Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G096200 Glycine max HOM05D000108 ORTHO05D001407 2.8e-181 638.6 365 100.0
Glyma.04G094400 Glycine max HOM05D000108 ORTHO05D001407 3.0e-122 442.6 397 71.0
Phvul.002G296500 Phaseolus vulgaris HOM05D000108 ORTHO05D001407 8.1e-104 381.3 400 61.0
VMungo1080G0967 Vigna mungo HOM05D000108 ORTHO05D001407 4.6e-99 365.5 401 59.1
Ca_23442_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001407 5.5e-76 288.9 400 50.8
TPR.G6308 Trifolium pratense HOM05D000108 ORTHO05D001407 5.7e-73 278.9 407 49.6
Lj1g0007620 Lotus japonicus HOM05D000108 ORTHO05D001407 8.5e-69 265.0 370 50.5
Psat5g048800 Pisum sativum HOM05D000108 ORTHO05D001407 6.7e-66 255.4 406 46.1
Glyma.02G214300 Glycine max HOM05D000108 ORTHO05D001407 3.3e-65 253.1 417 45.3
Glyma.14G181800 Glycine max HOM05D000108 ORTHO05D001407 2.7e-62 243.4 419 44.2
Lalb_Chr17g0344541 Lupinus albus HOM05D000108 ORTHO05D001407 2.2e-61 240.4 402 45.0
Lalb_Chr08g0242511 Lupinus albus HOM05D000108 ORTHO05D001407 5.7e-57 225.7 425 42.4
VMungo0647G1798 Vigna mungo HOM05D000108 ORTHO05D001407 7.0e-55 218.8 383 43.9
arahy.Tifrunner.gnm1.ann1.IE7ZNS Arachis hypogaea HOM05D000108 ORTHO05D001407 2.0e-54 217.2 418 40.7
arahy.Tifrunner.gnm1.ann1.X6V3MP Arachis hypogaea HOM05D000108 ORTHO05D001407 2.7e-54 216.9 416 41.1
Lalb_Chr04g0252841 Lupinus albus HOM05D000108 ORTHO05D001407 1.6e-46 191.0 404 42.3
Phvul.008G181800 Phaseolus vulgaris HOM05D000108 ORTHO05D001407 1.9e-44 184.1 412 40.0
arahy.Tifrunner.gnm1.ann1.2IJU75 Arachis hypogaea HOM05D000108 ORTHO05D001407 1.0e-42 178.3 364 40.9
Ca_05438_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001407 5.2e-42 176.0 291 45.0
Medtr3g100270 Medicago truncatula HOM05D000108 ORTHO05D001407 1.5e-41 174.5 245 51.8
arahy.Tifrunner.gnm1.ann1.LTM5NF Arachis hypogaea HOM05D000108 ORTHO05D001407 4.4e-41 172.9 364 40.4
TPR.G34715 Trifolium pratense HOM05D000108 ORTHO05D001407 4.9e-40 169.5 398 38.4
LjContig00408g0023522 Lotus japonicus HOM05D000108 ORTHO05D001407 1.3e-37 161.4 274 46.4
Medtr5g066320 Medicago truncatula HOM05D000108 ORTHO05D001407 5.6e-36 156.0 391 40.7
Psat2g065520 Pisum sativum HOM05D000108 ORTHO05D001407 1.2e-35 154.8 401 40.6
FAN08G2169 Fragaria x ananassa HOM05D000108 ORTHO05D001407 1.8e-34 151.0 389 35.0
FAN18G4137 Fragaria x ananassa HOM05D000108 ORTHO05D001407 2.3e-34 150.6 389 35.0
FvH4_5g35340 Fragaria vesca HOM05D000108 ORTHO05D001407 4.0e-34 149.8 389 35.5
GSVIVG01009178001 Vitis vinifera HOM05D000108 ORTHO05D001407 4.0e-34 149.8 404 36.6
Duzib093G0656 Durio zibethinus HOM05D000108 ORTHO05D001407 5.8e-33 146.0 401 32.9
