Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G110450 Glycine max HOM05D003427 ORTHO05D003927 2.7e-61 238.4 114 100.0
CSS0043512 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 1.2e-37 159.8 96 80.2
CSS0048113 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 1.2e-37 159.8 96 80.2
QL04p060321 Quercus lobata HOM05D003427 ORTHO05D003927 2.1e-37 159.1 96 78.1
VMungo1309G2531 Vigna mungo HOM05D003427 ORTHO05D003927 2.1e-37 159.1 96 79.2
Ca_15210_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 4.6e-37 157.9 96 78.1
FvH4_2g13600 Fragaria vesca HOM05D003427 ORTHO05D003927 7.8e-37 157.1 94 80.9
FAN15G0544 Fragaria x ananassa HOM05D003427 ORTHO05D003927 1.3e-36 156.4 94 80.9
Phvul.009G122400 Phaseolus vulgaris HOM05D003427 ORTHO05D003927 1.3e-36 156.4 96 78.1
Psat5g133440 Pisum sativum HOM05D003427 ORTHO05D003927 1.3e-36 156.4 94 78.7
CANSAT56G1577 Cannabis sativa HOM05D003427 ORTHO05D003927 2.3e-36 155.6 94 78.7
Cpa.g.sc36.19 Carica papaya HOM05D003427 ORTHO05D003927 2.3e-36 155.6 94 79.8
Prupe.1G502900 Prunus persica HOM05D003427 ORTHO05D003927 3.0e-36 155.2 94 78.7
QL07p045468 Quercus lobata HOM05D003427 ORTHO05D003927 3.0e-36 155.2 95 76.8
CSS0044236 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 3.9e-36 154.8 96 78.1
CANSAT56G1611 Cannabis sativa HOM05D003427 ORTHO05D003927 3.9e-36 154.8 94 77.7
FAN15G0165 Fragaria x ananassa HOM05D003427 ORTHO05D003927 3.9e-36 154.8 94 79.8
Atru.chr13.1349 Acer truncatum HOM05D003427 ORTHO05D003927 5.1e-36 154.5 94 77.7
Atru.chr13.1391 Acer truncatum HOM05D003427 ORTHO05D003927 5.1e-36 154.5 94 77.7
FvH4_2g26430 Fragaria vesca HOM05D003427 ORTHO05D003927 5.1e-36 154.5 94 78.7
FAN24G2254 Fragaria x ananassa HOM05D003427 ORTHO05D003927 5.1e-36 154.5 94 78.7
RcHm_v2.0_Chr6g0295111 Rosa chinensis HOM05D003427 ORTHO05D003927 5.1e-36 154.5 94 80.9
TPR.G39483 Trifolium pratense HOM05D003427 ORTHO05D003927 5.1e-36 154.5 94 76.6
MD15G1354500 Malus domestica HOM05D003427 ORTHO05D003927 6.6e-36 154.1 94 77.7
Medtr3g072830 Medicago truncatula HOM05D003427 ORTHO05D003927 6.6e-36 154.1 94 75.5
TWI12G1192 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 6.6e-36 154.1 94 78.7
Hund16834 Selenicereus undatus HOM05D003427 ORTHO05D003927 1.1e-35 153.3 101 72.3
Phvul.003G010800 Phaseolus vulgaris HOM05D003427 ORTHO05D003927 1.5e-35 152.9 94 76.6
Actinidia23060 Actinidia chinensis HOM05D003427 ORTHO05D003927 1.9e-35 152.5 94 76.6
FAN24G2318 Fragaria x ananassa HOM05D003427 ORTHO05D003927 1.9e-35 152.5 95 80.0
Potri.002G086800 Populus trichocarpa HOM05D003427 ORTHO05D003927 1.9e-35 152.5 94 79.8
Sc01g0001400 Simmondsia chinensis HOM05D003427 ORTHO05D003927 2.5e-35 152.1 101 71.3
THA.LOC104800187 Tarenaya hassleriana HOM05D003427 ORTHO05D003927 2.5e-35 152.1 94 78.7
Lj1g0010808 Lotus japonicus HOM05D003427 ORTHO05D003927 3.3e-35 151.8 94 77.7
Migut.C01159 Erythranthe guttata HOM05D003427 ORTHO05D003927 4.3e-35 151.4 94 76.6
