Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G090000 Glycine max HOM05D000397 ORTHO05D000492 3.4e-100 368.2 176 100.0
Glyma.07G196500 Glycine max HOM05D000397 ORTHO05D000492 1.4e-90 336.3 167 97.6
Glyma.13G179600 Glycine max HOM05D000397 ORTHO05D000492 2.3e-80 302.4 167 89.2
Phvul.002G233800 Phaseolus vulgaris HOM05D000397 ORTHO05D000492 5.7e-71 271.2 167 79.6
VMungo0251G2056 Vigna mungo HOM05D000397 ORTHO05D000492 3.7e-70 268.5 168 79.8
arahy.Tifrunner.gnm1.ann1.U3L3I1 Arachis hypogaea HOM05D000397 ORTHO05D000492 6.3e-62 241.1 164 73.2
arahy.Tifrunner.gnm1.ann1.JBS4N0 Arachis hypogaea HOM05D000397 ORTHO05D000492 4.1e-61 238.4 164 72.6
Psat7g113760 Pisum sativum HOM05D000397 ORTHO05D000492 8.6e-59 230.7 166 68.1
Lj4g0005199 Lotus japonicus HOM05D000397 ORTHO05D000492 1.5e-58 229.9 167 71.3
Medtr4g088835 Medicago truncatula HOM05D000397 ORTHO05D000492 1.2e-55 220.3 165 67.9
Lalb_Chr16g0383751 Lupinus albus HOM05D000397 ORTHO05D000492 4.4e-55 218.4 164 67.7
arahy.Tifrunner.gnm1.ann1.FE9WNQ Arachis hypogaea HOM05D000397 ORTHO05D000492 3.7e-54 215.3 162 67.3
TPR.G12023 Trifolium pratense HOM05D000397 ORTHO05D000492 9.2e-53 210.7 166 66.3
Glyma.15G074200 Glycine max HOM05D000397 ORTHO05D000492 1.7e-51 206.5 166 65.7
VMungo0540G0368 Vigna mungo HOM05D000397 ORTHO05D000492 1.7e-51 206.5 166 63.3
Lalb_Chr20g0121891 Lupinus albus HOM05D000397 ORTHO05D000492 2.3e-51 206.1 158 67.7
Ca_18544_v3 Cicer arietinum L. HOM05D000397 ORTHO05D000492 5.6e-50 201.4 165 64.2
Phvul.006G185400 Phaseolus vulgaris HOM05D000397 ORTHO05D000492 5.6e-50 201.4 167 62.9
Glyma.13G239100 Glycine max HOM05D000397 ORTHO05D000492 2.1e-49 199.5 165 64.8
arahy.Tifrunner.gnm1.ann1.TD0Y44 Arachis hypogaea HOM05D000397 ORTHO05D000492 1.4e-48 196.8 187 57.2
arahy.Tifrunner.gnm1.ann1.QBTG1H Arachis hypogaea HOM05D000397 ORTHO05D000492 1.8e-48 196.4 208 52.9
Lj6g0003717 Lotus japonicus HOM05D000397 ORTHO05D000492 6.8e-48 194.5 162 63.6
arahy.Tifrunner.gnm1.ann1.Q0GMZ4 Arachis hypogaea HOM05D000602 ORTHO05D011536 8.9e-48 194.1 187 57.8
Medtr2g013650 Medicago truncatula HOM05D000397 ORTHO05D000492 4.9e-46 188.3 161 61.5
TPR.G16516 Trifolium pratense HOM05D000397 ORTHO05D000492 4.1e-45 185.3 162 59.9
Psat1g204960 Pisum sativum HOM05D000397 ORTHO05D000492 7.8e-44 181.0 162 60.5
Ca_00336_v3 Cicer arietinum L. HOM05D000397 ORTHO05D000492 1.1e-42 177.2 152 62.5
Medtr4g020620 Medicago truncatula HOM05D000397 ORTHO05D000492 2.3e-40 169.5 161 58.4
Haze_06457 Corylus avellana HOM05D000397 ORTHO05D000492 9.5e-34 147.5 164 48.8
Psat3g052560 Pisum sativum HOM05D000397 ORTHO05D000492 9.5e-34 147.5 162 51.2
Cfa000460 Carpinus fangiana HOM05D000397 ORTHO05D000492 2.8e-33 146.0 164 48.8
arahy.Tifrunner.gnm1.ann1.R2Q3Y9 Arachis hypogaea HOM05D000602 ORTHO05D001147 6.4e-30 134.8 89 70.8
QL05p040418 Quercus lobata HOM05D000397 ORTHO05D000492 1.4e-29 133.7 158 50.0
CiPaw.09G060300 Carya illinoinensis HOM05D000397 ORTHO05D000492 3.2e-29 132.5 174 44.8
