Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G113400 Glycine max HOM05D006622 ORTHO05D007939 3.0e-159 565.1 279 100.0
Glyma.04G249500 Glycine max HOM05D006622 ORTHO05D007939 5.4e-140 501.1 282 90.8
Phvul.009G125300 Phaseolus vulgaris HOM05D006622 ORTHO05D007939 5.6e-137 491.1 280 87.9
VMungo1309G2133 Vigna mungo HOM05D006622 ORTHO05D007939 6.4e-133 477.6 280 85.7
TPR.G21062 Trifolium pratense HOM05D006622 ORTHO05D007939 9.6e-121 437.2 278 80.6
Lj1g0017707 Lotus japonicus HOM05D006622 ORTHO05D007939 3.6e-120 435.3 274 81.4
Ca_16559_v3 Cicer arietinum L. HOM05D006622 ORTHO05D007939 2.2e-117 426.0 278 78.4
Medtr3g088060 Medicago truncatula HOM05D006622 ORTHO05D007939 2.2e-117 426.0 280 77.1
arahy.Tifrunner.gnm1.ann1.29UIE3 Arachis hypogaea HOM05D006622 ORTHO05D007939 6.4e-117 424.5 282 76.2
arahy.Tifrunner.gnm1.ann1.9BP3HC Arachis hypogaea HOM05D006622 ORTHO05D007939 5.4e-116 421.4 283 75.6
Lalb_Chr11g0065931 Lupinus albus HOM05D006622 ORTHO05D007939 1.1e-113 413.7 276 77.5
CiPaw.06G031300 Carya illinoinensis HOM05D006622 ORTHO05D007939 5.1e-106 388.3 269 72.9
PGR044G1562 Punica granatum HOM05D006622 ORTHO05D007939 9.6e-105 384.0 267 71.5
QL09p034510 Quercus lobata HOM05D006622 ORTHO05D007939 9.6e-105 384.0 268 72.8
Cfa016021 Carpinus fangiana HOM05D006622 ORTHO05D007939 2.8e-104 382.5 271 72.7
MD15G1347700 Malus domestica HOM05D006622 ORTHO05D007939 3.6e-104 382.1 272 71.7
Eucgr.F04350 Eucalyptus grandis HOM05D006622 ORTHO05D007939 2.6e-102 375.9 277 69.7
AT1G21790 Arabidopsis thaliana HOM05D006622 ORTHO05D007939 5.8e-102 374.8 282 68.4
Thhalv10008385m.g Eutrema salsugineum HOM05D006622 ORTHO05D007939 7.6e-102 374.4 277 69.0
Ciclev10001495m.g Citrus clementina HOM05D006622 ORTHO05D007939 1.7e-101 373.2 275 70.2
Prupe.1G495500 Prunus persica HOM05D006622 ORTHO05D007939 3.8e-101 372.1 272 70.2
TAR628G0332 Trochodendron aralioides HOM05D006622 ORTHO05D007939 6.4e-101 371.3 278 69.8
Carub.0001s2125 Capsella rubella HOM05D006622 ORTHO05D007939 1.9e-100 369.8 277 68.2
Potri.002G083300 Populus trichocarpa HOM05D006622 ORTHO05D007939 1.9e-100 369.8 276 69.6
TWI60G0608 Tripterygium wilfordii HOM05D006622 ORTHO05D007939 1.9e-100 369.8 265 71.7
A06p17900 Brassica napus HOM05D006622 ORTHO05D007939 1.2e-99 367.1 268 68.7
BraA06t24880Z Brassica rapa HOM05D006622 ORTHO05D007939 1.2e-99 367.1 268 68.7
THA.LOC104800197 Tarenaya hassleriana HOM05D006622 ORTHO05D007939 2.1e-99 366.3 277 66.4
Potri.005G178200 Populus trichocarpa HOM05D006622 ORTHO05D007939 2.7e-99 365.9 276 68.5
