Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G115700 Glycine max HOM05D006084 ORTHO05D007449 7.5e-65 250.4 127 100.0
Glyma.04G247000 Glycine max HOM05D006084 ORTHO05D007449 3.2e-63 245.0 127 96.9
Phvul.009G127800 Phaseolus vulgaris HOM05D006084 ORTHO05D007449 1.1e-60 236.5 127 92.1
Ca_16579_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 9.6e-52 206.8 126 80.2
Medtr3g088470 Medicago truncatula HOM05D006084 ORTHO05D007449 1.2e-51 206.5 126 80.2
TPR.G13476 Trifolium pratense HOM05D006084 ORTHO05D007449 4.0e-50 201.4 126 77.8
Lj1g0023236 Lotus japonicus HOM05D006084 ORTHO05D007449 6.9e-50 200.7 126 75.4
Lalb_Chr10g0093921 Lupinus albus HOM05D006084 ORTHO05D007449 3.2e-47 191.8 130 75.4
arahy.Tifrunner.gnm1.ann1.2LS7ZQ Arachis hypogaea HOM05D006084 ORTHO05D007449 2.7e-46 188.7 130 75.4
Dinv33481 Davidia involucrata HOM05D006084 ORTHO05D007449 6.0e-46 187.6 127 71.7
arahy.Tifrunner.gnm1.ann1.48HX9C Arachis hypogaea HOM05D006084 ORTHO05D007449 7.8e-46 187.2 130 74.6
Atru.chr6.2220 Acer truncatum HOM05D006084 ORTHO05D007449 1.3e-45 186.4 121 74.4
Manes.17G116000 Manihot esculenta HOM05D006084 ORTHO05D007449 1.7e-45 186.0 123 74.8
TAR371G1194 Trochodendron aralioides HOM05D006084 ORTHO05D007449 1.7e-45 186.0 124 71.8
arahy.Tifrunner.gnm1.ann1.DMWP0X Arachis hypogaea HOM05D006084 ORTHO05D007449 3.0e-45 185.3 130 73.8
QL02p076043 Quercus lobata HOM05D006084 ORTHO05D007449 3.0e-45 185.3 123 68.3
QL02p076078 Quercus lobata HOM05D006084 ORTHO05D007449 3.0e-45 185.3 123 68.3
Cfa007418 Carpinus fangiana HOM05D006084 ORTHO05D007449 1.1e-44 183.3 123 69.9
Prupe.3G286100 Prunus persica HOM05D006084 ORTHO05D007449 1.5e-44 183.0 118 73.7
Actinidia35746 Actinidia chinensis HOM05D006084 ORTHO05D007449 3.3e-44 181.8 126 69.8
Haze_14684 Corylus avellana HOM05D006084 ORTHO05D007449 3.3e-44 181.8 122 69.7
Eucgr.I01785 Eucalyptus grandis HOM05D006084 ORTHO05D007449 3.3e-44 181.8 123 69.9
Thecc.04G011100 Theobroma cacao HOM05D006084 ORTHO05D007449 3.3e-44 181.8 119 73.1
ECA238G3069 Erigeron canadensis HOM05D006084 ORTHO05D007449 4.3e-44 181.4 127 70.9
CiPaw.03G039200 Carya illinoinensis HOM05D006084 ORTHO05D007449 9.6e-44 180.3 123 69.1
HanXRQChr07g0198791 Helianthus annuus HOM05D006084 ORTHO05D007449 9.6e-44 180.3 124 71.0
CSS0000489 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 1.6e-43 179.5 123 71.5
CSS0035017 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 1.6e-43 179.5 123 71.5
MD17G1033600 Malus domestica HOM05D006084 ORTHO05D007449 1.6e-43 179.5 118 70.3
Potri.001G349500 Populus trichocarpa HOM05D006084 ORTHO05D007449 1.6e-43 179.5 124 69.4
RcHm_v2.0_Chr2g0172221 Rosa chinensis HOM05D006084 ORTHO05D007449 1.6e-43 179.5 120 70.8
CDE08G0643 Ceratophyllum demersum HOM05D006084 ORTHO05D007449 2.1e-43 179.1 124 70.2
