Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 1.2e-275 952.6 489 100.0
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 2.0e-251 872.1 489 92.2
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 2.6e-246 855.1 489 89.0
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 1.7e-221 772.7 462 85.5
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 9.6e-217 756.9 490 80.0
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 8.9e-215 750.4 502 78.1
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 1.2e-214 750.0 490 79.8
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 2.0e-206 722.6 489 76.7
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 2.0e-206 722.6 459 80.6
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 8.4e-205 717.2 489 76.9
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 9.6e-201 703.7 490 74.3
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 1.4e-199 699.9 490 73.9
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 1.8e-186 656.4 489 72.4
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 1.7e-173 613.2 489 64.2
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 8.5e-173 610.9 486 64.8
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 1.4e-172 610.1 498 63.5
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 2.5e-172 609.4 486 64.6
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 3.2e-172 609.0 488 65.2
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 7.9e-171 604.4 487 63.9
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 1.1e-169 600.5 486 64.4
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 3.3e-169 599.0 486 64.0
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 3.7e-168 595.5 500 63.4
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 1.4e-167 593.6 499 61.5
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 1.8e-167 593.2 503 61.6
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 4.1e-167 592.0 492 63.8
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 4.1e-167 592.0 519 61.7
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 1.5e-166 590.1 439 67.9
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 2.6e-166 589.3 493 61.7
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 1.3e-165 587.0 499 61.3
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 1.3e-165 587.0 499 61.5
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.6e-163 580.1 494 61.9
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 3.6e-163 578.9 466 64.6
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 1.4e-162 577.0 496 61.9
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 2.3e-162 576.2 494 61.3
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 3.9e-162 575.5 494 61.5
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 2.0e-161 573.2 500 60.6
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 1.4e-159 567.0 464 63.6
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 1.4e-159 567.0 489 61.6
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 5.3e-159 565.1 492 60.6
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 4.5e-158 562.0 439 64.5
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 1.7e-157 560.1 490 59.8
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 1.9e-156 556.6 461 63.6
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 2.5e-156 556.2 490 61.2
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 2.5e-156 556.2 492 60.4
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 9.4e-156 554.3 493 59.2
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 1.4e-154 550.4 498 57.4
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 3.0e-154 549.3 495 58.2
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 3.3e-153 545.8 488 57.6
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 9.7e-153 544.3 488 59.8
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 3.7e-152 542.3 494 58.5
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 6.3e-152 541.6 486 60.5
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 6.3e-152 541.6 568 53.3
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 1.1e-151 540.8 490 57.8
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 9.1e-151 537.7 488 56.1
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 1.7e-149 533.5 486 59.3
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 2.5e-148 529.6 503 56.3
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 2.5e-148 529.6 495 58.8
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 1.0e-146 524.2 412 62.6
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 1.8e-146 523.5 497 55.1
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 6.8e-146 521.5 497 55.1
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 1.3e-144 517.3 493 55.8
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 3.7e-144 515.8 479 55.7
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 3.5e-142 509.2 499 53.9
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 3.5e-142 509.2 485 55.3
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 3.8e-141 505.8 487 57.3
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 3.8e-141 505.8 485 55.1
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 9.4e-140 501.1 488 55.7
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 9.4e-140 501.1 492 55.7
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 1.2e-139 500.7 499 54.3
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 1.2e-139 500.7 487 53.8
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 1.6e-139 500.4 496 53.0
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 2.1e-139 500.0 453 58.1
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 4.7e-139 498.8 478 54.0
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 4.7e-139 498.8 489 54.4
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 1.8e-138 496.9 517 52.2
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 1.8e-138 496.9 495 53.9
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 1.1e-135 487.6 496 52.4
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 1.4e-135 487.3 490 53.9
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 3.1e-135 486.1 395 64.1
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 5.4e-135 485.3 361 67.3
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 1.2e-134 484.2 490 53.5
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 3.5e-134 482.6 491 53.8
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 7.7e-134 481.5 485 53.8
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 1.0e-133 481.1 437 56.5
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 1.6e-131 473.8 490 52.2
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 1.6e-131 473.8 490 52.2
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 2.1e-131 473.4 494 53.2
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 3.0e-130 469.5 495 52.1
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.5e-129 467.2 548 49.8
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 2.9e-128 463.0 495 52.7
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 3.3e-124 449.5 385 60.3
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 1.4e-122 444.1 499 48.7
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 1.5e-121 440.7 520 47.9
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 2.4e-119 433.3 361 63.2
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 4.6e-118 429.1 492 49.8
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 1.9e-116 423.7 356 61.0
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 9.8e-113 411.4 396 55.1
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 3.7e-112 409.5 489 45.4
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 1.9e-111 407.1 487 45.2
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 4.7e-99 365.9 481 44.5
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 1.4e-95 354.4 399 49.1
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 5.4e-95 352.4 490 42.2
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 4.0e-90 336.3 498 42.8
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 5.3e-90 335.9 351 53.0
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 2.0e-89 334.0 251 68.1
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 5.5e-71 272.7 498 36.1
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 3.7e-67 260.0 236 58.9
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 2.4e-66 257.3 432 36.6
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 2.1e-62 244.2 287 46.7
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 4.6e-62 243.0 187 65.8
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 3.9e-61 240.0 272 48.9
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 5.0e-56 223.0 357 40.1
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 8.5e-56 222.2 415 37.8
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 4.2e-55 219.9 170 61.8
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 8.8e-53 212.2 275 42.5
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 2.0e-44 184.5 282 41.5
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 7.4e-44 182.6 231 44.2
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 6.3e-43 179.5 137 65.0
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 1.8e-42 177.9 137 66.4
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 3.2e-39 167.2 107 72.0
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 3.0e-37 160.6 398 29.1
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 1.3e-35 155.2 348 32.8
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 5.9e-33 146.4 170 46.5
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 5.9e-33 146.4 257 38.1
COL.COLO4_23153 Corchorus olitorius HOM05D005719 ORTHO05D007030 3.7e-27 127.1 163 47.9
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 4.8e-27 126.7 130 50.0
SEGI_36882 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 6.3e-27 126.3 142 50.7
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 3.2e-23 114.0 109 57.8
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 6.1e-22 109.8 136 47.1
SEGI_23985 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 5.7e-12 76.6 106 39.6
Lju279C4T1 Lonicera japonica HOM05D005719 ORTHO05D007030 2.9e-11 74.3 109 45.0
C05p32060 Brassica napus HOM05D005719 ORTHO05D007030 8.6e-08 62.8 89 50.6
BolC5t31933H Brassica oleracea HOM05D005719 ORTHO05D007030 8.6e-08 62.8 89 50.6
Cre12.g551000 Chlamydomonas reinhardtii HOM05D005719 ORTHO05D007030 1.9e-07 61.6 153 27.5


User provided reference genes

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