Dinv27309 Davidia involucrata HOM05D006622 ORTHO05D007939 4.6e-99 365.2 274 68.2
AL1G34990 Arabidopsis lyrata HOM05D006622 ORTHO05D007939 6.0e-99 364.8 266 69.5
Sabra05G0134700 Salix brachista HOM05D006622 ORTHO05D007939 7.9e-99 364.4 272 68.4
Atru.chr13.1464 Acer truncatum HOM05D006622 ORTHO05D007939 1.0e-98 364.0 266 70.3
Atru.chr13.1486 Acer truncatum HOM05D006622 ORTHO05D007939 1.3e-98 363.6 261 71.6
C05p20800 Brassica napus HOM05D006622 ORTHO05D007939 1.8e-98 363.2 269 68.4
Manes.18G077500 Manihot esculenta HOM05D006622 ORTHO05D007939 1.8e-98 363.2 274 70.8
Aa31LG7G5770 Aethionema arabicum HOM05D006622 ORTHO05D007939 2.3e-98 362.8 279 66.7
CARHR022170 Cardamine hirsuta HOM05D006622 ORTHO05D007939 1.1e-97 360.5 274 67.9
BcaB07g32178 Brassica carinata HOM05D006622 ORTHO05D007939 1.5e-97 360.1 269 68.0
BolC5t30779H Brassica oleracea HOM05D006622 ORTHO05D007939 9.6e-97 357.5 269 67.7
RcHm_v2.0_Chr6g0295871 Rosa chinensis HOM05D006622 ORTHO05D007939 1.3e-96 357.1 264 70.5
vmacro00835 Vaccinium macrocarpon HOM05D006622 ORTHO05D007939 1.3e-96 357.1 272 67.6
BcaC05g26102 Brassica carinata HOM05D006622 ORTHO05D007939 3.7e-96 355.5 269 67.3
CsaV3_6G034460 Cucumis sativus L. HOM05D006622 ORTHO05D007939 3.7e-96 355.5 269 68.0
CSS0023480 Camellia sinensis var. sinensis HOM05D006622 ORTHO05D007939 6.2e-96 354.8 275 65.5
CSS0048522 Camellia sinensis var. sinensis HOM05D006622 ORTHO05D007939 6.2e-96 354.8 275 65.5
Oeu040412.1 Olea europaea HOM05D006622 ORTHO05D007939 8.1e-96 354.4 273 65.6
GSVIVG01008863001 Vitis vinifera HOM05D006622 ORTHO05D007939 8.1e-96 354.4 256 71.5
Thecc.08G125800 Theobroma cacao HOM05D006622 ORTHO05D007939 1.1e-95 354.0 263 69.2
MELO3C010612.2 Cucumis melo HOM05D006622 ORTHO05D007939 1.4e-95 353.6 275 65.5
Gorai.009G283400 Gossypium raimondii HOM05D006622 ORTHO05D007939 1.4e-95 353.6 269 67.7
Aqoxy5G02345 Aquilegia oxysepala HOM05D006622 ORTHO05D007939 4.0e-95 352.1 255 69.4
Gohir.D05G270800 Gossypium hirsutum HOM05D006622 ORTHO05D007939 5.3e-95 351.7 269 67.3
Duzib093G0047 Durio zibethinus HOM05D006622 ORTHO05D007939 9.0e-95 350.9 258 69.4
Gohir.A05G268900 Gossypium hirsutum HOM05D006622 ORTHO05D007939 1.5e-94 350.1 269 66.9
RhsimUnG0092500 Rhododendron simsii HOM05D006622 ORTHO05D007939 2.0e-94 349.7 275 64.7
FvH4_2g26990 Fragaria vesca HOM05D006622 ORTHO05D007939 4.5e-94 348.6 255 71.4
FAN24G2914 Fragaria x ananassa HOM05D006622 ORTHO05D007939 4.5e-94 348.6 255 71.4
Haze_00437 Corylus avellana HOM05D006622 ORTHO05D007939 5.8e-94 348.2 340 57.1
DCAR_003552 Daucus carota HOM05D006622 ORTHO05D007939 7.6e-94 347.8 262 68.7
