Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 7.1e-184 647.1 327 100.0
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 4.1e-163 578.2 328 91.2
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 6.7e-158 560.8 327 87.5
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 9.7e-157 557.0 327 86.9
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.4e-152 543.1 324 84.6
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 2.0e-149 532.7 327 83.2
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 4.4e-149 531.6 317 83.0
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 5.7e-149 531.2 315 84.4
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 6.3e-148 527.7 316 82.9
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 4.5e-146 521.5 325 82.5
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 1.3e-145 520.0 315 82.9
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 5.5e-144 514.6 315 81.6
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 1.6e-138 496.5 315 81.0
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 2.7e-130 469.2 371 68.2
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 2.8e-127 459.1 285 80.7
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 8.9e-126 454.1 294 78.2
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 3.4e-125 452.2 281 80.1
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 3.4e-125 452.2 322 68.6
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 4.4e-125 451.8 321 68.5
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 5.7e-125 451.4 328 69.2
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.7e-124 449.9 323 69.3
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 4.1e-123 445.3 319 68.7
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 4.5e-122 441.8 324 67.9
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.0e-121 440.7 324 68.8
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.7e-121 439.9 323 66.9
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 8.6e-121 437.6 318 68.2
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.9e-120 436.4 325 66.8
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 1.2e-119 433.7 313 67.7
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.6e-119 433.3 309 68.9
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 2.8e-119 432.6 310 68.4
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 4.7e-119 431.8 328 66.2
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 8.0e-119 431.0 328 66.2
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 1.0e-118 430.6 308 67.5
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 1.4e-118 430.3 319 66.8
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.3e-118 429.5 324 65.4
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 5.2e-118 428.3 310 68.1
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.5e-117 426.8 324 66.0
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.0e-117 426.4 310 67.1
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 3.4e-117 425.6 309 69.6
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 3.4e-117 425.6 322 65.8
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 5.8e-117 424.9 324 66.4
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 7.5e-117 424.5 306 69.9
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 1.3e-116 423.7 313 67.4
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 1.7e-116 423.3 308 68.2
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 1.7e-116 423.3 323 66.6
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 3.7e-116 422.2 306 69.6
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 1.1e-115 420.6 340 62.4
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.1e-115 420.6 309 66.7
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 1.9e-115 419.9 312 66.3
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 5.4e-115 418.3 309 66.3
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 9.2e-115 417.5 323 65.3
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 9.2e-115 417.5 310 65.8
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 1.6e-114 416.8 320 66.2
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 2.0e-114 416.4 321 64.2
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 4.6e-114 415.2 318 65.7
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 4.6e-114 415.2 323 65.3
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 1.3e-113 413.7 321 64.8
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 8.6e-113 411.0 316 64.6
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 1.9e-112 409.8 320 63.1
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 2.5e-112 409.5 310 65.8
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 5.6e-112 408.3 326 65.0
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 9.5e-112 407.5 323 61.9
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 1.2e-111 407.1 349 61.0
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 1.2e-111 407.1 324 63.0
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.1e-111 406.4 313 61.7
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 2.8e-111 406.0 312 62.5
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 4.7e-111 405.2 313 63.6
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 6.2e-111 404.8 347 59.9
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.1e-110 404.1 346 62.1
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 1.4e-110 403.7 327 61.8
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.3e-110 402.9 334 62.6
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 4.0e-110 402.1 327 61.5
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 1.2e-109 400.6 312 62.2
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 2.6e-109 399.4 307 66.8
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 2.6e-109 399.4 327 62.4
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 5.8e-109 398.3 272 70.6
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 2.2e-108 396.4 349 60.2
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 6.4e-108 394.8 315 61.6
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 1.1e-107 394.0 310 62.3
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 2.4e-107 392.9 311 60.8
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.1e-106 389.8 392 53.8
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 2.7e-106 389.4 307 62.9
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.6e-106 388.7 320 63.8
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 6.0e-106 388.3 307 63.2
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 7.8e-106 387.9 307 63.5
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 7.8e-106 387.9 313 63.9
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 1.7e-105 386.7 310 62.3
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 3.0e-105 386.0 275 69.5
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 6.6e-105 384.8 307 63.2
