05D009297 1.4e-58 229.9 163 71.8
TPR.G13457 Trifolium pratense HOM05D007332 ORTHO05D009297 3.2e-58 228.8 160 72.5
Medtr3g088400 Medicago truncatula HOM05D007332 ORTHO05D009297 9.7e-55 217.2 165 71.5
arahy.Tifrunner.gnm1.ann1.ILK6IZ Arachis hypogaea HOM05D007332 ORTHO05D009297 5.3e-45 184.9 183 59.0
Ca_16594_v3 Cicer arietinum L. HOM05D007332 ORTHO05D009297 6.5e-43 177.9 149 65.1
TWI34G0633 Tripterygium wilfordii HOM05D007332 ORTHO05D009297 1.7e-38 163.3 185 50.3
Cfa018560 Carpinus fangiana HOM05D007332 ORTHO05D009297 2.2e-38 162.9 177 54.2
Atru.chr13.1537 Acer truncatum HOM05D007332 ORTHO05D009297 2.8e-38 162.5 184 52.7
Manes.02G166600 Manihot esculenta HOM05D007332 ORTHO05D009297 8.2e-38 161.0 185 52.4
Ciclev10002610m.g Citrus clementina HOM05D007332 ORTHO05D009297 1.1e-37 160.6 184 50.5
Potri.002G080200 Populus trichocarpa HOM05D007332 ORTHO05D009297 1.3e-35 153.7 210 46.2
QL09p033201 Quercus lobata HOM05D007332 ORTHO05D009297 1.7e-35 153.3 189 48.7
CiPaw.15G033700 Carya illinoinensis HOM05D007332 ORTHO05D009297 3.8e-35 152.1 189 51.3
Potri.005G181200 Populus trichocarpa HOM05D007332 ORTHO05D009297 3.8e-35 152.1 188 47.3
Sabra02G0062700 Salix brachista HOM05D007332 ORTHO05D009297 5.0e-35 151.8 174 51.1
arahy.Tifrunner.gnm1.ann1.34D5TH Arachis hypogaea HOM05D007332 ORTHO05D009297 6.5e-35 151.4 160 55.6
Hma1.2p1_0542F.1_g174970 Hydrangea macrophylla HOM05D007332 ORTHO05D009297 9.4e-34 147.5 184 49.5
Dinv27272 Davidia involucrata HOM05D001470 ORTHO05D006430 2.7e-33 146.0 183 48.6
arahy.Tifrunner.gnm1.ann1.396V4Q Arachis hypogaea HOM05D007332 ORTHO05D009297 8.0e-33 144.4 159 54.1
COL.COLO4_03954 Corchorus olitorius HOM05D007332 ORTHO05D009297 8.0e-33 144.4 205 44.4
Duzib093G1986 Durio zibethinus HOM05D007332 ORTHO05D009297 8.0e-33 144.4 197 47.7
FAN20G0761 Fragaria x ananassa HOM05D007332 ORTHO05D009297 1.5e-31 140.2 193 49.2
FvH4_2g27560 Fragaria vesca HOM05D007332 ORTHO05D009297 3.4e-31 139.0 197 47.7
FAN24G1344 Fragaria x ananassa HOM05D007332 ORTHO05D009297 3.4e-31 139.0 197 47.7
Duzib116G0046 Durio zibethinus HOM05D007332 ORTHO05D009297 1.3e-30 137.1 192 44.8
FAN27G1631 Fragaria x ananassa HOM05D007332 ORTHO05D009297 1.3e-30 137.1 193 48.7
Gohir.A05G237300 Gossypium hirsutum HOM05D007332 ORTHO05D009297 1.3e-30 137.1 194 41.8
Gorai.009G248200 Gossypium raimondii HOM05D007332 ORTHO05D009297 2.2e-30 136.3 194 41.8
Gohir.D05G239400 Gossypium hirsutum HOM05D007332 ORTHO05D009297 6.3e-30 134.8 194 41.2
RcHm_v2.0_Chr6g0296401 Rosa chinensis HOM05D007332 ORTHO05D009297 6.3e-30 134.8 188 51.1
