Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 3.3e-129 465.3 280 100.0
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 1.9e-116 422.9 283 80.9
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 1.9e-97 359.8 284 69.7
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 9.7e-89 330.9 282 63.8
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 1.3e-85 320.5 282 62.4
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 7.7e-78 294.7 285 58.9
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 8.5e-77 291.2 288 57.3
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 8.8e-74 281.2 226 65.9
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 1.2e-65 254.2 284 53.2
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 3.5e-62 242.7 278 51.1
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 8.8e-58 228.0 257 51.4
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 2.7e-54 216.5 288 45.1
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 3.5e-54 216.1 279 44.4
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 1.9e-52 210.3 281 46.3
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 1.8e-50 203.8 285 43.5
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 1.5e-49 200.7 279 42.3
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 2.9e-48 196.4 270 44.1
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 1.8e-47 193.7 279 41.2
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 2.0e-46 190.3 275 44.0
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 1.0e-45 188.0 274 43.8
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 1.3e-45 187.6 274 43.8
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 2.9e-45 186.4 274 43.8
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 7.3e-44 181.8 269 43.9
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 1.6e-43 180.6 287 42.2
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 1.2e-41 174.5 118 72.0
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 2.0e-41 173.7 282 39.0
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 9.8e-41 171.4 280 38.6
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 9.8e-41 171.4 281 40.9
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 1.3e-40 171.0 284 40.1
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 1.1e-39 167.9 276 38.8
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 1.9e-39 167.2 271 40.2
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 2.0e-38 163.7 118 63.6
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 6.0e-38 162.2 273 41.4
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 1.7e-37 160.6 266 39.1
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 3.9e-37 159.5 247 41.7
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 3.6e-35 152.9 245 41.2
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 3.6e-35 152.9 266 41.4
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 1.1e-34 151.4 281 37.4
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 3.4e-33 146.4 227 38.8
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 9.8e-33 144.8 286 35.3
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 2.2e-32 143.7 275 38.2
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 2.9e-32 143.3 283 45.6
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 1.7e-29 134.0 279 34.8
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 1.1e-28 131.3 279 34.8
MSTRG.1426 Avicennia marina HOM05D005772 ORTHO05D006468 2.5e-28 130.2 282 37.6
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 3.3e-28 129.8 255 36.9
VMungo1309G3162 Vigna mungo HOM05D005772 ORTHO05D006468 1.6e-27 127.5 122 61.5
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 6.2e-27 125.6 271 34.7
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 2.3e-26 123.6 118 47.5
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 8.9e-26 121.7 280 34.6
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 4.4e-25 119.4 271 40.2
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 4.4e-25 119.4 279 30.8
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 4.4e-25 119.4 245 34.7
Medtr3g088090 Medicago truncatula HOM05D005772 ORTHO05D006468 7.6e-25 118.6 123 58.5
BcaC05g26092 Brassica carinata HOM05D005772 ORTHO05D006468 1.1e-23 114.8 282 30.5
Oeu009481.1 Olea europaea HOM05D005772 ORTHO05D006468 1.1e-23 114.8 279 46.6
Nitab4.5_0004208g0030 Nicotiana tabacum HOM05D005772 ORTHO05D006468 5.4e-23 112.5 267 32.6
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 7.1e-23 112.1 110 47.3
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 9.2e-23 111.7 249 34.1
Atru.chr13.1514 Acer truncatum HOM05D005772 ORTHO05D006468 2.7e-22 110.2 222 40.1
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 6.0e-22 109.0 117 47.9
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 1.0e-21 108.2 117 47.9
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 1.3e-21 107.8 105 51.4
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 3.0e-21 106.7 117 46.2
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 3.9e-21 106.3 117 46.2