FAN04G1245 Fragaria x ananassa HOM05D000108 ORTHO05D001407 5.8e-33 146.0 389 34.7
Cpa.g.sc21.19 Carica papaya HOM05D000108 ORTHO05D001407 9.8e-33 145.2 407 32.7
FAN13G1922 Fragaria x ananassa HOM05D000108 ORTHO05D001407 9.8e-33 145.2 389 34.4
CiPaw.07G165600 Carya illinoinensis HOM05D000108 ORTHO05D001407 1.7e-32 144.4 411 36.7
Potri.005G150800 Populus trichocarpa HOM05D000108 ORTHO05D001407 8.3e-32 142.1 409 34.2
RcHm_v2.0_Chr7g0236691 Rosa chinensis HOM05D000108 ORTHO05D001407 8.3e-32 142.1 248 43.1
COL.COLO4_35247 Corchorus olitorius HOM05D000108 ORTHO05D001407 1.1e-31 141.7 403 33.7
Duzib116G0269 Durio zibethinus HOM05D000108 ORTHO05D001407 1.1e-31 141.7 403 34.0
Haze_22458 Corylus avellana HOM05D000108 ORTHO05D001407 1.4e-31 141.4 382 35.3
Thecc.08G070900 Theobroma cacao HOM05D000108 ORTHO05D001407 1.9e-31 141.0 404 34.4
Ciclev10000037m.g Citrus clementina HOM05D000108 ORTHO05D001407 5.4e-31 139.4 416 33.7
Prupe.1G532000 Prunus persica HOM05D000108 ORTHO05D001407 7.0e-31 139.0 403 33.3
TAR625G0090 Trochodendron aralioides HOM05D000108 ORTHO05D001407 7.0e-31 139.0 428 30.6
Atru.chr13.1012 Acer truncatum HOM05D000108 ORTHO05D001407 1.2e-30 138.3 417 32.1
Sabra02G0083300 Salix brachista HOM05D000108 ORTHO05D001407 2.7e-30 137.1 430 31.9
TWI12G0680 Tripterygium wilfordii HOM05D000108 ORTHO05D001407 2.7e-30 137.1 409 33.5
TWI36G0449 Tripterygium wilfordii HOM05D000108 ORTHO05D001407 6.0e-30 136.0 423 32.2
CANSAT25G3236 Cannabis sativa HOM05D000108 ORTHO05D001407 6.6e-29 132.5 407 30.0
Gohir.A05G219500 Gossypium hirsutum HOM05D000108 ORTHO05D001407 1.5e-28 131.3 409 32.3
CANSAT25G0259 Cannabis sativa HOM05D000108 ORTHO05D001407 2.5e-28 130.6 416 30.8
MD08G1198000 Malus domestica HOM05D000108 ORTHO05D001407 3.3e-28 130.2 411 33.8
Gorai.009G229400 Gossypium raimondii HOM05D000108 ORTHO05D001407 4.3e-28 129.8 407 31.9
Nn5g29882 Nelumbo nucifera HOM05D000108 ORTHO05D001407 1.2e-27 128.3 422 30.6
QL09p017790 Quercus lobata HOM05D000108 ORTHO05D001407 1.2e-27 128.3 413 31.7
Eucgr.F00421 Eucalyptus grandis HOM05D000108 ORTHO05D001407 1.6e-27 127.9 424 31.6
THA.LOC104799089 Tarenaya hassleriana HOM05D000108 ORTHO05D001407 2.1e-27 127.5 418 31.6
AUR62014346 Chenopodium quinoa HOM05D000108 ORTHO05D001407 6.2e-27 125.9 394 32.7
Gohir.D05G222000 Gossypium hirsutum HOM05D000108 ORTHO05D001407 1.1e-26 125.2 407 31.9
Cfa013795 Carpinus fangiana HOM05D000108 ORTHO05D001407 1.4e-26 124.8 383 36.0
Actinidia10275 Actinidia chinensis HOM05D000108 ORTHO05D001407 2.3e-26 124.0 420 32.4
AUR62019089 Chenopodium quinoa HOM05D000108 ORTHO05D001407 4.0e-26 123.2 394 32.5
