Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 1.2e-233 812.8 404 100.0
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 1.2e-169 600.1 375 79.2
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 6.8e-168 594.3 375 78.1
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 2.6e-167 592.4 365 80.5
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 5.9e-164 581.3 372 77.7
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 1.8e-160 569.7 370 75.9
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 4.4e-159 565.1 362 76.8
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 4.6e-156 555.1 381 73.0
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 8.9e-152 540.8 335 80.3
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 1.9e-149 533.1 362 70.2
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 5.0e-147 525.0 378 67.5
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 2.3e-144 516.2 371 70.1
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 6.8e-144 514.6 359 69.9
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 6.4e-142 508.1 354 70.3
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 1.1e-141 507.3 362 69.6
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 1.4e-141 506.9 355 69.9
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 2.4e-141 506.1 350 70.3
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 7.1e-141 504.6 354 69.8
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 7.1e-141 504.6 354 69.8
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 1.2e-140 503.8 371 67.1
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 2.1e-140 503.1 348 70.1
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 2.7e-140 502.7 356 70.2
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 3.5e-140 502.3 363 67.2
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 4.6e-140 501.9 354 69.8
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 6.0e-140 501.5 348 71.3
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 6.0e-140 501.5 348 71.3
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 1.3e-139 500.4 368 66.6
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 2.3e-139 499.6 367 67.0
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 5.1e-139 498.4 384 64.8
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 6.6e-139 498.0 372 65.1
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 1.5e-138 496.9 351 69.8
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 3.3e-138 495.7 354 68.9
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 4.3e-138 495.4 349 69.1
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 4.3e-138 495.4 357 66.4
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 5.6e-138 495.0 377 66.3
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 9.5e-138 494.2 355 68.7
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 9.5e-138 494.2 348 68.4
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 1.2e-137 493.8 371 66.3
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.6e-137 493.4 365 66.3
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 2.8e-137 492.7 366 65.3
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 2.8e-137 492.7 373 63.8
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 3.6e-137 492.3 350 67.7
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.7e-137 491.9 349 68.8
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 4.7e-137 491.9 363 68.0
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 6.2e-137 491.5 356 68.3
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 6.2e-137 491.5 350 67.7
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 8.1e-137 491.1 353 68.3
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 2.4e-136 489.6 348 67.5
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 2.4e-136 489.6 348 67.2
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 2.4e-136 489.6 377 65.5
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 5.2e-136 488.4 346 69.1
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 8.9e-136 487.6 360 67.8
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 8.9e-136 487.6 400 62.5
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 8.9e-136 487.6 350 69.1
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 2.6e-135 486.1 305 75.4
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 3.4e-135 485.7 374 63.9
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 7.6e-135 484.6 372 65.1
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 7.6e-135 484.6 348 67.0
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.3e-134 483.8 386 62.7
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 1.7e-134 483.4 355 67.3
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 1.1e-133 480.7 346 66.5
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 2.4e-133 479.6 346 66.2
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 2.4e-133 479.6 348 68.7
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 3.2e-133 479.2 346 67.1
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 3.2e-133 479.2 346 67.6
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 5.4e-133 478.4 347 66.6
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 9.2e-133 477.6 351 66.7
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 2.7e-132 476.1 346 66.2
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 2.7e-132 476.1 348 65.8
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.7e-132 476.1 347 66.9
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 3.5e-132 475.7 368 64.4
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 4.6e-132 475.3 384 61.5
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 6.0e-132 474.9 358 65.1
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 7.8e-132 474.6 346 65.9
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 7.8e-132 474.6 350 65.4
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 1.0e-131 474.2 365 65.8
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.3e-131 473.0 357 65.3
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 3.9e-131 472.2 355 64.2
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 5.1e-131 471.9 411 59.9
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 8.6e-131 471.1 360 65.3
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 1.5e-130 470.3 359 65.7
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 4.3e-130 468.8 370 62.7
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 5.6e-130 468.4 354 64.1
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 5.6e-130 468.4 373 63.5