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 3.9e-21 106.3 117 46.2
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 5.1e-21 105.9 119 46.2
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 6.6e-21 105.5 117 48.7
A06p17810 Brassica napus HOM05D005772 ORTHO05D006468 8.6e-21 105.1 277 30.7
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 1.5e-20 104.4 117 45.3
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 1.5e-20 104.4 118 45.8
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 2.5e-20 103.6 117 45.3
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 2.5e-20 103.6 117 45.3
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 4.3e-20 102.8 117 44.4
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 4.3e-20 102.8 117 46.2
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 4.3e-20 102.8 117 47.0
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 9.6e-20 101.7 116 44.0
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.2e-19 101.3 116 45.7
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.2e-19 101.3 116 45.7
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 2.1e-19 100.5 116 44.8
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 2.1e-19 100.5 117 47.0
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 2.1e-19 100.5 240 31.7
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 6.2e-19 99.0 117 42.7
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 6.2e-19 99.0 117 42.7
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 8.1e-19 98.6 277 29.6
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 1.4e-18 97.8 117 44.4
Solyc11g017475.1 Solanum lycopersicum HOM05D005772 ORTHO05D006468 1.4e-18 97.8 284 29.2
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 1.8e-18 97.4 116 40.5
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 1.8e-18 97.4 117 46.2
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 2.0e-17 94.0 118 42.4
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 4.4e-17 92.8 118 44.9
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 5.8e-17 92.4 117 42.7
SalBow5G3743 Salvia bowleyana HOM05D005772 ORTHO05D006468 1.3e-16 91.3 284 32.4
CSS0004874 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 2.9e-16 90.1 117 41.0
SalBow5G0344 Salvia bowleyana HOM05D005772 ORTHO05D006468 2.9e-16 90.1 284 32.4
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 8.4e-16 88.6 117 40.2
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 1.9e-15 87.4 117 39.3
unitig_22.g6227 Utricularia gibba HOM05D005772 ORTHO05D006468 4.2e-15 86.3 65 55.4
Rhsim06G0101700 Rhododendron simsii HOM05D005772 ORTHO05D006468 5.4e-15 85.9 201 33.3
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 7.1e-15 85.5 104 41.3
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 2.1e-14 84.0 124 38.7
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 3.5e-14 83.2 220 30.9
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 4.6e-14 82.8 120 40.0
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 6.0e-14 82.4 280 30.0
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 7.8e-14 82.0 102 40.2
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 7.8e-14 82.0 281 27.8
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 7.8e-14 82.0 234 32.9
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 1.0e-13 81.6 116 35.3
Sabra05G0136400 Salix brachista HOM05D005772 ORTHO05D006468 5.1e-13 79.3 232 33.2
Haze_17513 Corylus avellana HOM05D000187 ORTHO05D000926 8.7e-13 78.6 250 28.4
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 1.1e-12 78.2 102 42.2
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 1.1e-12 78.2 102 42.2
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 1.1e-12 78.2 102 42.2
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 1.1e-12 78.2 102 42.2
BcaB07g32170 Brassica carinata HOM05D005772 ORTHO05D006468 1.9e-12 77.4 239 28.5
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 1.9e-12 77.4 117 38.5
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 3.3e-12 76.6 117 37.6
Zm00001eb215960 Zea mays HOM05D046982 ORTHO05D006468 1.3e-11 74.7 106 35.8
Manes.14G007000 Manihot esculenta HOM05D005772 ORTHO05D006468 1.1e-10 71.6 117 34.2
Nitab4.5_0003012g0080 Nicotiana tabacum HOM05D005772 ORTHO05D006468 1.1e-10 71.6 50 62.0
C05p20700 Brassica napus HOM05D005772 ORTHO05D006468 2.4e-10 70.5 247 33.2
SalBow8G0153 Salvia bowleyana HOM05D005772 ORTHO05D006468 2.4e-10 70.5 282 26.6
Sed0012770 Sechium edule HOM05D005772 ORTHO05D006468 2.4e-10 70.5 227 28.6
SGA_v2.0_scaffold2751G54198 Striga asiatica HOM05D005772 ORTHO05D006468 3.4e-09 66.6 162 30.9
TPR.G38724 Trifolium pratense HOM05D003324 ORTHO05D006468 2.2e-08 63.9 66 50.0
Sp5g33960 Schrenkiella parvula HOM05D005772 ORTHO05D006468 6.4e-08 62.4 117 35.0
SHI31127 Sapria himalayana HOM05D005772 ORTHO05D006468 8.4e-08 62.0 57 43.9
THA.LOC104813627 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 1.4e-07 61.2 151 31.1


User provided reference genes

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