Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G100900 Glycine max HOM05D008046 ORTHO05D004477 8.0e-87 323.9 190 100.0
Glyma.04G099200 Glycine max HOM05D008046 ORTHO05D004477 1.9e-59 233.0 191 77.0
Phvul.009G032900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 6.4e-44 181.4 184 68.5
Lj1g0004298 Lotus japonicus HOM05D008046 ORTHO05D004477 5.0e-28 128.6 190 57.4
Lalb_Chr23g0270371 Lupinus albus HOM05D008046 ORTHO05D004477 1.5e-24 117.1 190 56.8
Lalb_Chr08g0242201 Lupinus albus HOM05D008046 ORTHO05D004477 3.3e-24 115.9 190 54.7
Glyma.02G209200 Glycine max HOM05D008046 ORTHO05D004477 5.9e-21 105.1 195 53.3
Lalb_Chr10g0102531 Lupinus albus HOM05D008046 ORTHO05D004477 7.7e-21 104.8 194 48.5
Glyma.14G177400 Glycine max HOM05D008046 ORTHO05D004477 5.5e-19 98.6 191 52.9
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 6.1e-18 95.1 179 51.4
TPR.G24247 Trifolium pratense HOM05D008046 ORTHO05D004477 1.8e-17 93.6 189 47.6
Medtr3g099490 Medicago truncatula HOM05D008046 ORTHO05D004477 3.0e-17 92.8 163 56.4
VMungo0647G1155 Vigna mungo HOM05D008046 ORTHO05D004477 2.2e-15 86.7 165 53.3
COL.COLO4_12009 Corchorus olitorius HOM05D008046 ORTHO05D004477 1.4e-14 84.0 189 43.9
Psat0s5249g0040 Pisum sativum HOM05D008046 ORTHO05D004477 1.8e-14 83.6 169 52.7
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 5.3e-14 82.0 178 51.1
Haze_18268 Corylus avellana HOM05D008046 ORTHO05D004477 9.1e-14 81.3 163 53.4
Haze_18269 Corylus avellana HOM05D008046 ORTHO05D004477 9.1e-14 81.3 163 53.4
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 1.2e-13 80.9 173 48.0
Potri.002G100500 Populus trichocarpa HOM05D008046 ORTHO05D004477 1.2e-13 80.9 178 43.8
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 2.0e-13 80.1 180 49.4
Phvul.008G176900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 4.5e-13 79.0 166 52.4
CiPaw.15G046100 Carya illinoinensis HOM05D008046 ORTHO05D004477 1.3e-12 77.4 185 47.6
Manes.02G149300 Manihot esculenta HOM05D008046 ORTHO05D004477 1.7e-12 77.0 161 54.0
Duzib093G0605 Durio zibethinus HOM05D008046 ORTHO05D004477 3.8e-12 75.9 158 55.1
Duzib041G0197 Durio zibethinus HOM05D008046 ORTHO05D004477 6.5e-12 75.1 188 49.5
Medtr5g064640 Medicago truncatula HOM05D008046 ORTHO05D004477 8.5e-12 74.7 172 43.0
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 8.5e-12 74.7 164 47.0
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 8.5e-12 74.7 150 40.0
Gohir.A01G132600 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.4e-11 73.9 168 41.7
Sabra02G0078700 Salix brachista HOM05D008046 ORTHO05D004477 1.4e-11 73.9 182 44.5
Ciclev10002675m.g Citrus clementina HOM05D008046 ORTHO05D004477 5.5e-11 72.0 165 44.8
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.7e-10 69.7 163 41.1
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 6.1e-10 68.6 163 41.1
RcHm_v2.0_Chr7g0242321 Rosa chinensis HOM05D018381 ORTHO05D004477 6.1e-10 68.6 192 38.0
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 1.4e-09 67.4 176 42.0
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.4e-09 67.4 172 39.0
CiPaw.16G033000 Carya illinoinensis HOM05D008046 ORTHO05D004477 1.8e-09 67.0 178 46.6
Prupe.1G522800 Prunus persica HOM05D018381 ORTHO05D004477 1.8e-09 67.0 164 47.0
Gorai.002G141100 Gossypium raimondii HOM05D008046 ORTHO05D004477 2.3e-09 66.6 168 47.6
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 3.0e-09 66.2 160 35.6
Gohir.A05G265833 Gossypium hirsutum HOM05D008046 ORTHO05D004477 3.9e-09 65.9 152 37.5