Sed0004579 Sechium edule HOM05D000108 ORTHO05D001407 5.2e-26 122.9 414 31.6
MELO3C003524.2 Cucumis melo HOM05D000108 ORTHO05D001407 8.9e-26 122.1 412 31.1
Potri.002G106000 Populus trichocarpa HOM05D000108 ORTHO05D001407 8.9e-26 122.1 425 31.5
Sed0014402 Sechium edule HOM05D000108 ORTHO05D001407 2.6e-25 120.6 421 31.4
Hund26815 Selenicereus undatus HOM05D000108 ORTHO05D001407 7.5e-25 119.0 407 31.9
Aqoxy6G00873 Aquilegia oxysepala HOM05D000108 ORTHO05D001407 1.3e-24 118.2 419 30.5
CsaV3_3G047980 Cucumis sativus L. HOM05D000108 ORTHO05D001407 1.3e-24 118.2 409 30.3
MD15G1385300 Malus domestica HOM05D000108 ORTHO05D001407 1.3e-24 118.2 406 32.0
CSS0046831 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001407 4.9e-24 116.3 293 34.5
ClCG11G014560 Citrullus lanatus HOM05D000108 ORTHO05D001407 6.4e-24 115.9 417 31.2
Ah.05g171180 Amaranthus hybridus HOM05D000108 ORTHO05D001407 8.3e-24 115.5 405 30.1
Actinidia19242 Actinidia chinensis HOM05D000108 ORTHO05D001407 3.2e-23 113.6 276 36.2
Dinv42613 Davidia involucrata HOM05D000108 ORTHO05D001407 1.0e-21 108.6 422 30.8
Gohir.D06G031600 Gossypium hirsutum HOM05D000108 ORTHO05D001407 1.3e-21 108.2 368 31.8
Manes.18G058800 Manihot esculenta HOM05D000108 ORTHO05D001407 1.3e-21 108.2 444 29.1
C07p44710 Brassica napus HOM05D000108 ORTHO05D001407 1.7e-21 107.8 264 33.7
BolC7t44994H Brassica oleracea HOM05D000108 ORTHO05D001407 1.7e-21 107.8 264 33.7
GSVIVG01009180001 Vitis vinifera HOM05D000108 ORTHO05D010239 2.3e-21 107.5 225 40.0
MBI16_g12464_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001407 3.0e-21 107.1 335 31.3
Dinv44861 Davidia involucrata HOM05D000108 ORTHO05D001407 1.1e-20 105.1 402 30.1
Gohir.A06G032400 Gossypium hirsutum HOM05D000108 ORTHO05D001407 1.1e-20 105.1 369 30.6
Rhsim06G0071700 Rhododendron simsii HOM05D000108 ORTHO05D001407 1.1e-20 105.1 343 30.6
vmacro21339 Vaccinium macrocarpon HOM05D000108 ORTHO05D001407 1.5e-20 104.8 340 30.3
Prupe.1G532100 Prunus persica HOM05D000108 ORTHO05D010239 3.3e-20 103.6 234 36.3
Hund17282 Selenicereus undatus HOM05D000108 ORTHO05D001407 9.5e-20 102.1 400 27.8
Oeu061173.1 Olea europaea HOM05D000108 ORTHO05D001407 1.2e-19 101.7 280 34.3
MD08G1198100 Malus domestica HOM05D000108 ORTHO05D010239 1.6e-19 101.3 234 34.2
Aa31LG11G2370 Aethionema arabicum HOM05D000108 ORTHO05D001407 2.1e-19 100.9 282 34.4
Thhalv10003526m.g Eutrema salsugineum HOM05D000108 ORTHO05D001407 2.8e-19 100.5 263 34.6
A03p46640 Brassica napus HOM05D000108 ORTHO05D001407 4.7e-19 99.8 270 32.6
BraA03t13788Z Brassica rapa HOM05D000108 ORTHO05D001407 4.7e-19 99.8 270 32.6
CDE01G0713 Ceratophyllum demersum HOM05D000108 ORTHO05D001407 8.1e-19 99.0 249 34.5