Aqoxy3G02941 Aquilegia oxysepala HOM05D006084 ORTHO05D007449 2.8e-43 178.7 123 69.1
Gohir.A07G221200 Gossypium hirsutum HOM05D006084 ORTHO05D007449 2.8e-43 178.7 119 68.9
Gohir.D07G227900 Gossypium hirsutum HOM05D006084 ORTHO05D007449 6.2e-43 177.6 119 69.7
HanXRQChr14g0450361 Helianthus annuus HOM05D006084 ORTHO05D007449 8.1e-43 177.2 124 69.4
Rhsim08G0053800 Rhododendron simsii HOM05D006084 ORTHO05D007449 1.8e-42 176.0 123 69.9
Hma1.2p1_0846F.1_g227700 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 5.3e-42 174.5 123 69.1
Sed0018290 Sechium edule HOM05D006084 ORTHO05D007449 5.3e-42 174.5 124 65.3
PGSC0003DMG400000490 Solanum tuberosum HOM05D006084 ORTHO05D007449 5.3e-42 174.5 119 70.6
CsaV3_5G027340 Cucumis sativus L. HOM05D006084 ORTHO05D007449 1.2e-41 173.3 124 65.3
ATR0730G058 Amborella trichopoda HOM05D006084 ORTHO05D007449 1.5e-41 172.9 124 68.5
ATR1096G027 Amborella trichopoda HOM05D006084 ORTHO05D007449 1.5e-41 172.9 123 68.3
Sopen02g031550 Solanum pennellii HOM05D006084 ORTHO05D007449 1.5e-41 172.9 119 71.4
CANSAT64G0964 Cannabis sativa HOM05D006084 ORTHO05D007449 2.6e-41 172.2 123 65.9
CAN.G206.22 Capsicum annuum HOM05D006084 ORTHO05D007449 3.4e-41 171.8 118 69.5
PGR142G2538 Punica granatum HOM05D006084 ORTHO05D007449 3.4e-41 171.8 127 65.4
MELO3C005689.2 Cucumis melo HOM05D006084 ORTHO05D007449 4.5e-41 171.4 124 65.3
FvH4_6g50830 Fragaria vesca HOM05D006084 ORTHO05D007449 4.5e-41 171.4 121 66.9
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 4.5e-41 171.4 121 66.9
Cc07_g02120 Coffea canephora HOM05D006084 ORTHO05D007449 5.8e-41 171.0 124 67.7
HPP92_022049 Vanilla planifolia HOM05D006084 ORTHO05D007449 5.8e-41 171.0 123 68.3
GSVIVG01032459001 Vitis vinifera HOM05D006084 ORTHO05D007449 9.9e-41 170.2 118 70.3
FAN14G2625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.3e-40 169.9 121 66.1
Oeu004718.1 Olea europaea HOM05D006084 ORTHO05D007449 1.3e-40 169.9 119 73.1
A02p02680 Brassica napus HOM05D006084 ORTHO05D007449 2.2e-40 169.1 124 66.1
BraA02t05237Z Brassica rapa HOM05D006084 ORTHO05D007449 2.2e-40 169.1 124 66.1
arahy.Tifrunner.gnm1.ann1.GQ5XJ3 Arachis hypogaea HOM05D006084 ORTHO05D007449 4.9e-40 167.9 136 64.7
Hund02345 Selenicereus undatus HOM05D006084 ORTHO05D007449 6.4e-40 167.5 124 63.7
Sc03g0007970 Simmondsia chinensis HOM05D006084 ORTHO05D007449 6.4e-40 167.5 123 63.4
BcaNung03101 Brassica carinata HOM05D006084 ORTHO05D007449 8.4e-40 167.2 120 66.7
FAN05G5625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.1e-39 166.8 119 66.4
Hma1.2p1_0056F.1_g031653 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 1.9e-39 166.0 105 73.3
COL.COLO4_28991 Corchorus olitorius HOM05D006084 ORTHO05D007449 3.2e-39 165.2 135 63.0
