Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 8.2e-180 633.6 328 100.0
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 1.2e-133 480.3 273 91.6
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 2.0e-125 453.0 329 73.6
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 2.3e-121 439.5 320 74.7
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 1.9e-112 409.8 329 67.5
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 3.3e-112 409.1 329 67.8
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 5.6e-112 408.3 328 67.4
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 8.1e-103 377.9 306 66.0
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 9.3e-99 364.4 361 58.4
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 4.6e-98 362.1 316 62.7
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 7.8e-98 361.3 326 60.4
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.3e-97 359.8 328 60.7
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.6e-95 353.6 380 55.5
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 2.8e-95 352.8 331 57.7
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 5.3e-94 348.6 331 58.0
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 6.9e-94 348.2 318 61.0
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 4.5e-93 345.5 329 56.5
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.7e-92 343.6 334 56.9
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 2.2e-92 343.2 331 57.7
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 2.9e-92 342.8 334 54.2
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 2.4e-91 339.7 332 56.9
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 4.2e-91 339.0 331 56.2
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 2.7e-90 336.3 333 56.5
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 3.5e-90 335.9 316 59.8
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 3.5e-90 335.9 362 55.2
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 4.6e-90 335.5 333 55.6
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.7e-89 333.6 326 57.7
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.7e-89 333.6 331 54.7
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 1.7e-89 333.6 333 57.7
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.1e-88 330.9 331 54.1
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.5e-88 330.5 331 55.3
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.9e-88 330.1 334 53.6
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.3e-88 329.3 324 53.7
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 4.8e-87 325.5 333 55.3
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 1.4e-86 323.9 324 57.1
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 3.1e-86 322.8 331 52.6
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 3.1e-86 322.8 332 53.0
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 5.3e-86 322.0 324 52.8
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 6.9e-86 321.6 324 52.8
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 9.0e-86 321.2 383 49.1
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.2e-85 320.9 328 54.3
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 1.5e-85 320.5 370 52.2
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 3.4e-85 319.3 332 52.7
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 9.9e-85 317.8 334 53.0
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 2.2e-84 316.6 331 56.2
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 6.4e-84 315.1 330 54.5
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.9e-83 313.5 333 54.4
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 4.2e-83 312.4 326 55.2
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 5.5e-83 312.0 334 53.6
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 1.2e-82 310.8 333 52.0
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 1.6e-82 310.5 333 51.4
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 1.6e-82 310.5 333 54.4
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 3.5e-82 309.3 338 53.6
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 4.6e-82 308.9 326 51.8
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 6.0e-82 308.5 330 50.9
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 7.9e-82 308.1 333 52.6
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 3.0e-81 306.2 340 52.6
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 7.4e-80 301.6 338 52.4
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 9.6e-80 301.2 333 52.6
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 8.1e-79 298.1 333 52.0
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.8e-78 297.0 331 48.9
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 2.4e-78 296.6 334 49.7
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 5.3e-78 295.4 332 48.5
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.2e-77 294.3 329 49.2
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.2e-77 294.3 333 49.5
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.5e-77 293.9 320 53.8
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 1.5e-77 293.9 334 52.4
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 4.5e-77 292.4 392 43.1
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 5.8e-77 292.0 334 50.0
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.3e-76 290.8 331 50.8
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.3e-76 290.8 332 50.9
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 3.2e-75 286.2 404 44.8
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 3.5e-74 282.7 335 50.1
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 4.6e-74 282.3 333 50.2
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 7.9e-74 281.6 392 42.6
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.8e-73 280.4 331 49.2
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 7.4e-72 275.0 333 49.2
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 9.6e-72 274.6 332 45.5
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 2.8e-71 273.1 332 48.5
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 3.7e-71 272.7 286 53.8
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 8.2e-71 271.6 333 49.5
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 2.4e-70 270.0 335 47.5
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 9.0e-70 268.1 305 51.5
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 3.8e-68 262.7 334 47.9
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 3.8e-68 262.7 334 47.9
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.8e-68 262.7 332 45.8
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 5.0e-68 262.3 327 47.7
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 8.5e-68 261.5 330 46.4
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 4.2e-67 259.2 333 45.3
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.8e-65 253.8 321 46.1