Sp2g24240 Schrenkiella parvula HOM05D000108 ORTHO05D001407 8.1e-19 99.0 273 33.3
PSO675G4151 Papaver somniferum HOM05D000108 ORTHO05D001407 1.4e-18 98.2 413 29.1
C02p61270 Brassica napus HOM05D000108 ORTHO05D001407 3.1e-18 97.1 262 34.0
A02p41300 Brassica napus HOM05D000108 ORTHO05D001407 5.2e-18 96.3 262 35.1
BcaC03g18065 Brassica carinata HOM05D000108 ORTHO05D001407 8.9e-18 95.5 262 33.6
Nn1g05573 Nelumbo nucifera HOM05D000108 ORTHO05D001407 8.9e-18 95.5 424 28.3
Gorai.010G034800 Gossypium raimondii HOM05D000108 ORTHO05D001407 1.2e-17 95.1 278 33.1
MD15G1385400 Malus domestica HOM05D000108 ORTHO05D010239 2.0e-17 94.4 129 45.7
EL10Ac1g00999 Beta vulgaris HOM05D000108 ORTHO05D001407 2.6e-17 94.0 400 29.0
BcaC06g33206 Brassica carinata HOM05D000108 ORTHO05D001407 3.4e-17 93.6 264 33.3
BraA02t09076Z Brassica rapa HOM05D000108 ORTHO05D001407 4.4e-17 93.2 259 35.5
CAN.G475.30 Capsicum annuum HOM05D000108 ORTHO05D001407 7.6e-17 92.4 304 30.6
BolC2t12173H Brassica oleracea HOM05D000108 ORTHO05D001407 1.3e-16 91.7 256 33.6
DCAR_019314 Daucus carota HOM05D000108 ORTHO05D001407 1.7e-16 91.3 311 34.4
CiPaw.07G165500 Carya illinoinensis HOM05D000108 ORTHO05D010239 2.2e-16 90.9 258 31.0
RcHm_v2.0_Chr7g0236371 Rosa chinensis HOM05D000108 ORTHO05D010239 2.2e-16 90.9 144 38.9
Medtr3g100250 Medicago truncatula HOM05D000108 ORTHO05D001407 3.7e-16 90.1 162 43.2
Cc10_g15880 Coffea canephora HOM05D000108 ORTHO05D001407 4.9e-16 89.7 437 27.7
DCAR_012856 Daucus carota HOM05D000108 ORTHO05D001407 4.9e-16 89.7 450 29.3
BcaC03g18062 Brassica carinata HOM05D000108 ORTHO05D001407 2.4e-15 87.4 206 34.0
Cfa013796 Carpinus fangiana HOM05D000108 ORTHO05D010239 2.4e-15 87.4 236 33.1
Haze_22459 Corylus avellana HOM05D000108 ORTHO05D010239 2.4e-15 87.4 226 33.2
Nitab4.5_0000131g0280 Nicotiana tabacum HOM05D000108 ORTHO05D001407 2.4e-15 87.4 126 45.2
FAN13G2627 Fragaria x ananassa HOM05D000108 ORTHO05D010239 3.2e-15 87.0 196 32.1
FAN08G2432 Fragaria x ananassa HOM05D000108 ORTHO05D010239 5.4e-15 86.3 254 29.5
FAN18G4321 Fragaria x ananassa HOM05D000108 ORTHO05D010239 5.4e-15 86.3 254 29.5
AL8G37550 Arabidopsis lyrata HOM05D000108 ORTHO05D001407 7.1e-15 85.9 424 29.5
FvH4_5g35240 Fragaria vesca HOM05D000108 ORTHO05D010239 9.2e-15 85.5 225 30.7
Os02g0742800 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D001407 2.1e-14 84.3 377 25.5
Peaxi162Scf00454g00515 Petunia axillaris HOM05D000108 ORTHO05D010239 3.5e-14 83.6 114 44.7
Migut.N02859 Erythranthe guttata HOM05D000108 ORTHO05D001407 4.6e-14 83.2 275 31.6
RcHm_v2.0_Chr6g0258621 Rosa chinensis HOM05D000108 ORTHO05D010239 4.6e-14 83.2 225 31.1