CiPaw.10G048200 Carya illinoinensis HOM05D000397 ORTHO05D000492 1.2e-28 130.6 164 43.9
Prupe.4G047400 Prunus persica HOM05D000397 ORTHO05D000492 2.1e-28 129.8 162 47.5
RcHm_v2.0_Chr5g0008401 Rosa chinensis HOM05D000397 ORTHO05D000492 1.0e-27 127.5 152 47.4
arahy.Tifrunner.gnm1.ann1.8ZK7KB Arachis hypogaea HOM05D000397 ORTHO05D000492 1.3e-27 127.1 187 41.7
Atru.chr10.1877 Acer truncatum HOM05D000397 ORTHO05D000492 5.6e-26 121.7 159 45.9
Dinv40562 Davidia involucrata HOM05D000397 ORTHO05D000492 7.3e-26 121.3 159 45.9
Eucgr.D00620 Eucalyptus grandis HOM05D000397 ORTHO05D000492 2.1e-25 119.8 140 44.3
FAN11G3874 Fragaria x ananassa HOM05D000397 ORTHO05D000492 4.7e-25 118.6 160 45.6
FvH4_3g29950 Fragaria vesca HOM05D000397 ORTHO05D000492 8.1e-25 117.9 160 45.0
FAN16G0766 Fragaria x ananassa HOM05D000397 ORTHO05D000492 8.1e-25 117.9 152 46.1
GSVIVG01005206001 Vitis vinifera HOM05D000397 ORTHO05D000492 8.1e-25 117.9 158 45.6
FAN21G0615 Fragaria x ananassa HOM05D000397 ORTHO05D000492 1.1e-24 117.5 160 44.4
MD10G1294500 Malus domestica HOM05D000397 ORTHO05D000492 1.1e-24 117.5 161 46.0
FvH4_3g09200 Fragaria vesca HOM05D000397 ORTHO05D000492 1.8e-24 116.7 148 46.6
FAN25G1253 Fragaria x ananassa HOM05D000397 ORTHO05D000492 1.8e-24 116.7 152 45.4
FAN11G1130 Fragaria x ananassa HOM05D000397 ORTHO05D000492 2.4e-24 116.3 152 45.4
FAN21G2158 Fragaria x ananassa HOM05D000397 ORTHO05D000492 2.4e-24 116.3 152 45.4
Lj1C1205G5 Lonicera japonica HOM05D000397 ORTHO05D000492 3.1e-24 115.9 128 44.5
Ciclev10014194m.g Citrus clementina HOM05D000397 ORTHO05D000492 4.0e-24 115.5 136 47.8
Duzib192G0710 Durio zibethinus HOM05D000397 ORTHO05D000492 2.6e-23 112.8 166 41.6
MD05G1312700 Malus domestica HOM05D000397 ORTHO05D000492 2.6e-23 112.8 161 44.1
Potri.004G043500 Populus trichocarpa HOM05D000397 ORTHO05D000492 2.6e-23 112.8 152 45.4
Sabra11G0036400 Salix brachista HOM05D000397 ORTHO05D000492 2.6e-23 112.8 152 44.1
CANSAT35G0885 Cannabis sativa HOM05D000397 ORTHO05D000492 3.4e-23 112.5 146 43.8
Psat3g052480 Pisum sativum HOM05D000397 ORTHO05D000492 7.6e-23 111.3 96 61.5
Potri.011G052600 Populus trichocarpa HOM05D000397 ORTHO05D000492 9.9e-23 110.9 153 44.4
Gohir.A10G025900 Gossypium hirsutum HOM05D000397 ORTHO05D000492 1.3e-22 110.5 164 42.7
Thecc.06G187700 Theobroma cacao HOM05D000397 ORTHO05D000492 6.4e-22 108.2 159 43.4
COL.COLO4_31472 Corchorus olitorius HOM05D000397 ORTHO05D000492 1.4e-21 107.1 147 44.2
Dinv07560 Davidia involucrata HOM05D000397 ORTHO05D000492 1.9e-21 106.7 158 41.1
TAR629G1147 Trochodendron aralioides HOM05D000397 ORTHO05D000492 2.4e-21 106.3 163 41.7
Nn1g06540 Nelumbo nucifera HOM05D000397 ORTHO05D000492 2.1e-20 103.2 138 43.5
Gohir.D06G131500 Gossypium hirsutum HOM05D000397 ORTHO05D000492 2.7e-20 102.8 159 41.5
Gorai.010G153400 Gossypium raimondii HOM05D000397 ORTHO05D000492 2.7e-20 102.8 159 41.5
CSS0036959 Camellia sinensis var. sinensis HOM05D000397 ORTHO05D000492 1.0e-19 100.9 159 39.0
