Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 1.2e-178 629.8 323 100.0
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 3.0e-158 562.0 325 89.5
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 6.9e-155 550.8 325 88.9
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 1.0e-142 510.4 319 81.2
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 3.3e-141 505.4 319 81.2
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 8.2e-140 500.7 318 79.9
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 6.9e-139 497.7 319 80.3
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 1.0e-137 493.8 319 78.7
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 2.2e-137 492.7 320 79.1
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 1.6e-132 476.5 373 68.6
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 2.1e-132 476.1 318 78.3
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 3.8e-129 465.3 324 74.7
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 1.9e-125 453.0 319 72.7
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 1.3e-121 440.3 319 71.5
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 1.3e-121 440.3 319 72.4
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 8.5e-121 437.6 319 70.2
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 4.2e-120 435.3 319 70.5
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 1.2e-119 433.7 316 70.3
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 6.1e-119 431.4 321 68.5
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 1.5e-117 426.8 319 69.6
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 2.0e-117 426.4 319 69.9
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 3.3e-117 425.6 319 68.7
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 3.7e-116 422.2 318 69.2
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 6.3e-116 421.4 319 69.6
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 8.2e-116 421.0 314 68.5
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 1.1e-115 420.6 318 68.2
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 1.1e-115 420.6 319 68.3
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 1.8e-115 419.9 319 68.0
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 4.1e-115 418.7 367 61.9
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 5.3e-115 418.3 312 69.9
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 5.9e-114 414.8 319 67.7
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.0e-113 414.1 319 68.0
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 3.8e-113 412.1 319 67.4
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 5.0e-113 411.8 319 68.7
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 5.0e-113 411.8 322 66.5
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 6.5e-113 411.4 311 70.1
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 1.4e-112 410.2 319 68.0
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.4e-112 410.2 319 68.0
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 1.4e-112 410.2 319 66.8
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 3.2e-112 409.1 319 66.8
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 2.7e-111 406.0 319 68.3
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 7.9e-111 404.4 319 67.4
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 2.3e-110 402.9 319 66.5
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 3.0e-110 402.5 319 66.1
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 3.0e-110 402.5 364 62.6
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 3.9e-110 402.1 311 66.9
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 3.9e-110 402.1 333 64.6
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 1.1e-109 400.6 306 68.6
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 5.7e-109 398.3 318 66.0
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 2.2e-108 396.4 320 65.3
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 3.7e-108 395.6 316 64.2
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 6.3e-108 394.8 324 66.7
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 1.1e-107 394.0 315 65.4
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 1.8e-107 393.3 378 57.4
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 3.1e-107 392.5 315 65.7
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 4.1e-107 392.1 329 62.9
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 5.3e-107 391.7 324 66.4
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 9.1e-107 391.0 316 63.3
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 4.5e-106 388.7 316 63.3
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.0e-105 387.5 333 63.7
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 8.5e-105 384.4 331 62.2
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 1.1e-104 384.0 315 62.9
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 1.9e-104 383.3 315 63.8
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 3.2e-104 382.5 319 63.9
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 4.2e-104 382.1 314 65.9
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 2.1e-103 379.8 319 63.9
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.0e-102 375.6 319 63.9
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 4.0e-102 375.6 320 64.1
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 2.8e-100 369.4 320 60.9
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 3.7e-100 369.0 340 60.9
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 2.4e-99 366.3 337 58.8
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 2.0e-98 363.2 319 61.4
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 4.5e-98 362.1 318 61.9
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 4.5e-98 362.1 317 62.8
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 1.0e-97 360.9 319 63.0
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 1.3e-97 360.5 317 60.3
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 2.5e-96 356.3 300 63.0
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 3.6e-95 352.4 319 60.5
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 3.6e-95 352.4 317 59.3
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 3.6e-95 352.4 302 61.9
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 6.1e-95 351.7 325 59.4
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 1.0e-94 350.9 325 59.7
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 1.0e-94 350.9 324 60.2
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 2.3e-94 349.7 319 59.6
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 1.2e-93 347.4 323 58.5
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 1.5e-93 347.1 325 58.5
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 1.5e-93 347.1 323 58.8
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 3.4e-93 345.9 323 58.5
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 3.4e-93 345.9 323 58.5
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 3.4e-93 345.9 323 58.5
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 7.5e-93 344.7 319 60.5
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 9.8e-93 344.4 325 58.5
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 1.3e-92 344.0 325 59.1
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 1.3e-92 344.0 325 59.1
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 4.8e-92 342.0 326 58.3
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 1.2e-90 337.4 257 69.3
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 1.2e-90 337.4 313 55.0
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 1.6e-90 337.0 329 57.1
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 4.5e-90 335.5 319 58.3
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 1.3e-89 334.0 319 57.7
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 3.8e-89 332.4 307 59.3
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 2.5e-88 329.7 318 58.2
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 2.0e-85 320.1 267 64.4
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 8.3e-84 314.7 317 57.7
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 8.3e-84 314.7 314 55.4
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.5e-82 308.9 359 52.6
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 1.7e-81 307.0 315 53.7
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 1.5e-80 303.9 303 56.8
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 8.0e-79 298.1 265 61.1
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 1.1e-75 287.7 207 72.0
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 8.0e-71 271.6 319 49.8
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 1.1e-70 271.2 325 50.8
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 1.5e-69 267.3 313 51.4
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 1.6e-66 257.3 274 52.2
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 3.9e-65 252.7 311 47.3
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 3.7e-60 236.1 312 46.2
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 6.2e-55 218.8 319 42.0
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 1.4e-51 207.6 114 93.9
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 5.2e-46 189.1 177 58.8
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.9e-44 183.3 267 45.3
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 3.8e-44 183.0 321 37.4
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 9.3e-43 178.3 110 84.5
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 7.3e-40 168.7 175 48.0
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 3.6e-39 166.4 191 51.8
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 2.4e-38 163.7 110 76.4
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 1.9e-35 154.1 105 73.3
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 5.4e-35 152.5 135 63.0
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 6.7e-33 145.6 100 72.0
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 2.7e-26 123.6 254 36.2
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 4.3e-24 116.3 358 30.2
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 9.0e-22 108.6 99 59.6
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 1.3e-15 88.2 100 57.0
CiPaw.05G223900 Carya illinoinensis HOM05D005174 ORTHO05D006784 4.8e-15 86.3 94 48.9
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 2.0e-13 80.9 54 72.2
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 3.4e-13 80.1 46 87.0
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 3.4e-13 80.1 46 87.0
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 3.4e-13 80.1 46 87.0
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 1.7e-12 77.8 49 81.6
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 2.9e-12 77.0 67 59.7
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 5.0e-12 76.3 45 84.4
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 5.5e-11 72.8 53 66.0
FAN24G2292 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.3e-09 67.4 129 36.4
MBI04_g30787_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 1.1e-08 65.1 68 47.1
Oeu059427.1 Olea europaea HOM05D005174 ORTHO05D006784 5.7e-08 62.8 47 57.4
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 8.2e-07 58.9 51 64.7
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 8.2e-07 58.9 36 75.0


User provided reference genes

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