Actinidia29467 Actinidia chinensis HOM05D006622 ORTHO05D007939 1.7e-93 346.7 269 67.3
MSTRG.24172 Avicennia marina HOM05D006622 ORTHO05D007939 1.7e-93 346.7 274 65.3
Hund26807 Selenicereus undatus HOM05D006622 ORTHO05D007939 1.1e-92 344.0 255 67.5
HanXRQChr09g0260611 Helianthus annuus HOM05D006622 ORTHO05D007939 3.2e-92 342.4 264 68.2
FAN15G0029 Fragaria x ananassa HOM05D006622 ORTHO05D007939 5.5e-92 341.7 255 70.6
EL10Ac1g01019 Beta vulgaris HOM05D006622 ORTHO05D007939 9.3e-92 340.9 276 60.9
COL.COLO4_20860 Corchorus olitorius HOM05D006622 ORTHO05D007939 2.1e-91 339.7 293 62.8
PSO017G0487 Papaver somniferum HOM05D006622 ORTHO05D007939 3.5e-91 339.0 269 66.2
PSO478G0228 Papaver somniferum HOM05D006622 ORTHO05D007939 1.3e-90 337.0 264 67.4
Lsat_1_v5_gn_4_135580 Lactuca sativa HOM05D006622 ORTHO05D007939 6.7e-90 334.7 264 66.3
PGSC0003DMG400044436 Solanum tuberosum HOM05D006622 ORTHO05D007939 6.7e-90 334.7 284 63.4
PGSC0003DMG402008996 Solanum tuberosum HOM05D006622 ORTHO05D007939 6.7e-90 334.7 284 63.4
SGA_v2.0_scaffold24G10458 Striga asiatica HOM05D006622 ORTHO05D007939 8.7e-90 334.3 279 63.4
Migut.N03281 Erythranthe guttata HOM05D006622 ORTHO05D007939 1.1e-89 334.0 264 65.2
CAN.G69.14 Capsicum annuum HOM05D006622 ORTHO05D007939 2.5e-89 332.8 266 63.2
CANSAT35G0359 Cannabis sativa HOM05D006622 ORTHO05D007939 1.6e-88 330.1 280 65.7
CANSAT35G1811 Cannabis sativa HOM05D006622 ORTHO05D007939 1.6e-88 330.1 278 65.8
Zm00001eb366620 Zea mays HOM05D006622 ORTHO05D007939 6.3e-88 328.2 269 65.1
Solyc01g079770.2 Solanum lycopersicum HOM05D006622 ORTHO05D007939 8.2e-88 327.8 284 62.0
ATR0584G160 Amborella trichopoda HOM05D006622 ORTHO05D007939 4.1e-87 325.5 278 62.2
ECA232G1829 Erigeron canadensis HOM05D006622 ORTHO05D007939 4.1e-87 325.5 264 65.9
Sopen01g031530 Solanum pennellii HOM05D006622 ORTHO05D007939 9.0e-87 324.3 284 61.6
Zm00001eb146520 Zea mays HOM05D006622 ORTHO05D007939 4.5e-86 322.0 269 64.3
Cc10_g11940 Coffea canephora HOM05D006622 ORTHO05D007939 8.5e-85 317.8 270 61.5
HPP92_013761 Vanilla planifolia HOM05D006622 ORTHO05D007939 7.2e-84 314.7 266 59.4
Nitab4.5_0000630g0130 Nicotiana tabacum HOM05D006622 ORTHO05D007939 2.1e-83 313.2 275 60.0
Os01g0869600 Oryza sativa ssp. japonica HOM05D006622 ORTHO05D007939 7.9e-83 311.2 259 64.5
Sc15g0002770 Simmondsia chinensis HOM05D006622 ORTHO05D007939 5.3e-79 298.5 259 58.7
AUR62014332 Chenopodium quinoa HOM05D006622 ORTHO05D007939 1.2e-75 287.3 274 55.5
Sed0026599 Sechium edule HOM05D006622 ORTHO05D007939 4.8e-72 275.4 169 77.5
