Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G081700 Glycine max HOM05D002545 ORTHO05D035963 1.8e-92 342.4 157 100.0
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 2.7e-32 142.5 120 53.3
LjContig00357g0019957 Lotus japonicus HOM05D000012 ORTHO05D008823 6.3e-21 104.8 141 34.0
LjContig00081g0021034 Lotus japonicus HOM05D002545 ORTHO05D002335 1.0e-18 97.4 138 37.7
Glyma.20G071100 Glycine max HOM05D000003 ORTHO05D000004 8.6e-18 94.4 82 54.9
TPR.G32089 Trifolium pratense HOM05D000003 ORTHO05D000004 1.6e-16 90.1 145 34.5
Atru.chr1.2408 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-15 85.9 149 34.9
Medtr1g026690 Medicago truncatula HOM05D000003 ORTHO05D000004 3.4e-14 82.4 147 36.7
Phvul.004G134700 Phaseolus vulgaris HOM05D002545 ORTHO05D002335 2.8e-13 79.3 114 35.1
TWI36G1756 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.7e-13 79.0 150 28.7
Atru.chr11.644 Acer truncatum HOM05D000003 ORTHO05D000004 6.3e-13 78.2 138 34.1
MD02G1293300 Malus domestica HOM05D000003 ORTHO05D000004 1.8e-12 76.6 138 31.2
Aqoxy2G02181 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.4e-12 76.3 150 30.7
arahy.Tifrunner.gnm1.ann1.8AAX84 Arachis hypogaea HOM05D000003 ORTHO05D000004 5.4e-12 75.1 137 30.7
LjContig00357g0018592 Lotus japonicus HOM05D002777 ORTHO05D001516 5.4e-12 75.1 127 32.3
Medtr4g064813 Medicago truncatula HOM05D002507 ORTHO05D015714 5.4e-12 75.1 113 35.4
Cpa.g.sc3.188 Carica papaya HOM05D003018 ORTHO05D003402 7.0e-12 74.7 138 34.1
Medtr8g037280 Medicago truncatula HOM05D000003 ORTHO05D000004 7.0e-12 74.7 146 34.2
PSO596G0036 Papaver somniferum HOM05D000003 ORTHO05D000004 9.2e-12 74.3 143 32.2
COL.COLO4_35424 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.2e-11 73.9 156 28.2
PSO339G6332 Papaver somniferum HOM05D000003 ORTHO05D000004 1.6e-11 73.6 137 33.6
Cpa.g.sc83.78 Carica papaya HOM05D000003 ORTHO05D000004 2.0e-11 73.2 142 27.5
Atru.chr10.61 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-11 72.4 131 34.4
Aqoxy5G04099 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.5e-11 72.0 147 29.9
MBI02_g23961_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 4.5e-11 72.0 144 34.0
TPR.G25618 Trifolium pratense HOM05D000003 ORTHO05D000004 4.5e-11 72.0 137 32.8
Actinidia03486 Actinidia chinensis HOM05D000028 ORTHO05D000296 5.9e-11 71.6 118 37.3
Potri.018G042350 Populus trichocarpa HOM05D000003 ORTHO05D000004 7.8e-11 71.2 122 32.8
Lalb_Chr18g0059261 Lupinus albus HOM05D011108 ORTHO05D002335 1.3e-10 70.5 108 30.6
Medtr2g090750 Medicago truncatula HOM05D000003 ORTHO05D000004 1.7e-10 70.1 103 35.9
PGSC0003DMG400024990 Solanum tuberosum HOM05D000003 ORTHO05D000004 1.7e-10 70.1 141 31.9
Cpa.g.sc202.9 Carica papaya HOM05D000003 ORTHO05D000004 2.3e-10 69.7 149 28.2
MD06G1023000 Malus domestica HOM05D000003 ORTHO05D000004 2.3e-10 69.7 139 30.9
GSVIVG01004252001 Vitis vinifera HOM05D000003 ORTHO05D000004 2.3e-10 69.7 148 28.4
Thecc.04G261100 Theobroma cacao HOM05D000003 ORTHO05D000004 2.9e-10 69.3 136 28.7
ECA236G1770 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.1e-09 67.4 141 31.2
Cpa.g.sc195.3 Carica papaya HOM05D000003 ORTHO05D000004 1.5e-09 67.0 138 28.3
MBI14_g15700_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 1.9e-09 66.6 135 28.1
Medtr5g095580 Medicago truncatula HOM05D002545 ORTHO05D002335 1.9e-09 66.6 144 29.9
PGSC0003DMG400016171 Solanum tuberosum HOM05D000003 ORTHO05D000004 1.9e-09 66.6 139 30.9
COL.COLO4_36939 Corchorus olitorius HOM05D000003 ORTHO05D000004 2.5e-09 66.2 100 33.0
Thecc.09G223500 Theobroma cacao HOM05D009258 ORTHO05D000006 2.5e-09 66.2 106 32.1
Atru.chr3.3329 Acer truncatum HOM05D000003 ORTHO05D002259 3.3e-09 65.9 136 28.7
Aqoxy1G02399 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.3e-09 65.9 149 28.2
PSO675G9069 Papaver somniferum HOM05D000003 ORTHO05D000004 3.3e-09 65.9 140 29.3
Ah.06g185410 Amaranthus hybridus HOM05D000003 ORTHO05D000004 4.3e-09 65.5 169 26.0
arahy.Tifrunner.gnm1.ann1.TTJ1ZL Arachis hypogaea HOM05D000003 ORTHO05D000004 4.3e-09 65.5 118 33.9
Atru.chr8.612 Acer truncatum HOM05D000003 ORTHO05D000004 5.6e-09 65.1 147 27.2
Cpa.g.sc23.130 Carica papaya HOM05D000003 ORTHO05D000004 5.6e-09 65.1 135 31.9
Thecc.08G169100 Theobroma cacao HOM05D000003 ORTHO05D023207 7.3e-09 64.7 116 28.4
MBI01_g39982_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 1.2e-08 63.9 131 32.1