Duzib093G0215 Durio zibethinus HOM05D000108 ORTHO05D010239 6.0e-14 82.8 165 40.0
AT5G60930 Arabidopsis thaliana HOM05D000108 ORTHO05D001407 7.8e-14 82.4 430 29.1
Gohir.A06G032300 Gossypium hirsutum HOM05D000108 ORTHO05D010239 7.8e-14 82.4 119 41.2
Oeu039158.1 Olea europaea HOM05D000108 ORTHO05D010239 7.8e-14 82.4 315 28.6
unitig_21.g20613 Utricularia gibba HOM05D000108 ORTHO05D001407 7.8e-14 82.4 263 30.8
Lj4C737G6 Lonicera japonica HOM05D000076 ORTHO05D003143 1.3e-13 81.6 427 27.6
Nitab4.5_0010888g0010 Nicotiana tabacum HOM05D000108 ORTHO05D001407 1.3e-13 81.6 287 30.0
Gohir.D06G031500 Gossypium hirsutum HOM05D000108 ORTHO05D010239 1.7e-13 81.3 119 42.0
TAR381G1095 Trochodendron aralioides HOM05D000108 ORTHO05D001407 1.7e-13 81.3 389 28.8
Gorai.010G034700 Gossypium raimondii HOM05D000108 ORTHO05D010239 2.3e-13 80.9 225 31.1
Sopen04g030110 Solanum pennellii HOM05D000108 ORTHO05D001407 3.0e-13 80.5 266 32.7
TWI56G1192 Tripterygium wilfordii HOM05D000108 ORTHO05D010239 3.0e-13 80.5 158 37.3
MSTRG.24429 Avicennia marina HOM05D000108 ORTHO05D001407 3.9e-13 80.1 419 27.7
Lj1g0020667 Lotus japonicus HOM05D000108 ORTHO05D010239 5.1e-13 79.7 203 34.5
Medtr3g100230 Medicago truncatula HOM05D000108 ORTHO05D010239 5.1e-13 79.7 227 30.4
Duzib041G0116 Durio zibethinus HOM05D000108 ORTHO05D010239 8.6e-13 79.0 125 42.4
VMungo1309G0378 Vigna mungo HOM05D000108 ORTHO05D010239 1.1e-12 78.6 237 32.9
Ciclev10001077m.g Citrus clementina HOM05D000108 ORTHO05D010239 1.5e-12 78.2 235 32.3
QL09p017810 Quercus lobata HOM05D000108 ORTHO05D010239 1.9e-12 77.8 128 39.1
unitig_744.g24110 Utricularia gibba HOM05D000108 ORTHO05D001407 1.9e-12 77.8 246 32.1
arahy.Tifrunner.gnm1.ann1.CYPG82 Arachis hypogaea HOM05D000108 ORTHO05D010239 2.5e-12 77.4 236 32.6
CANSAT25G3032 Cannabis sativa HOM05D000108 ORTHO05D010239 2.5e-12 77.4 216 29.2
Ca_23441_v3 Cicer arietinum L. HOM05D000108 ORTHO05D010239 2.5e-12 77.4 201 30.8
COL.COLO4_35248 Corchorus olitorius HOM05D000108 ORTHO05D010239 4.3e-12 76.6 203 33.0
arahy.Tifrunner.gnm1.ann1.8QVC7G Arachis hypogaea HOM05D000108 ORTHO05D010239 5.6e-12 76.3 235 31.9
Phvul.009G036700 Phaseolus vulgaris HOM05D000108 ORTHO05D010239 5.6e-12 76.3 231 32.0
PSO541G4558 Papaver somniferum HOM05D000108 ORTHO05D001407 7.3e-12 75.9 418 26.8
Potri.002G106100 Populus trichocarpa HOM05D000108 ORTHO05D010239 9.6e-12 75.5 263 28.9
SGA_v2.0_scaffold48G17831 Striga asiatica HOM05D000108 ORTHO05D001407 9.6e-12 75.5 253 32.0
PGR031G1243 Punica granatum HOM05D000108 ORTHO05D010239 1.2e-11 75.1 237 32.9
ATR0767G045 Amborella trichopoda HOM05D000108 ORTHO05D001407 1.6e-11 74.7 197 33.5