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 1.1e-104 384.0 313 64.2
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 1.1e-104 384.0 317 59.3
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.5e-104 383.6 319 62.1
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 5.6e-104 381.7 293 65.5
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 9.5e-104 380.9 341 57.2
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 1.2e-103 380.6 307 62.2
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.6e-103 380.2 320 61.9
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 2.1e-103 379.8 313 62.6
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 2.8e-103 379.4 307 62.5
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 3.6e-103 379.0 274 69.0
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 4.7e-103 378.6 310 61.6
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 8.9e-102 374.4 274 66.1
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 1.2e-101 374.0 333 58.3
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 5.8e-101 371.7 306 60.8
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 1.3e-100 370.5 306 60.5
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 2.2e-100 369.8 310 60.0
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 2.7e-98 362.8 292 64.0
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 8.1e-95 351.3 313 58.5
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 1.4e-94 350.5 261 67.4
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 2.4e-94 349.7 303 58.7
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 6.8e-94 348.2 308 57.5
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 2.6e-93 346.3 313 56.9
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 5.8e-93 345.1 241 67.2
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 5.8e-93 345.1 325 56.6
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 9.9e-93 344.4 306 55.2
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 9.9e-93 344.4 304 57.9
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 8.4e-92 341.3 313 56.2
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 9.3e-91 337.8 315 55.2
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.6e-90 337.0 313 57.8
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 1.1e-86 324.3 322 54.3
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.4e-86 323.9 317 53.6
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 6.9e-86 321.6 248 62.1
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.4e-84 314.7 319 53.3
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 9.6e-80 301.2 227 65.6
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 2.0e-77 293.5 310 51.9
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 1.8e-73 280.4 232 58.6
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 1.8e-73 280.4 173 83.2
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.5e-72 277.3 308 48.4
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 2.5e-72 276.6 203 67.0
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 9.6e-72 274.6 307 49.2
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 3.7e-71 272.7 455 39.6
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 2.9e-68 263.1 168 81.0
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 6.2e-63 245.4 210 61.9
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 2.9e-60 236.5 171 69.6
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.9e-59 233.8 186 62.4
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 5.5e-59 232.3 183 61.7
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 6.1e-58 228.8 268 48.1
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 7.9e-58 228.4 181 64.1
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 6.7e-57 225.3 164 66.5
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 1.5e-56 224.2 349 40.7
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 7.4e-56 221.9 197 54.3
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 9.0e-54 214.9 170 62.9
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 1.2e-53 214.5 216 54.2
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 1.7e-52 210.7 318 40.9
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 2.2e-52 210.3 148 70.3
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 4.6e-50 202.6 221 47.5
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.5e-48 197.6 232 48.3
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 2.0e-48 197.2 292 42.1
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 2.5e-48 196.8 227 48.0
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 4.1e-46 189.5 195 53.8
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 4.5e-45 186.0 138 67.4
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 3.8e-44 183.0 138 64.5
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 4.7e-42 176.0 308 39.3
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 2.3e-41 173.7 132 64.4
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.0e-41 173.3 182 56.6
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 9.1e-38 161.8 121 63.6
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 4.5e-37 159.5 149 56.4
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 5.9e-37 159.1 117 65.0
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 1.3e-36 157.9 170 45.9
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.7e-34 150.2 150 59.3
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 9.1e-30 135.2 106 65.1
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 6.8e-25 119.0 118 55.1
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 1.7e-23 114.4 116 55.2
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 6.5e-20 102.4 126 42.9
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.1e-19 101.7 62 79.0
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 1.1e-14 85.1 80 55.0
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 3.1e-14 83.6 80 53.8
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 1.6e-13 81.3 80 52.5
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.7e-13 80.5 92 50.0
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 5.6e-11 72.8 47 66.0
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 1.2e-10 71.6 61 57.4
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 3.0e-09 67.0 61 55.7
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 5.2e-09 66.2 45 71.1
TPR.G17539 Trifolium pratense HOM05D003898 ORTHO05D411187 8.9e-09 65.5 37 81.1
arahy.Tifrunner.gnm1.ann1.YUT84C Arachis hypogaea HOM05D003898 ORTHO05D004642 3.7e-07 60.1 40 77.5
Gohir.D02G117850 Gossypium hirsutum HOM05D034602 ORTHO05D048040 4.9e-07 59.7 36 72.2
Atru.chr5.2810 Acer truncatum HOM05D003898 ORTHO05D004642 1.1e-06 58.5 56 51.8
Gorai.007G225200 Gossypium raimondii HOM05D034602 ORTHO05D048040 1.4e-06 58.2 34 76.5


User provided reference genes

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