TWI56G0570 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 4.3e-35 151.4 94 78.7
VMungo1215G1715 Vigna mungo HOM05D003427 ORTHO05D003927 4.3e-35 151.4 94 73.4
arahy.Tifrunner.gnm1.ann1.X2WTDQ Arachis hypogaea HOM05D003427 ORTHO05D003927 5.6e-35 151.0 94 73.4
BcaB06g29200 Brassica carinata HOM05D003427 ORTHO05D003927 5.6e-35 151.0 94 77.7
A04p31750 Brassica napus HOM05D003427 ORTHO05D003927 5.6e-35 151.0 94 77.7
C04p69170 Brassica napus HOM05D003427 ORTHO05D003927 5.6e-35 151.0 94 77.7
BolC4t28415H Brassica oleracea HOM05D003427 ORTHO05D003927 5.6e-35 151.0 94 77.7
Glyma.04G252000 Glycine max HOM05D003427 ORTHO05D003927 5.6e-35 151.0 90 78.9
Hund16838 Selenicereus undatus HOM05D003427 ORTHO05D003927 5.6e-35 151.0 101 71.3
TAR381G1219 Trochodendron aralioides HOM05D003427 ORTHO05D003927 5.6e-35 151.0 94 77.7
BraA04t18633Z Brassica rapa HOM05D003427 ORTHO05D003927 7.3e-35 150.6 94 77.7
Glyma.06G110500 Glycine max HOM05D003427 ORTHO05D003927 7.3e-35 150.6 90 78.9
Rhsim06G0106600 Rhododendron simsii HOM05D003427 ORTHO05D003927 7.3e-35 150.6 90 78.9
TPR.G19881 Trifolium pratense HOM05D003427 ORTHO05D003927 7.3e-35 150.6 94 76.6
Potri.005G174600 Populus trichocarpa HOM05D003427 ORTHO05D003927 9.5e-35 150.2 94 78.7
RcHm_v2.0_Chr6g0275211 Rosa chinensis HOM05D003427 ORTHO05D003927 9.5e-35 150.2 94 78.7
Sp4g23950 Schrenkiella parvula HOM05D003427 ORTHO05D003927 9.5e-35 150.2 94 77.7
Haze_00493 Corylus avellana HOM05D003427 ORTHO05D003927 1.2e-34 149.8 125 61.6
Eucgr.F04372 Eucalyptus grandis HOM05D003427 ORTHO05D003927 1.2e-34 149.8 94 77.7
vmacro20081 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 1.2e-34 149.8 90 78.9
arahy.Tifrunner.gnm1.ann1.81342Q Arachis hypogaea HOM05D003427 ORTHO05D003927 1.6e-34 149.4 94 72.3
A05p02420 Brassica napus HOM05D003427 ORTHO05D003927 1.6e-34 149.4 94 75.5
BraA05t19236Z Brassica rapa HOM05D003427 ORTHO05D003927 1.6e-34 149.4 94 75.5
Hund27042 Selenicereus undatus HOM05D003427 ORTHO05D003927 1.6e-34 149.4 93 74.2
Aqoxy1G02472 Aquilegia oxysepala HOM05D003427 ORTHO05D003927 2.1e-34 149.1 90 80.0
BcaB06g29198 Brassica carinata HOM05D003427 ORTHO05D003927 2.1e-34 149.1 94 75.5
BcaC02g12787 Brassica carinata HOM05D003427 ORTHO05D003927 2.1e-34 149.1 94 74.5
BcaNung06817 Brassica carinata HOM05D003427 ORTHO05D003927 2.1e-34 149.1 94 74.5
C04p02870 Brassica napus HOM05D003427 ORTHO05D003927 2.1e-34 149.1 94 74.5
BolC4t21927H Brassica oleracea HOM05D003427 ORTHO05D003927 2.1e-34 149.1 94 74.5
CARHR136800 Cardamine hirsuta HOM05D003427 ORTHO05D003927 2.1e-34 149.1 94 76.6
Ciclev10001037m.g Citrus clementina HOM05D003427 ORTHO05D003927 2.8e-34 148.7 94 75.5
TWI74G0994 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 2.8e-34 148.7 107 69.2
CiPaw.05G226400 Carya illinoinensis HOM05D003427 ORTHO05D003927 3.6e-34 148.3 94 75.5
Medtr3g072840 Medicago truncatula HOM05D003427 ORTHO05D003927 3.6e-34 148.3 94 75.5
