Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G099600 Glycine max HOM05D000048 ORTHO05D213915 7.1e-49 197.2 119 100.0
Glyma.04G097700 Glycine max HOM05D000048 ORTHO05D000436 2.9e-10 68.9 40 87.5
Medtr3g099720 Medicago truncatula HOM05D000048 ORTHO05D000436 1.4e-09 66.6 42 76.2
Phvul.009G034200 Phaseolus vulgaris HOM05D000048 ORTHO05D000436 2.5e-09 65.9 42 76.2
Psat5g048640 Pisum sativum HOM05D000048 ORTHO05D000436 4.2e-09 65.1 42 73.8
Ca_16028_v3 Cicer arietinum L. HOM05D000048 ORTHO05D000436 5.5e-09 64.7 42 76.2
VMungo1383G1730 Vigna mungo HOM05D000048 ORTHO05D434572 1.2e-08 63.5 42 73.8
Manes.18G062732 Manihot esculenta HOM05D000048 ORTHO05D000436 6.1e-08 61.2 42 71.4
Potri.005G160700 Populus trichocarpa HOM05D000048 ORTHO05D000436 6.1e-08 61.2 42 69.0
Sabra05G0121800 Salix brachista HOM05D000048 ORTHO05D000436 1.0e-07 60.5 52 59.6
Lj1g0003837 Lotus japonicus HOM05D000048 ORTHO05D000436 1.4e-07 60.1 42 71.4
COL.COLO4_11976 Corchorus olitorius HOM05D000048 ORTHO05D000436 1.8e-07 59.7 42 69.0
CSS0037424 Camellia sinensis var. sinensis HOM05D000048 ORTHO05D000436 6.7e-07 57.8 40 72.5
Eucgr.B00058 Eucalyptus grandis HOM05D000048 ORTHO05D000436 6.7e-07 57.8 42 66.7
FvH4_5g36160 Fragaria vesca HOM05D000048 ORTHO05D000436 6.7e-07 57.8 42 64.3
FAN04G1729 Fragaria x ananassa HOM05D000048 ORTHO05D000436 6.7e-07 57.8 42 64.3
FAN08G2878 Fragaria x ananassa HOM05D000048 ORTHO05D000436 6.7e-07 57.8 42 64.3
FAN18G0921 Fragaria x ananassa HOM05D000048 ORTHO05D000436 6.7e-07 57.8 42 64.3
Thecc.08G065000 Theobroma cacao HOM05D000048 ORTHO05D000436 1.1e-06 57.0 42 64.3
arahy.Tifrunner.gnm1.ann1.6P2K74 Arachis hypogaea HOM05D000048 ORTHO05D000436 1.5e-06 56.6 40 62.5
arahy.Tifrunner.gnm1.ann1.CU8EVV Arachis hypogaea HOM05D000048 ORTHO05D000436 1.5e-06 56.6 40 62.5
TAR376G0622 Trochodendron aralioides HOM05D000048 ORTHO05D000436 1.5e-06 56.6 40 67.5
RcHm_v2.0_Chr7g0237941 Rosa chinensis HOM05D000048 ORTHO05D000436 2.0e-06 56.2 42 64.3
GSVIVG01009105001 Vitis vinifera HOM05D000048 ORTHO05D000436 2.0e-06 56.2 40 67.5
Atru.chr13.1085 Acer truncatum HOM05D000048 ORTHO05D000436 2.6e-06 55.8 42 61.9
Gohir.D05G225200 Gossypium hirsutum HOM05D000048 ORTHO05D000436 3.3e-06 55.5 42 61.9
Gorai.009G232700 Gossypium raimondii HOM05D000048 ORTHO05D000436 3.3e-06 55.5 42 61.9
vmacro21933 Vaccinium macrocarpon HOM05D000048 ORTHO05D000436 3.3e-06 55.5 40 70.0
Actinidia30800 Actinidia chinensis HOM05D000048 ORTHO05D000436 4.4e-06 55.1 40 67.5
Gohir.A05G222500 Gossypium hirsutum HOM05D000048 ORTHO05D000436 4.4e-06 55.1 42 61.9
HanXRQChr05g0163211 Helianthus annuus HOM05D000048 ORTHO05D000436 4.4e-06 55.1 40 65.0
FAN13G3116 Fragaria x ananassa HOM05D000048 ORTHO05D000436 5.7e-06 54.7 40 65.0
Prupe.1G525300 Prunus persica HOM05D000048 ORTHO05D000436 5.7e-06 54.7 42 64.3
TAR376G0076 Trochodendron aralioides HOM05D000048 ORTHO05D000436 5.7e-06 54.7 40 57.5
vmacro21931 Vaccinium macrocarpon HOM05D000048 ORTHO05D000436 5.7e-06 54.7 40 65.0
Duzib116G0730 Durio zibethinus HOM05D000048 ORTHO05D000436 7.4e-06 54.3 42 61.9
TAR376G1227 Trochodendron aralioides HOM05D000048 ORTHO05D000436 7.4e-06 54.3 40 57.5
CANSAT25G2867 Cannabis sativa HOM05D000048 ORTHO05D000436 9.7e-06 53.9 42 61.9
Dinv44822 Davidia involucrata HOM05D000048 ORTHO05D000436 9.7e-06 53.9 40 62.5
PSO478G2130 Papaver somniferum HOM05D000048 ORTHO05D000436 9.7e-06 53.9 40 62.5
QL02p002076 Quercus lobata HOM05D000048 ORTHO05D000436 9.7e-06 53.9 40 65.0
SalBow7G2415 Salvia bowleyana HOM05D000048 ORTHO05D000436 9.7e-06 53.9 40 67.5


User provided reference genes

Program Settings