THA.LOC104821076 Tarenaya hassleriana HOM05D006084 ORTHO05D007449 3.2e-39 165.2 124 62.9
Sp6g29330 Schrenkiella parvula HOM05D006084 ORTHO05D007449 4.2e-39 164.9 127 63.0
Migut.H00108 Erythranthe guttata HOM05D006084 ORTHO05D007449 5.4e-39 164.5 119 68.1
AL6G25480 Arabidopsis lyrata HOM05D006084 ORTHO05D007449 9.3e-39 163.7 124 64.5
Thhalv10015025m.g Eutrema salsugineum HOM05D006084 ORTHO05D007449 9.3e-39 163.7 126 64.3
Hma1.2p1_1415F.1_g281960 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 9.3e-39 163.7 105 73.3
BcaC03g13452 Brassica carinata HOM05D006084 ORTHO05D007449 1.2e-38 163.3 124 63.7
C02p07250 Brassica napus HOM05D006084 ORTHO05D007449 1.2e-38 163.3 124 63.7
BolC2t06657H Brassica oleracea HOM05D006084 ORTHO05D007449 1.2e-38 163.3 124 63.7
Carub.0006s1288 Capsella rubella HOM05D006084 ORTHO05D007449 1.2e-38 163.3 124 64.5
A03p06720 Brassica napus HOM05D006084 ORTHO05D007449 2.1e-38 162.5 124 62.9
PSO210G7688 Papaver somniferum HOM05D006084 ORTHO05D007449 2.7e-38 162.2 122 63.9
TWI12G0619 Tripterygium wilfordii HOM05D006084 ORTHO05D007449 3.5e-38 161.8 123 64.2
MSTRG.3166 Avicennia marina HOM05D006084 ORTHO05D007449 4.6e-38 161.4 119 63.9
Os10g0395500 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 6.0e-38 161.0 127 59.8
AT5G14710 Arabidopsis thaliana HOM05D006084 ORTHO05D007449 7.9e-38 160.6 124 62.9
BraA03t10005Z Brassica rapa HOM05D006084 ORTHO05D007449 7.9e-38 160.6 124 62.9
PSO566G0352 Papaver somniferum HOM05D006084 ORTHO05D007449 7.9e-38 160.6 121 63.6
CARHR198600 Cardamine hirsuta HOM05D006084 ORTHO05D007449 1.3e-37 159.8 124 62.1
BcaB01g05101 Brassica carinata HOM05D006084 ORTHO05D007449 1.8e-37 159.5 124 62.1
C03p07740 Brassica napus HOM05D006084 ORTHO05D007449 1.8e-37 159.5 124 62.1
BolC3t13274H Brassica oleracea HOM05D006084 ORTHO05D007449 1.8e-37 159.5 124 62.1
PSO782G1469 Papaver somniferum HOM05D006084 ORTHO05D007449 1.8e-37 159.5 122 63.1
Peaxi162Scf00129g01228 Petunia axillaris HOM05D006084 ORTHO05D007449 1.8e-37 159.5 105 70.5
Aa31LG11G14750 Aethionema arabicum HOM05D006084 ORTHO05D007449 2.3e-37 159.1 124 63.7
ClCG09G019010 Citrullus lanatus HOM05D006084 ORTHO05D007449 6.7e-37 157.5 146 53.4
EL10Ac3g07214 Beta vulgaris HOM05D006084 ORTHO05D007449 8.7e-37 157.1 113 66.4
unitig_746.g26552 Utricularia gibba HOM05D006084 ORTHO05D007449 1.5e-36 156.4 119 62.2
FAN09G3162 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.9e-36 156.0 106 67.9
Zm00001eb048120 Zea mays HOM05D006084 ORTHO05D007449 2.5e-36 155.6 127 59.1
BcaC04g19017 Brassica carinata HOM05D006084 ORTHO05D007449 4.3e-36 154.8 113 66.4
ClCG00G003490 Citrullus lanatus HOM05D006084 ORTHO05D007449 2.1e-35 152.5 144 52.8
SGA_v2.0_scaffold2848G54225 Striga asiatica HOM05D006084 ORTHO05D007449 3.7e-35 151.8 119 61.3