MSTRG.25396 Avicennia marina HOM05D003427 ORTHO05D003927 4.7e-34 147.9 94 73.4
GSVIVG01008915001 Vitis vinifera HOM05D003427 ORTHO05D003927 4.7e-34 147.9 94 75.5
Lalb_Chr11g0065761 Lupinus albus HOM05D003427 ORTHO05D003927 8.1e-34 147.1 95 76.8
Hma1.2p1_0009F.1_g006270 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 1.1e-33 146.7 90 78.9
Lalb_Chr23g0270941 Lupinus albus HOM05D003427 ORTHO05D003927 1.1e-33 146.7 110 67.3
MSTRG.1469 Avicennia marina HOM05D003427 ORTHO05D003927 1.4e-33 146.4 94 72.3
AL4G40010 Arabidopsis lyrata HOM05D003427 ORTHO05D003927 2.3e-33 145.6 94 75.5
AT2G41705 Arabidopsis thaliana HOM05D003427 ORTHO05D003927 2.3e-33 145.6 94 75.5
Carub.0004s2398 Capsella rubella HOM05D003427 ORTHO05D003927 2.3e-33 145.6 94 74.5
Lj3g0027376 Lotus japonicus HOM05D003427 ORTHO05D003927 2.3e-33 145.6 93 76.3
EL10Ac7g18243 Beta vulgaris HOM05D003427 ORTHO05D003927 3.1e-33 145.2 90 75.6
Psat5g229600 Pisum sativum HOM05D003427 ORTHO05D003927 4.0e-33 144.8 89 77.5
Thhalv10016628m.g Eutrema salsugineum HOM05D003427 ORTHO05D003927 5.2e-33 144.4 90 78.9
Medtr3g007470 Medicago truncatula HOM05D003427 ORTHO05D003927 5.2e-33 144.4 90 77.8
Sopen11g008180 Solanum pennellii HOM05D003427 ORTHO05D003927 5.2e-33 144.4 96 71.9
PGSC0003DMG400012073 Solanum tuberosum HOM05D003427 ORTHO05D003927 5.2e-33 144.4 96 71.9
EL10Ac1g00015 Beta vulgaris HOM05D003427 ORTHO05D003927 6.8e-33 144.1 90 76.7
Sed0011022 Sechium edule HOM05D003427 ORTHO05D003927 8.9e-33 143.7 94 74.5
CAN.G134.189 Capsicum annuum HOM05D003427 ORTHO05D003927 1.2e-32 143.3 94 72.3
Dinv27352 Davidia involucrata HOM05D003427 ORTHO05D003927 1.2e-32 143.3 94 73.4
Solyc11g013120.2 Solanum lycopersicum HOM05D003427 ORTHO05D003927 1.2e-32 143.3 96 70.8
ClCG03G009520 Citrullus lanatus HOM05D003427 ORTHO05D003927 3.4e-32 141.7 94 71.3
MELO3C003029.2 Cucumis melo HOM05D003427 ORTHO05D003927 3.4e-32 141.7 94 73.4
CsaV3_5G023150 Cucumis sativus L. HOM05D003427 ORTHO05D003927 3.4e-32 141.7 94 73.4
Thecc.08G120400 Theobroma cacao HOM05D003427 ORTHO05D003927 3.4e-32 141.7 94 72.3
Duzib093G1044 Durio zibethinus HOM05D003427 ORTHO05D003927 5.8e-32 141.0 94 72.3
Ca_14080_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 9.9e-32 140.2 89 77.5
Cc06_g13570 Coffea canephora HOM05D003427 ORTHO05D003927 1.3e-31 139.8 94 69.1
Duzib116G0521 Durio zibethinus HOM05D003427 ORTHO05D003927 1.3e-31 139.8 94 70.2
PSO384G4155 Papaver somniferum HOM05D003427 ORTHO05D003927 1.7e-31 139.4 90 73.3
SGA_v2.0_scaffold52G18992 Striga asiatica HOM05D003427 ORTHO05D003927 2.2e-31 139.0 94 69.1
vmacro05626 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 2.2e-31 139.0 101 68.3
Ah.05g172200 Amaranthus hybridus HOM05D003427 ORTHO05D003927 2.9e-31 138.7 90 76.7
MD15G1354300 Malus domestica HOM05D003427 ORTHO05D003927 2.9e-31 138.7 92 73.9
SGA_v2.0_scaffold24G10480 Striga asiatica HOM05D003427 ORTHO05D003927 2.9e-31 138.7 94 69.1