Atru.chr5.2215 Acer truncatum HOM05D000003 ORTHO05D002259 1.6e-08 63.5 109 34.9
Glyma.01G138400 Glycine max HOM05D002545 ORTHO05D002335 1.6e-08 63.5 104 32.7
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 1.6e-08 63.5 144 24.3
PGSC0003DMG400006509 Solanum tuberosum HOM05D000003 ORTHO05D000004 1.6e-08 63.5 137 31.4
Aqoxy2G01460 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.1e-08 63.2 145 30.3
Thecc.04G086900 Theobroma cacao HOM05D000508 ORTHO05D000371 2.8e-08 62.8 116 28.4
Phvul.003G076100 Phaseolus vulgaris HOM05D000003 ORTHO05D002335 3.6e-08 62.4 77 39.0
QL02p033301 Quercus lobata HOM05D000003 ORTHO05D000004 3.6e-08 62.4 156 28.8
Aqoxy1G03271 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.7e-08 62.0 139 28.1
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 6.1e-08 61.6 156 28.8
Atru.chr12.2307 Acer truncatum HOM05D000003 ORTHO05D002259 8.0e-08 61.2 138 29.7
ECA238G0842 Erigeron canadensis HOM05D000179 ORTHO05D000004 8.0e-08 61.2 142 32.4
TAR476G0004 Trochodendron aralioides HOM05D000003 ORTHO05D000004 8.0e-08 61.2 152 30.3
CSS0007080 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.0e-07 60.8 156 29.5
Medtr3g093740 Medicago truncatula HOM05D002545 ORTHO05D002335 1.0e-07 60.8 119 33.6
Aqoxy4G00307 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.4e-07 60.5 143 26.6
Medtr4g094385 Medicago truncatula HOM05D002545 ORTHO05D002335 1.4e-07 60.5 119 28.6
Aqoxy3G01412 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.8e-07 60.1 143 25.9
MBI05_g11580_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 1.8e-07 60.1 137 27.7
MBI07_g21394_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 1.8e-07 60.1 137 28.5
Cpa.g.sc76.45 Carica papaya HOM05D000003 ORTHO05D000004 2.3e-07 59.7 145 25.5
Lj3g0020596 Lotus japonicus HOM05D002545 ORTHO05D010885 2.3e-07 59.7 71 38.0
MBI05_g25766_MAGBIO Magnolia biondii HOM05D000742 ORTHO05D000924 2.3e-07 59.7 146 30.1
RcHm_v2.0_Chr6g0291741 Rosa chinensis HOM05D000003 ORTHO05D000004 2.3e-07 59.7 136 30.9
MBI16_g00833_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 3.0e-07 59.3 145 28.3
PSO478G0875 Papaver somniferum HOM05D000003 ORTHO05D000004 3.0e-07 59.3 144 28.5
QL02p102686 Quercus lobata HOM05D000003 ORTHO05D000004 3.0e-07 59.3 94 29.8
Atru.chr11.133 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-07 58.9 124 29.0
Aqoxy1G02814 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.0e-07 58.9 91 33.0
HanXRQChr07g0206811 Helianthus annuus HOM05D000003 ORTHO05D000004 4.0e-07 58.9 149 30.2
CSS0031349 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.2e-07 58.5 108 35.2
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 6.8e-07 58.2 156 24.4
HanXRQChr02g0051751 Helianthus annuus HOM05D000003 ORTHO05D000001 6.8e-07 58.2 121 31.4
Aqoxy3G00653 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 8.9e-07 57.8 148 29.1
CSS0000102 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D033878 1.2e-06 57.4 92 32.6
CANSAT35G1373 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-06 57.4 112 31.2
Medtr0043s0050 Medicago truncatula HOM05D002545 ORTHO05D002335 1.2e-06 57.4 119 26.1
CSS0025653 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.5e-06 57.0 155 28.4
MBI01_g26131_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 2.0e-06 56.6 136 29.4
Aqoxy1G02819 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.6e-06 56.2 80 36.2
Medtr5g464500 Medicago truncatula HOM05D002545 ORTHO05D002335 2.6e-06 56.2 124 29.0
Glyma.16G071402 Glycine max HOM05D066373 ORTHO05D035963 3.4e-06 55.8 85 30.6
Medtr6g034785 Medicago truncatula HOM05D002545 ORTHO05D002335 3.4e-06 55.8 148 27.7
CSS0030341 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.4e-06 55.5 131 29.8
Cpa.g.sc104.66 Carica papaya HOM05D000003 ORTHO05D000004 4.4e-06 55.5 115 31.3
Cpa.g.sc363.2 Carica papaya HOM05D000003 ORTHO05D000004 4.4e-06 55.5 138 26.1
HanXRQChr15g0497301 Helianthus annuus HOM05D000003 ORTHO05D000004 4.4e-06 55.5 154 26.0
MBI19_g24071_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 4.4e-06 55.5 111 30.6
Medtr3g108670 Medicago truncatula HOM05D000003 ORTHO05D002335 9.8e-06 54.3 146 26.7
PSO384G0532 Papaver somniferum HOM05D000003 ORTHO05D001026 9.8e-06 54.3 136 25.7
Rhsim11G0018500 Rhododendron simsii HOM05D000003 ORTHO05D000004 9.8e-06 54.3 110 30.0


User provided reference genes

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