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 9.6e-130 467.6 359 65.2
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 9.6e-130 467.6 360 64.7
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 3.6e-129 465.7 378 62.7
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 3.6e-129 465.7 346 65.9
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 3.6e-129 465.7 333 65.2
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 6.2e-129 464.9 346 64.5
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 8.1e-129 464.5 350 68.0
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 1.2e-127 460.7 355 64.8
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 7.6e-127 458.0 336 65.5
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.3e-126 457.2 303 71.3
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 4.9e-126 455.3 308 70.1
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.9e-126 455.3 348 66.4
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 6.4e-126 454.9 331 66.2
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 1.1e-125 454.1 350 66.3
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.4e-125 453.8 361 64.8
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 3.2e-125 452.6 314 70.1
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 1.2e-124 450.7 385 59.7
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 7.8e-124 448.0 411 55.5
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 3.9e-123 445.7 301 68.1
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 6.6e-123 444.9 337 65.0
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 8.7e-123 444.5 276 76.1
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 1.5e-122 443.7 349 63.6
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.6e-121 439.1 396 58.1
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 3.6e-121 439.1 346 64.2
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 2.4e-120 436.4 336 64.3
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.2e-119 434.1 303 67.7
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 2.7e-116 422.9 390 56.4
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.1e-112 411.0 262 72.5
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 2.6e-111 406.4 366 58.2
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.6e-111 406.4 420 53.1
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 6.4e-110 401.7 314 64.6
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 2.4e-109 399.8 332 60.2
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.5e-109 398.7 339 61.1
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 3.5e-108 396.0 249 72.7
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 7.9e-108 394.8 478 45.8
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 1.1e-106 391.0 332 58.1
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 1.7e-102 377.1 248 69.4
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 2.9e-94 349.7 196 81.6
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.5e-93 346.7 256 68.4
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.2e-93 346.3 378 49.5
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 3.6e-92 342.8 277 60.6
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 1.0e-91 341.3 356 50.0
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 5.3e-88 328.9 218 69.3
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.5e-87 327.4 222 71.2
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 1.5e-87 327.4 257 64.6
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 5.9e-87 325.5 258 65.1
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 1.0e-86 324.7 239 66.9
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 6.5e-86 322.0 382 49.5
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 1.1e-85 321.2 322 53.7
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 5.5e-85 318.9 293 59.0
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 1.6e-84 317.4 359 46.0
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 3.3e-82 309.7 246 63.0
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 1.4e-80 304.3 349 47.3
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 3.2e-77 293.1 279 50.2
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 3.0e-75 286.6 223 66.8
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 1.2e-71 274.6 278 50.7
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.0e-71 273.9 304 49.0
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.7e-70 270.8 220 65.0
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 8.5e-70 268.5 194 69.6
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 3.1e-64 250.0 338 45.9
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.7e-63 246.9 194 65.5
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 8.5e-62 241.9 134 84.3
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.5e-61 241.1 192 66.1
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.9e-61 240.7 200 64.0
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 4.7e-52 209.5 333 42.6
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.1e-48 198.4 125 72.0
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 1.3e-41 174.9 161 59.0
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 2.7e-39 167.2 222 39.2
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 1.3e-38 164.9 234 44.4
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 5.0e-38 162.9 155 51.6
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 3.6e-36 156.8 209 38.3
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.4e-35 154.8 336 35.1
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 2.6e-34 150.6 302 29.8
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 1.7e-33 147.9 89 75.3
Glyma.04G081501 Glycine max HOM05D004081 ORTHO05D025646 7.0e-32 142.5 96 81.2
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 3.5e-31 140.2 119 65.5
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 3.7e-25 120.2 207 33.3
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.2e-15 88.6 67 58.2
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 3.6e-12 77.0 49 71.4
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 8.1e-12 75.9 67 50.7
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 6.9e-11 72.8 73 57.5
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.9e-09 67.4 72 54.2
Glyma.04G081300 Glycine max HOM05D004081 ORTHO05D025646 3.8e-09 67.0 53 71.7
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 6.4e-09 66.2 74 50.0
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 1.4e-08 65.1 74 50.0


User provided reference genes

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