Oeu050892.2 Olea europaea HOM05D003427 ORTHO05D003927 4.9e-31 137.9 94 69.1
SalBow7G0329 Salvia bowleyana HOM05D003427 ORTHO05D003927 4.9e-31 137.9 94 69.1
SalBow7G2208 Salvia bowleyana HOM05D003427 ORTHO05D003927 4.9e-31 137.9 94 69.1
Aa31LG1G23720 Aethionema arabicum HOM05D003427 ORTHO05D003927 8.4e-31 137.1 90 74.4
Gohir.A06G042200 Gossypium hirsutum HOM05D003427 ORTHO05D003927 8.4e-31 137.1 94 69.1
Gorai.010G048400 Gossypium raimondii HOM05D003427 ORTHO05D003927 8.4e-31 137.1 94 69.1
Manes.18G074712 Manihot esculenta HOM05D003427 ORTHO05D003927 1.4e-30 136.3 83 79.5
HPP92_012116 Vanilla planifolia HOM05D003427 ORTHO05D003927 1.4e-30 136.3 89 71.9
ECA233G4311 Erigeron canadensis HOM05D001171 ORTHO05D006126 1.9e-30 136.0 90 71.1
ECA246G0604 Erigeron canadensis HOM05D003427 ORTHO05D003927 1.9e-30 136.0 90 71.1
HanXRQChr17g0537311 Helianthus annuus HOM05D003427 ORTHO05D003927 2.4e-30 135.6 90 71.1
Lsat_1_v5_gn_3_20261 Lactuca sativa HOM05D003427 ORTHO05D003927 4.1e-30 134.8 90 70.0
Gohir.D06G043200 Gossypium hirsutum HOM05D003427 ORTHO05D003927 5.4e-30 134.4 94 67.0
COL.COLO4_38335 Corchorus olitorius HOM05D003427 ORTHO05D003927 7.1e-30 134.0 90 71.1
Os10g0567000 Oryza sativa ssp. japonica HOM05D003427 ORTHO05D003927 9.2e-30 133.7 90 67.8
CDE01G0736 Ceratophyllum demersum HOM05D003427 ORTHO05D003927 1.2e-29 133.3 90 72.2
Nitab4.5_0005357g0010 Nicotiana tabacum HOM05D003427 ORTHO05D003927 6.0e-29 131.0 96 66.7
vmacro12550 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 1.0e-28 130.2 88 69.3
Zm00001eb390680 Zea mays HOM05D003427 ORTHO05D003927 2.3e-28 129.0 90 66.7
AUR62036406 Chenopodium quinoa HOM05D003427 ORTHO05D003927 3.9e-28 128.3 109 59.6
MD05G1028200 Malus domestica HOM05D003427 ORTHO05D003927 1.9e-27 125.9 99 65.7
Cfa015981 Carpinus fangiana HOM05D003427 ORTHO05D003927 1.2e-26 123.2 108 60.2
AagrBONN_evm.TU.Sc2ySwM_117.415 Anthoceros agrestis HOM05D003427 ORTHO05D003927 3.6e-26 121.7 109 56.9
Nitab4.5_0006276g0030 Nicotiana tabacum HOM05D003427 ORTHO05D003927 3.6e-26 121.7 103 58.3
SEGI_33607 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 1.8e-25 119.4 93 62.4
SEGI_06352 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 2.4e-25 119.0 94 60.6
SEGI_02547 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 5.2e-25 117.9 93 61.3
SEGI_27083 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 5.2e-25 117.9 93 61.3
Sabra05G0131500 Salix brachista HOM05D003427 ORTHO05D003927 2.0e-24 115.9 135 50.4
Peaxi162Scf00402g00076 Petunia axillaris HOM05D003427 ORTHO05D003927 7.6e-24 114.0 110 53.6
Aqoxy1G02473 Aquilegia oxysepala HOM05D003427 ORTHO05D003927 1.4e-22 109.8 84 67.9
Mapoly0005s0025 Marchantia polymorpha HOM05D003427 ORTHO05D003927 1.9e-22 109.4 98 53.1
unitig_748.g7679 Utricularia gibba HOM05D003427 ORTHO05D003927 2.4e-22 109.0 109 51.4