Lsat_1_v5_gn_6_104981 Lactuca sativa HOM05D000108 ORTHO05D001407 1.6e-11 74.7 280 31.1
HPP92_010913 Vanilla planifolia HOM05D000108 ORTHO05D001407 1.6e-11 74.7 177 35.0
Lalb_Chr08g0242521 Lupinus albus HOM05D000108 ORTHO05D010239 2.8e-11 73.9 223 28.7
Carub.0008s2162 Capsella rubella HOM05D000108 ORTHO05D001407 4.7e-11 73.2 278 30.6
Atru.chr13.1010 Acer truncatum HOM05D000108 ORTHO05D010239 6.2e-11 72.8 193 30.6
Glyma.06G096600 Glycine max HOM05D000108 ORTHO05D010239 6.2e-11 72.8 345 27.2
CARHR274610 Cardamine hirsuta HOM05D000108 ORTHO05D001407 8.1e-11 72.4 421 28.0
Sabra02G0083400 Salix brachista HOM05D000108 ORTHO05D010239 1.1e-10 72.0 266 30.8
AT5G33300 Arabidopsis thaliana HOM05D000108 ORTHO05D010239 1.8e-10 71.2 208 26.9
PGSC0003DMG400009361 Solanum tuberosum HOM05D000108 ORTHO05D001407 2.4e-10 70.9 256 31.6
Eucgr.F02150 Eucalyptus grandis HOM05D000108 ORTHO05D010239 6.8e-10 69.3 186 31.2
Manes.18G058700 Manihot esculenta HOM05D000108 ORTHO05D010239 6.8e-10 69.3 210 31.9
AL7G43760 Arabidopsis lyrata HOM05D000108 ORTHO05D010239 2.0e-09 67.8 208 28.8
CARHR286840 Cardamine hirsuta HOM05D000108 ORTHO05D010239 2.0e-09 67.8 219 27.4
Glyma.04G094700 Glycine max HOM05D000108 ORTHO05D010239 5.8e-09 66.2 92 40.2
Psat5g048840 Pisum sativum HOM05D000108 ORTHO05D010239 7.6e-09 65.9 226 28.8
BcaB04g18075 Brassica carinata HOM05D000108 ORTHO05D010239 9.9e-09 65.5 150 30.7
A08p10020 Brassica napus HOM05D000108 ORTHO05D010239 2.2e-08 64.3 215 28.8
Sed0019033 Sechium edule HOM05D000108 ORTHO05D010239 2.2e-08 64.3 57 54.4
Aa31csc22G170 Aethionema arabicum HOM05D000108 ORTHO05D010239 2.9e-08 63.9 211 25.1
BraA08t32998Z Brassica rapa HOM05D000108 ORTHO05D010239 4.9e-08 63.2 215 28.4
Carub.0007s3070 Capsella rubella HOM05D000108 ORTHO05D010239 4.9e-08 63.2 208 30.3
THA.LOC104801708 Tarenaya hassleriana HOM05D000108 ORTHO05D010239 1.4e-07 61.6 157 28.0
RcHm_v2.0_Chr6g0258581 Rosa chinensis HOM05D000108 ORTHO05D010239 1.2e-06 58.5 209 28.2
TPR.G6375 Trifolium pratense HOM05D000108 ORTHO05D010239 1.6e-06 58.2 222 27.0
CsaV3_2G030260 Cucumis sativus L. HOM05D000108 ORTHO05D010239 2.1e-06 57.8 62 45.2
BcaC07g37693 Brassica carinata HOM05D000108 ORTHO05D010239 2.7e-06 57.4 169 29.0
BolC8t48063H Brassica oleracea HOM05D000108 ORTHO05D010239 2.7e-06 57.4 215 27.0
Carub.0004s0906 Capsella rubella HOM05D000108 ORTHO05D001407 2.7e-06 57.4 206 29.1
Actinidia33570 Actinidia chinensis HOM05D000108 ORTHO05D030886 6.0e-06 56.2 231 31.2
Lj4C718T3 Lonicera japonica HOM05D000108 ORTHO05D001407 7.8e-06 55.8 246 26.8


User provided reference genes

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