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 1.8e-65 253.8 334 47.0
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 2.3e-65 253.4 333 46.2
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 3.0e-65 253.1 321 46.4
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.9e-64 250.4 262 51.5
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 7.4e-64 248.4 341 45.2
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 9.7e-64 248.1 331 45.0
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.6e-63 247.3 391 41.4
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.8e-63 246.5 331 45.0
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.4e-62 244.2 333 46.2
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 9.1e-62 241.5 327 44.6
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 2.0e-61 240.4 330 43.6
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 2.6e-61 240.0 365 41.9
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.2e-60 236.9 329 44.1
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 2.2e-60 236.9 342 45.3
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 8.5e-60 235.0 348 42.8
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 8.8e-57 224.9 334 43.7
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 2.0e-56 223.8 334 42.8
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 3.3e-56 223.0 330 43.3
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 4.4e-56 222.6 303 46.5
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 2.2e-55 220.3 335 43.3
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 6.3e-55 218.8 364 40.4
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 5.3e-54 215.7 330 42.4
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 9.1e-54 214.9 269 48.3
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.2e-53 214.5 302 44.0
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 2.6e-53 213.4 290 45.5
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 3.8e-52 209.5 330 41.5
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 3.8e-52 209.5 330 41.5
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 8.5e-52 208.4 300 43.7
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 1.9e-51 207.2 307 42.0
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 5.5e-51 205.7 262 45.4
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 5.5e-51 205.7 263 46.4
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 9.4e-51 204.9 299 43.1
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.1e-50 203.8 310 42.6
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.8e-49 200.7 309 41.4
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 3.9e-49 199.5 299 42.5
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 2.6e-48 196.8 286 41.3
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.2e-47 193.7 389 36.2
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 8.2e-47 191.8 309 40.5
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 1.8e-46 190.7 330 40.9
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 1.8e-46 190.7 195 55.4
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 5.3e-46 189.1 296 42.6
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.5e-40 171.0 300 37.7
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.7e-40 169.1 279 39.4
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 9.1e-38 161.8 148 56.1
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 2.2e-36 157.1 317 35.3
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 2.9e-36 156.8 146 54.8
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 7.2e-35 152.1 182 49.5
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 2.1e-34 150.6 205 40.5
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 5.2e-33 146.0 178 49.4
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.2e-33 146.0 153 48.4
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 6.8e-33 145.6 153 48.4
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 3.4e-32 143.3 152 50.7
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 4.4e-32 142.9 327 33.3
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 7.5e-32 142.1 375 30.1
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 1.3e-31 141.4 222 41.0
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 1.3e-31 141.4 219 46.6
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 8.3e-31 138.7 253 39.1
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 9.1e-30 135.2 264 37.9
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 1.2e-29 134.8 135 61.5
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 2.7e-29 133.7 259 37.8
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 2.7e-29 133.7 151 49.7
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 4.5e-29 132.9 137 51.1
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 2.9e-28 130.2 136 60.3
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 7.2e-27 125.6 287 33.4
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 1.0e-25 121.7 311 31.5
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 1.8e-25 120.9 105 61.9
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 1.8e-25 120.9 130 50.0
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 5.2e-25 119.4 143 42.7
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.2e-23 114.0 376 26.1
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 3.7e-23 113.2 181 40.9
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 3.7e-23 113.2 181 40.9
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 4.1e-22 109.8 250 34.0
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 7.0e-22 109.0 194 39.7
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.5e-19 101.3 197 36.0
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 2.5e-19 100.5 328 28.4
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 1.6e-18 97.8 82 56.1
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 4.0e-17 93.2 278 29.5
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 2.6e-16 90.5 229 34.5
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 2.6e-16 90.5 229 34.5
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 9.2e-14 82.0 95 52.6
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 4.6e-13 79.7 84 48.8
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 5.9e-13 79.3 213 31.9
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.3e-12 78.2 211 31.8
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 2.5e-11 73.9 193 30.6
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 4.3e-11 73.2 102 48.0
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 4.7e-10 69.7 48 68.8
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 3.4e-08 63.5 60 51.7
RcHm_v2.0_Chr5g0049341 Rosa chinensis HOM05D003707 ORTHO05D004309 6.4e-07 59.3 91 48.4
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 7.0e-06 55.8 53 50.9


User provided reference genes

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