AagrBONN_evm.TU.Sc2ySwM_344.5028 Anthoceros agrestis HOM05D003427 ORTHO05D003927 1.2e-21 106.7 83 61.4
FAN27G1027 Fragaria x ananassa HOM05D003427 ORTHO05D003927 4.6e-21 104.8 67 76.1
Pp3c6_15270 Physcomitrium patens HOM05D003427 ORTHO05D003927 3.0e-20 102.1 110 49.1
ATR0807G044 Amborella trichopoda HOM05D003427 ORTHO05D003927 5.1e-20 101.3 83 60.2
Pp3c27_680 Physcomitrium patens HOM05D003427 ORTHO05D003927 2.5e-19 99.0 105 45.7
Rhsim10G0043500 Rhododendron simsii HOM05D003427 ORTHO05D003927 2.8e-18 95.5 49 85.7
Lj4A597T12 Lonicera japonica HOM05D003427 ORTHO05D003927 1.4e-17 93.2 49 85.7
Sabra05G0131700 Salix brachista HOM05D003427 ORTHO05D003927 2.4e-17 92.4 60 75.0
Glyma.04G252050 Glycine max HOM05D003427 ORTHO05D003927 4.0e-17 91.7 45 95.6
Hma1.2p1_0009F.1_g006283 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 1.2e-16 90.1 51 76.5
AUR62036452 Chenopodium quinoa HOM05D003427 ORTHO05D003927 1.5e-16 89.7 52 75.0
AUR62023631 Chenopodium quinoa HOM05D003427 ORTHO05D003927 2.0e-16 89.4 49 79.6
Lalb_Chr23g0270911 Lupinus albus HOM05D003427 ORTHO05D003927 2.0e-16 89.4 51 82.4
MD05G1028400 Malus domestica HOM05D003427 ORTHO05D003927 2.6e-16 89.0 51 78.4
Nn5g28144 Nelumbo nucifera HOM05D003427 ORTHO05D003927 2.6e-16 89.0 49 83.7
MSTRG.1470 Avicennia marina HOM05D003427 ORTHO05D003927 3.4e-16 88.6 49 79.6
RhsimUnG0120600 Rhododendron simsii HOM05D003427 ORTHO05D003927 3.4e-16 88.6 49 81.6
AUR62004716 Chenopodium quinoa HOM05D003427 ORTHO05D003927 9.9e-16 87.0 90 47.8
MD08G1121700 Malus domestica HOM05D003427 ORTHO05D003927 2.9e-15 85.5 50 76.0
Ca_14032_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 1.1e-14 83.6 44 86.4
Hma1.2p1_0009F.1_g006290 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 1.1e-14 83.6 44 81.8
MD16G1151600 Malus domestica HOM05D003427 ORTHO05D003927 3.2e-14 82.0 44 81.8
MD08G1170500 Malus domestica HOM05D003427 ORTHO05D003927 9.3e-14 80.5 94 48.9
TAR381G0480 Trochodendron aralioides HOM05D003427 ORTHO05D003927 9.3e-14 80.5 44 84.1
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 1.2e-13 80.1 73 56.2
SEGI_10482 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 2.5e-11 72.4 53 62.3
Hma1.2p1_0523F.1_g172050 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 2.1e-10 69.3 43 72.1
CBR_g54098 Chara braunii HOM05D003427 ORTHO05D003927 1.2e-08 63.5 70 40.0
TAR381G1345 Trochodendron aralioides HOM05D003427 ORTHO05D003927 1.5e-08 63.2 45 66.7
TPR.G25497 Trifolium pratense HOM05D003427 ORTHO05D003927 9.9e-08 60.5 41 70.7
Migut.C01160 Erythranthe guttata HOM05D003427 ORTHO05D003927 8.4e-07 57.4 39 66.7
CiPaw.05G226300 Carya illinoinensis HOM05D003427 ORTHO05D003927 1.4e-06 56.6 48 58.3
SEGI_19823 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 1.9e-06 56.2 44 63.6
SEGI_25864 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 1.9e-06 56.2 44 63.6


User provided reference genes

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