CSS0048102 Camellia sinensis var. sinensis HOM05D007332 ORTHO05D009297 2.4e-29 132.9 206 42.2
ClCG11G015900 Citrullus lanatus HOM05D007332 ORTHO05D009297 3.1e-29 132.5 166 48.2
MELO3C010504.2 Cucumis melo HOM05D007332 ORTHO05D009297 9.1e-29 131.0 177 46.3
PGR044G1395 Punica granatum HOM05D007332 ORTHO05D009297 1.6e-28 130.2 196 43.4
Nitab4.5_0006720g0020 Nicotiana tabacum HOM05D007332 ORTHO05D009297 5.9e-28 128.3 192 46.4
Peaxi162Scf00310g00043 Petunia axillaris HOM05D007332 ORTHO05D009297 1.0e-27 127.5 192 48.4
CAN.G1486.2 Capsicum annuum HOM05D007332 ORTHO05D009297 2.9e-27 125.9 187 44.4
Cc10_g12430 Coffea canephora HOM05D007332 ORTHO05D009297 6.5e-27 124.8 209 44.0
Gohir.A06G046800 Gossypium hirsutum HOM05D007332 ORTHO05D009297 2.5e-26 122.9 173 45.7
Gorai.010G052700 Gossypium raimondii HOM05D007332 ORTHO05D009297 2.5e-26 122.9 173 45.7
Nitab4.5_0000111g0100 Nicotiana tabacum HOM05D007332 ORTHO05D009297 2.5e-26 122.9 190 45.3
CsaV3_4G028070 Cucumis sativus L. HOM05D007332 ORTHO05D009297 1.2e-25 120.6 166 45.2
Eucgr.F04333 Eucalyptus grandis HOM05D007332 ORTHO05D009297 1.6e-25 120.2 201 40.8
Dinv14654 Davidia involucrata HOM05D007332 ORTHO05D009297 2.1e-25 119.8 167 44.9
Sopen03g032530 Solanum pennellii HOM05D007332 ORTHO05D009297 4.7e-25 118.6 194 43.8
TAR381G0705 Trochodendron aralioides HOM05D007332 ORTHO05D009297 8.0e-25 117.9 166 45.2
MSTRG.1422 Avicennia marina HOM05D007332 ORTHO05D009297 2.3e-24 116.3 189 43.9
Prupe.1G492300 Prunus persica HOM05D007332 ORTHO05D009297 3.0e-24 115.9 189 41.8
PGSC0003DMG400024564 Solanum tuberosum HOM05D007332 ORTHO05D009297 3.0e-24 115.9 185 42.7
Solyc03g113480.1 Solanum lycopersicum HOM05D007332 ORTHO05D009297 4.0e-24 115.5 194 42.8
MD15G1344600 Malus domestica HOM05D007332 ORTHO05D009297 8.9e-24 114.4 199 43.2
SalBow7G3495 Salvia bowleyana HOM05D007332 ORTHO05D009297 4.4e-23 112.1 169 46.2
Sabra05G0137200 Salix brachista HOM05D007332 ORTHO05D009297 1.3e-22 110.5 178 39.9
Hma1.2p1_0542F.1_g175020 Hydrangea macrophylla HOM05D007332 ORTHO05D009297 6.3e-22 108.2 150 45.3
Nn1g08887 Nelumbo nucifera HOM05D007332 ORTHO05D009297 8.3e-22 107.8 195 40.0
FAN15G1303 Fragaria x ananassa HOM05D007332 ORTHO05D009297 3.1e-21 105.9 171 43.3
Thecc.08G130400 Theobroma cacao HOM05D007332 ORTHO05D009297 4.5e-20 102.1 197 37.1
PGSC0003DMG400006046 Solanum tuberosum HOM05D007332 ORTHO05D009297 5.0e-19 98.6 171 42.1
Migut.C01053 Erythranthe guttata HOM05D007332 ORTHO05D009297 1.5e-18 97.1 182 38.5
ECA232G0093 Erigeron canadensis HOM05D007332 ORTHO05D009297 3.3e-18 95.9 167 41.3
THA.LOC104813672 Tarenaya hassleriana HOM05D007332 ORTHO05D009297 4.3e-18 95.5 221 34.8