Manes.18G064000 Manihot esculenta HOM05D008046 ORTHO05D004477 3.9e-09 65.9 50 62.0
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 6.7e-09 65.1 161 45.3
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 6.7e-09 65.1 165 45.5
Gorai.005G094600 Gossypium raimondii HOM05D008046 ORTHO05D004477 6.7e-09 65.1 175 47.4
ClCG11G014290 Citrullus lanatus HOM05D026294 ORTHO05D004477 8.8e-09 64.7 163 43.6
Lsat_1_v5_gn_6_104300 Lactuca sativa HOM05D008046 ORTHO05D004477 1.1e-08 64.3 144 49.3
PGR031G3049 Punica granatum HOM05D008046 ORTHO05D004477 1.5e-08 63.9 173 48.0
Gohir.D02G084000 Gossypium hirsutum HOM05D008046 ORTHO05D004477 3.3e-08 62.8 180 45.0
TWI36G0888 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 3.3e-08 62.8 141 46.8
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 4.4e-08 62.4 146 49.3
Gohir.A02G076800 Gossypium hirsutum HOM05D008046 ORTHO05D004477 4.4e-08 62.4 173 46.8
DCAR_019289 Daucus carota HOM05D008046 ORTHO05D004477 5.7e-08 62.0 170 43.5
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.3e-07 60.8 146 43.2
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 1.3e-07 60.8 178 46.1
SGA_v2.0_scaffold45G17135 Striga asiatica HOM05D010872 ORTHO05D004477 1.3e-07 60.8 163 41.1
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 1.7e-07 60.5 159 47.8
Cpa.g.sc36.179 Carica papaya HOM05D008046 ORTHO05D004477 2.2e-07 60.1 152 47.4
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 3.7e-07 59.3 165 30.9
Sed0027320 Sechium edule HOM05D026294 ORTHO05D004477 3.7e-07 59.3 161 44.1
Lsat_1_v5_gn_1_3180 Lactuca sativa HOM05D008046 ORTHO05D004477 4.8e-07 58.9 158 40.5
Gohir.D05G267950 Gossypium hirsutum HOM05D008046 ORTHO05D004477 8.2e-07 58.2 152 37.5
Eucgr.B00040 Eucalyptus grandis HOM05D008046 ORTHO05D004477 1.1e-06 57.8 168 39.9
Gorai.009G280100 Gossypium raimondii HOM05D008046 ORTHO05D004477 1.1e-06 57.8 152 37.5
Sc26g0000200 Simmondsia chinensis HOM05D013332 ORTHO05D004477 1.1e-06 57.8 143 36.4
FAN04G3140 Fragaria x ananassa HOM05D018381 ORTHO05D004477 1.4e-06 57.4 173 41.0
FAN13G0458 Fragaria x ananassa HOM05D018381 ORTHO05D004477 1.4e-06 57.4 173 41.0
FAN18G3731 Fragaria x ananassa HOM05D018381 ORTHO05D004477 1.4e-06 57.4 173 43.4
Sc23g0000380 Simmondsia chinensis HOM05D008046 ORTHO05D004477 1.4e-06 57.4 143 35.0
FAN08G1425 Fragaria x ananassa HOM05D018381 ORTHO05D004477 1.8e-06 57.0 173 41.0
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 1.8e-06 57.0 159 32.1
unitig_32.g11784 Utricularia gibba HOM05D008046 ORTHO05D004477 1.8e-06 57.0 156 39.7
Aa31LG6G8650 Aethionema arabicum HOM05D010872 ORTHO05D013672 2.4e-06 56.6 39 64.1
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.4e-06 56.6 159 46.5
FvH4_5g36590 Fragaria vesca HOM05D018381 ORTHO05D004477 4.1e-06 55.8 173 42.8
BcaC05g27742 Brassica carinata HOM05D010872 ORTHO05D013672 5.3e-06 55.5 35 71.4
C05p37280 Brassica napus HOM05D010872 ORTHO05D013672 5.3e-06 55.5 35 71.4
BolC5t32474H Brassica oleracea HOM05D010872 ORTHO05D013672 5.3e-06 55.5 35 71.4
SalBow5G1479 Salvia bowleyana HOM05D008046 ORTHO05D004477 5.3e-06 55.5 154 40.9
THA.LOC104800226 Tarenaya hassleriana HOM05D009138 ORTHO05D011294 5.3e-06 55.5 34 76.5
MSTRG.3689 Avicennia marina HOM05D008046 ORTHO05D004477 7.0e-06 55.1 169 35.5
Carub.0001s2200 Capsella rubella HOM05D009138 ORTHO05D011294 7.0e-06 55.1 35 71.4
Migut.K01109 Erythranthe guttata HOM05D008046 ORTHO05D004477 7.0e-06 55.1 158 32.3
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 7.0e-06 55.1 152 31.6


User provided reference genes

Program Settings