Rhsim02G0130200 Rhododendron simsii HOM05D000397 ORTHO05D000492 1.0e-19 100.9 131 43.5
Duzib235G1457 Durio zibethinus HOM05D000397 ORTHO05D000492 1.7e-19 100.1 136 44.1
Actinidia01880 Actinidia chinensis HOM05D000397 ORTHO05D000492 1.1e-18 97.4 161 36.6
Sed0022645 Sechium edule HOM05D000397 ORTHO05D000492 1.1e-18 97.4 156 39.1
Nn1g04093 Nelumbo nucifera HOM05D000397 ORTHO05D000492 1.5e-18 97.1 138 41.3
vmacro03869 Vaccinium macrocarpon HOM05D000397 ORTHO05D000492 2.5e-18 96.3 132 43.2
Lj2C288G5 Lonicera japonica HOM05D000397 ORTHO05D000492 3.3e-18 95.9 131 42.0
Gohir.D10G026600 Gossypium hirsutum HOM05D000397 ORTHO05D000492 4.3e-18 95.5 118 46.6
Gorai.011G027900 Gossypium raimondii HOM05D000397 ORTHO05D000492 4.3e-18 95.5 118 46.6
Hma1.2p1_0785F.1_g217450 Hydrangea macrophylla HOM05D000397 ORTHO05D000492 9.6e-18 94.4 166 37.3
Aa31LG9G13670 Aethionema arabicum HOM05D000397 ORTHO05D000492 1.6e-17 93.6 122 41.0
Peaxi162Scf00661g00035 Petunia axillaris HOM05D000397 ORTHO05D000492 2.8e-17 92.8 153 38.6
Manes.16G027500 Manihot esculenta HOM05D000397 ORTHO05D000492 3.6e-17 92.4 138 44.2
Lsat_1_v5_gn_4_53041 Lactuca sativa HOM05D000397 ORTHO05D000492 8.1e-17 91.3 179 34.6
TAR624G1418 Trochodendron aralioides HOM05D000397 ORTHO05D000492 8.1e-17 91.3 160 33.1
MELO3C007283.2 Cucumis melo HOM05D000397 ORTHO05D000492 1.4e-16 90.5 147 39.5
Gohir.A06G126700 Gossypium hirsutum HOM05D000397 ORTHO05D000492 1.4e-16 90.5 121 45.5
TWI38G0199 Tripterygium wilfordii HOM05D000397 ORTHO05D000492 1.4e-16 90.5 169 37.3
ClCG01G022980 Citrullus lanatus HOM05D000397 ORTHO05D000492 1.8e-16 90.1 152 38.8
Manes.17G045600 Manihot esculenta HOM05D000397 ORTHO05D000492 1.8e-16 90.1 164 39.6
Sabra04G0026900 Salix brachista HOM05D000397 ORTHO05D000492 1.8e-16 90.1 214 32.2
EL10Ac8g20385 Beta vulgaris HOM05D000397 ORTHO05D000492 2.4e-16 89.7 153 37.3
arahy.Tifrunner.gnm1.ann1.RAY848 Arachis hypogaea HOM05D000399 ORTHO05D000304 3.1e-16 89.4 61 73.8
Glyma.18G170400 Glycine max HOM05D000397 ORTHO05D000492 5.3e-16 88.6 63 61.9
Sopen02g023070 Solanum pennellii HOM05D000397 ORTHO05D000492 5.3e-16 88.6 127 39.4
TWI38G1246 Tripterygium wilfordii HOM05D000397 ORTHO05D000492 5.3e-16 88.6 160 36.9
CsaV3_6G050140 Cucumis sativus L. HOM05D000397 ORTHO05D000492 6.9e-16 88.2 147 40.1
Ah.09g237400 Amaranthus hybridus HOM05D000397 ORTHO05D000492 9.0e-16 87.8 159 34.6
MBI06_g04177_MAGBIO Magnolia biondii HOM05D000397 ORTHO05D000492 9.0e-16 87.8 183 33.3
Hund23742 Selenicereus undatus HOM05D000397 ORTHO05D000492 9.0e-16 87.8 157 37.6
Sp4g16120 Schrenkiella parvula HOM05D000397 ORTHO05D000492 1.5e-15 87.0 155 34.2
Nitab4.5_0003432g0090 Nicotiana tabacum HOM05D000397 ORTHO05D000492 2.6e-15 86.3 112 42.9
Nitab4.5_0007074g0020 Nicotiana tabacum HOM05D000397 ORTHO05D000492 3.4e-15 85.9 127 39.4
PGR004G2123 Punica granatum HOM05D000397 ORTHO05D000492 3.4e-15 85.9 155 37.4
Solyc02g078210.3 Solanum lycopersicum HOM05D000397 ORTHO05D000492 3.4e-15 85.9 127 37.8
PGSC0003DMG400029724 Solanum tuberosum HOM05D000397 ORTHO05D000492 4.5e-15 85.5 119 38.7