Gorai.001G262800 Gossypium raimondii HOM05D006084 ORTHO05D007449 4.8e-35 151.4 102 69.6
MBI19_g17406_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 7.6e-33 144.1 130 56.9
Nn3g16859 Nelumbo nucifera HOM05D006084 ORTHO05D007449 7.6e-33 144.1 89 75.3
C09p62430 Brassica napus HOM05D006084 ORTHO05D007449 9.9e-33 143.7 117 59.8
Mapoly0005s0179 Marchantia polymorpha HOM05D006084 ORTHO05D007449 3.8e-32 141.7 120 56.7
Pp3c26_1260 Physcomitrium patens HOM05D006084 ORTHO05D007449 6.4e-32 141.0 132 50.8
Sabra16G0228900 Salix brachista HOM05D006084 ORTHO05D007449 6.4e-32 141.0 216 40.3
BolC9t59081H Brassica oleracea HOM05D006084 ORTHO05D007449 8.4e-32 140.6 117 59.0
MBI19_g07248_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 2.4e-31 139.0 132 56.1
SHI16396 Sapria himalayana HOM05D006084 ORTHO05D007449 2.4e-31 139.0 101 61.4
Cpa.g.c30698.2 Carica papaya HOM05D006084 ORTHO05D007449 4.2e-31 138.3 88 72.7
Lsat_1_v5_gn_2_91880 Lactuca sativa HOM05D006084 ORTHO05D007449 4.2e-31 138.3 124 58.1
AUR62031990 Chenopodium quinoa HOM05D006084 ORTHO05D007449 6.0e-30 134.4 89 71.9
Nitab4.5_0007141g0020 Nicotiana tabacum HOM05D006084 ORTHO05D007449 1.3e-29 133.3 107 61.7
SMO367G0706 Selaginella moellendorffii HOM05D006084 ORTHO05D007449 3.9e-29 131.7 105 61.9
Solyc02g086780.4 Solanum lycopersicum HOM05D006084 ORTHO05D007449 7.4e-28 127.5 81 76.5
Duzib264G1216 Durio zibethinus HOM05D006084 ORTHO05D007449 6.2e-27 124.4 83 68.7
DCAR_011237 Daucus carota HOM05D006084 ORTHO05D007449 1.8e-26 122.9 73 82.2
Ca_03224_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 3.1e-26 122.1 75 77.3
Nitab4.5_0006281g0070 Nicotiana tabacum HOM05D006084 ORTHO05D007449 4.5e-25 118.2 85 70.6
CBR_g5628 Chara braunii HOM05D006084 ORTHO05D007449 1.3e-24 116.7 126 46.0
Ciclev10017692m.g Citrus clementina HOM05D006084 ORTHO05D007449 1.9e-23 112.8 68 73.5
MELO3C033557.2 Cucumis melo HOM05D006084 ORTHO05D007449 1.9e-20 102.8 95 54.7
Cre13.g571000 Chlamydomonas reinhardtii HOM05D006084 ORTHO05D007449 2.2e-19 99.4 117 41.0
arahy.Tifrunner.gnm1.ann1.2H702Y Arachis hypogaea HOM05D006084 ORTHO05D007449 8.2e-19 97.4 61 77.0
Os01g0339600 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 1.1e-18 97.1 73 63.0
AUR62030334 Chenopodium quinoa HOM05D006084 ORTHO05D007449 1.4e-18 96.7 73 60.3
BraA10t44460Z Brassica rapa HOM05D006084 ORTHO05D007449 7.6e-17 90.9 89 52.8
AagrBONN_evm.TU.Sc2ySwM_228.3157 Anthoceros agrestis HOM05D006084 ORTHO05D007449 2.9e-16 89.0 88 46.6
A10p23960 Brassica napus HOM05D006084 ORTHO05D007449 3.8e-08 62.0 149 31.5
MCO07G269 Micromonas commoda HOM05D006084 ORTHO05D007449 5.0e-08 61.6 109 34.9
Dinv35076 Davidia involucrata HOM05D006084 ORTHO05D007449 7.2e-07 57.8 45 57.8


User provided reference genes

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