AUR62019075 Chenopodium quinoa HOM05D006622 ORTHO05D007939 2.4e-71 273.1 198 66.7
Psat5g087320 Pisum sativum HOM05D006622 ORTHO05D007939 1.4e-68 263.8 178 77.5
MD08G1162300 Malus domestica HOM05D006622 ORTHO05D007939 1.9e-68 263.5 178 71.9
FAN20G1317 Fragaria x ananassa HOM05D006622 ORTHO05D007939 6.7e-66 255.0 169 75.7
Mapoly0055s0084 Marchantia polymorpha HOM05D006622 ORTHO05D007939 4.1e-63 245.7 270 51.9
Sp1g19350 Schrenkiella parvula HOM05D006622 ORTHO05D007939 6.7e-58 228.4 137 78.1
ClCG08G005670 Citrullus lanatus HOM05D006622 ORTHO05D007939 3.3e-57 226.1 171 67.3
SMO351G0129 Selaginella moellendorffii HOM05D006622 ORTHO05D007939 1.7e-56 223.8 267 46.4
Cpa.g.sc64.93 Carica papaya HOM05D006622 ORTHO05D007939 2.4e-55 219.9 163 69.9
Oeu040413.1 Olea europaea HOM05D006622 ORTHO05D007939 7.0e-55 218.4 175 63.4
CDE08G0135 Ceratophyllum demersum HOM05D006622 ORTHO05D007939 4.2e-52 209.1 255 51.4
Peaxi162Scf01270g00111 Petunia axillaris HOM05D006622 ORTHO05D007939 1.2e-49 201.1 272 43.8
CDE06G0548 Ceratophyllum demersum HOM05D006622 ORTHO05D007939 2.8e-48 196.4 152 66.4
Pp3c12_11900 Physcomitrium patens HOM05D006622 ORTHO05D007939 4.5e-46 189.1 269 42.8
AagrBONN_evm.TU.Sc2ySwM_117.1000 Anthoceros agrestis HOM05D006622 ORTHO05D007939 3.0e-42 176.4 217 47.5
Nn5g28301 Nelumbo nucifera HOM05D006622 ORTHO05D007939 1.2e-38 164.5 277 39.4
Nitab4.5_0000968g0040 Nicotiana tabacum HOM05D006622 ORTHO05D007939 1.4e-34 151.0 278 36.7
PGSC0003DMG400007898 Solanum tuberosum HOM05D006622 ORTHO05D007939 3.9e-29 132.9 140 52.9
CBR_g40088 Chara braunii HOM05D006622 ORTHO05D007939 1.4e-26 124.4 154 44.2
Aa31LG4G7650 Aethionema arabicum HOM05D006622 ORTHO05D007939 3.1e-26 123.2 78 74.4
Lj7C341T13 Lonicera japonica HOM05D006622 ORTHO05D007939 4.4e-25 119.4 90 62.2
AagrBONN_evm.TU.Sc2ySwM_117.972 Anthoceros agrestis HOM05D006622 ORTHO05D007939 1.7e-21 107.5 172 43.0
Aa31LG4G7660 Aethionema arabicum HOM05D006622 ORTHO05D007939 4.0e-18 96.3 65 69.2
Prupe.1G512700 Prunus persica HOM05D006622 ORTHO05D007939 8.9e-18 95.1 75 65.3
Actinidia03468 Actinidia chinensis HOM05D006622 ORTHO05D007939 5.8e-17 92.4 266 31.6
Lj7C341T14 Lonicera japonica HOM05D006622 ORTHO05D007939 6.0e-14 82.4 81 56.8
AagrBONN_evm.TU.Sc2ySwM_117.993 Anthoceros agrestis HOM05D006622 ORTHO05D007939 3.3e-12 76.6 140 39.3
HPP92_013753 Vanilla planifolia HOM05D006622 ORTHO05D007939 5.8e-09 65.9 72 50.0
unitig_748.g7104 Utricularia gibba HOM05D006622 ORTHO05D007939 2.4e-07 60.5 78 41.0


User provided reference genes

Program Settings