Cc02_g13390 Coffea canephora HOM05D000397 ORTHO05D000492 5.8e-15 85.1 151 36.4
HanXRQChr10g0279271 Helianthus annuus HOM05D000397 ORTHO05D000492 5.8e-15 85.1 145 37.9
AUR62017018 Chenopodium quinoa HOM05D000397 ORTHO05D000492 1.3e-14 84.0 152 34.2
CAN.G1164.32 Capsicum annuum HOM05D000397 ORTHO05D000492 2.2e-14 83.2 136 41.9
DCAR_008041 Daucus carota HOM05D000397 ORTHO05D000492 2.9e-14 82.8 131 38.2
Oeu053974.1 Olea europaea HOM05D000397 ORTHO05D000492 2.9e-14 82.8 160 31.9
AUR62014823 Chenopodium quinoa HOM05D000397 ORTHO05D000492 6.4e-14 81.6 165 32.1
Sc17g0006190 Simmondsia chinensis HOM05D000397 ORTHO05D000492 8.4e-14 81.3 124 39.5
AT2G33770 Arabidopsis thaliana HOM05D000397 ORTHO05D000492 1.4e-13 80.5 122 35.2
AL4G29460 Arabidopsis lyrata HOM05D000397 ORTHO05D000492 4.2e-13 79.0 155 34.2
CARHR127840 Cardamine hirsuta HOM05D000397 ORTHO05D000492 5.4e-13 78.6 153 34.6
Thhalv10016214m.g Eutrema salsugineum HOM05D000397 ORTHO05D000492 5.4e-13 78.6 155 33.5
Hund21223 Selenicereus undatus HOM05D000397 ORTHO05D000492 1.6e-12 77.0 154 32.5
BolC4t27799H Brassica oleracea HOM05D000397 ORTHO05D000492 4.6e-12 75.5 134 35.1
C04p63250 Brassica napus HOM05D000397 ORTHO05D000492 6.0e-12 75.1 134 35.1
Aqoxy1G02420 Aquilegia oxysepala HOM05D000397 ORTHO05D000492 1.8e-11 73.6 139 35.3
TAR627G0010 Trochodendron aralioides HOM05D000397 ORTHO05D000492 2.3e-11 73.2 144 36.8
Carub.0004s1541 Capsella rubella HOM05D000397 ORTHO05D000492 3.0e-11 72.8 128 35.2
PSO675G8882 Papaver somniferum HOM05D000397 ORTHO05D000492 3.0e-11 72.8 134 32.1
ECA234G3659 Erigeron canadensis HOM05D000397 ORTHO05D000492 3.9e-11 72.4 152 34.2
A04p25960 Brassica napus HOM05D000397 ORTHO05D000492 5.1e-11 72.0 134 33.6
BraA04t18099Z Brassica rapa HOM05D000397 ORTHO05D000492 1.1e-10 70.9 135 34.8
SGA_v2.0_scaffold159G37641 Striga asiatica HOM05D000397 ORTHO05D000492 1.1e-10 70.9 150 33.3
PSO541G3306 Papaver somniferum HOM05D000397 ORTHO05D000492 2.5e-10 69.7 134 31.3
Oeu057914.1 Olea europaea HOM05D000397 ORTHO05D000492 3.3e-10 69.3 73 41.1
THA.LOC104820543 Tarenaya hassleriana HOM05D000397 ORTHO05D000492 3.3e-10 69.3 152 34.2
Migut.H01487 Erythranthe guttata HOM05D000397 ORTHO05D000492 1.3e-09 67.4 122 32.8
MSTRG.14699 Avicennia marina HOM05D000397 ORTHO05D000492 5.8e-07 58.5 154 30.5
SalBow7G2399 Salvia bowleyana HOM05D000397 ORTHO05D000492 2.9e-06 56.2 133 31.6
BcaC06g36194 Brassica carinata HOM05D000397 ORTHO05D002248 3.8e-06 55.8 152 26.3
C07p06680 Brassica napus HOM05D000397 ORTHO05D002248 3.8e-06 55.8 152 26.3
BolC7t41090H Brassica oleracea HOM05D000397 ORTHO05D002248 3.8e-06 55.8 152 26.3
CDE05G0613 Ceratophyllum demersum HOM05D000397 ORTHO05D000492 4.9e-06 55.5 119 28.6
A07p04200 Brassica napus HOM05D000397 ORTHO05D002248 6.4e-06 55.1 139 26.6
unitig_26.g9360 Utricularia gibba HOM05D000397 ORTHO05D000492 6.4e-06 55.1 153 28.1


User provided reference genes

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