Nn5g28415 Nelumbo nucifera HOM05D007332 ORTHO05D009297 4.7e-17 92.0 157 42.0
HanXRQChr09g0260291 Helianthus annuus HOM05D007332 ORTHO05D009297 6.1e-17 91.7 171 38.0
BolC6t40174H Brassica oleracea HOM05D007332 ORTHO05D009297 8.0e-17 91.3 229 34.5
A07p42920 Brassica napus HOM05D007332 ORTHO05D009297 2.3e-16 89.7 233 33.9
C06p51540 Brassica napus HOM05D007332 ORTHO05D009297 2.3e-16 89.7 229 34.1
BcaB03g15951 Brassica carinata HOM05D007332 ORTHO05D009297 3.0e-16 89.4 227 34.4
BraA07t31813Z Brassica rapa HOM05D007332 ORTHO05D009297 5.2e-16 88.6 229 33.6
DCAR_003566 Daucus carota HOM05D007332 ORTHO05D009297 6.8e-16 88.2 191 38.7
C02p17420 Brassica napus HOM05D007332 ORTHO05D009297 1.5e-15 87.0 206 35.9
BolC2t07856H Brassica oleracea HOM05D007332 ORTHO05D009297 1.5e-15 87.0 206 35.9
BcaC08g47611 Brassica carinata HOM05D007332 ORTHO05D009297 2.0e-15 86.7 226 33.6
SGA_v2.0_scaffold52G18934 Striga asiatica HOM05D007332 ORTHO05D009297 2.6e-15 86.3 181 41.4
CARHR070880 Cardamine hirsuta HOM05D007332 ORTHO05D009297 5.8e-15 85.1 233 33.0
AL2G37600 Arabidopsis lyrata HOM05D007332 ORTHO05D009297 7.5e-15 84.7 237 32.1
BcaB05g25043 Brassica carinata HOM05D007332 ORTHO05D009297 1.3e-14 84.0 237 32.5
AT1G77400 Arabidopsis thaliana HOM05D007332 ORTHO05D009297 1.7e-14 83.6 229 33.2
Lalb_Chr17g0343611 Lupinus albus HOM05D007332 ORTHO05D009297 1.7e-14 83.6 170 40.0
Lsat_1_v5_gn_4_74261 Lactuca sativa HOM05D007332 ORTHO05D009297 2.9e-14 82.8 169 37.9
Sp5g32550 Schrenkiella parvula HOM05D007332 ORTHO05D009297 4.9e-14 82.0 221 33.0
Actinidia15225 Actinidia chinensis HOM05D007332 ORTHO05D009297 6.4e-14 81.6 106 47.2
BcaC08g47610 Brassica carinata HOM05D007332 ORTHO05D009297 6.4e-14 81.6 214 32.2
Carub.0002s2429 Capsella rubella HOM05D007332 ORTHO05D009297 8.3e-14 81.3 234 31.6
Thhalv10019445m.g Eutrema salsugineum HOM05D007332 ORTHO05D009297 7.0e-13 78.2 233 31.8
Sed0015452 Sechium edule HOM05D007332 ORTHO05D009297 7.8e-12 74.7 129 38.8
MBI06_g33108_MAGBIO Magnolia biondii HOM05D007332 ORTHO05D009297 2.3e-11 73.2 175 34.3
Aa31LG4G7420 Aethionema arabicum HOM05D007332 ORTHO05D009297 3.9e-11 72.4 236 30.5
BcaC03g15733 Brassica carinata HOM05D007332 ORTHO05D009297 5.0e-11 72.0 228 31.6
CANSAT25G2745 Cannabis sativa HOM05D007332 ORTHO05D009297 1.6e-09 67.0 172 35.5
BolC2t09481H Brassica oleracea HOM05D007332 ORTHO05D009297 3.1e-08 62.8 223 30.0
Aqoxy5G02371 Aquilegia oxysepala HOM05D007332 ORTHO05D009297 9.8e-07 57.8 128 33.6
Ah.03g139000 Amaranthus hybridus HOM05D007332 ORTHO05D009297 8.3e-06 54.7 162 34.0


User provided reference genes

Program Settings